KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:56 2014 Check: 00 .. Name: BACU009479/1-410 Len: 570 Check: 285 Weight: 1.00 Name: ENSTTRP00000009106/1-480 Len: 570 Check: 6850 Weight: 1.00 Name: ENSP00000379678/1-567 Len: 570 Check: 3896 Weight: 1.00 Name: bmy_03773T0/1-348 Len: 570 Check: 3485 Weight: 1.00 Name: ENSBTAP00000044376/1-567 Len: 570 Check: 5593 Weight: 1.00 // 1 50 BACU009479/1-410 ----MDPIVL ILVSGWVDHL I--------- ------KWQQ IEPFLLSLSR ENSTTRP00000009106/1-480 ---------- ---------- ---------- ---------- ---------- ENSP00000379678/1-567 MEGSPIPVLT VPTAPYEDQR PAGGGGLRRP TGLFEGQRNY LPNFIQSVLS bmy_03773T0/1-348 MEGSPIPVLT VPTAPYEDQR PAGGGGLRRP TGLFEGQRNY LPNFIQSVLS ENSBTAP00000044376/1-567 MEGSPIPVLT VPTAPYEDQR PAGGGGLRRP TGLFEGQRNY LPNFIQSVLS 51 100 BACU009479/1-410 VLYLK----- ---------- ---------- -------IGR LIIGQNGILS ENSTTRP00000009106/1-480 ---------- ---------- ---------- -------IGR LIIGQNGILS ENSP00000379678/1-567 SIDLRDRQGC TMVVGSDGRY FSRTAIEIVV QMAAANGIGR LIIGQNGILS bmy_03773T0/1-348 SIDLRDRQGC TMVVGSDGRY FSRTATEIVV QMAAANGIGR LIIGQNGILS ENSBTAP00000044376/1-567 SIDLRDRQGC TMVVGSDGRY FSRTATEIVV QMAAANGIGR LIIGQNGILS 101 150 BACU009479/1-410 TPAVSCIIRK IKAAGGIILT ASHCPGGPGG EFGVKFNVAN GGPAPDVVSD ENSTTRP00000009106/1-480 TPAVSCIIRK IKAAGGIILT ASHCPGGPGG EFGVKFNVAN GGPAPDVVSD ENSP00000379678/1-567 TPAVSCIIRK IKAAGGIILT ASHCPGGPGG EFGVKFNVAN GGPAPDVVSD bmy_03773T0/1-348 TPAVSCIIRK IKAAGGIILT ASHCPGGPGG EFGVKFNVAN GGPAPDVVSD ENSBTAP00000044376/1-567 TPAVSCIIRK IKAAGGIILT ASHCPGGPGG EFGVKFNVAN GGPAPDVVSD 151 200 BACU009479/1-410 KIYQISKTIE EYAICPDLRI DLSRLGRQEF DLENKFKPFR VEIVDPVDIY ENSTTRP00000009106/1-480 KIYQISKTIE EYAICPDLRI DLSRLGRQEF DLENKFKPFR VEIVDPVDIY ENSP00000379678/1-567 KIYQISKTIE EYAICPDLRI DLSRLGRQEF DLENKFKPFR VEIVDPVDIY bmy_03773T0/1-348 KIYQISKTIE EYAICPDLRI DLSRLGRQEF DLENKFKPFR VEIVDPVDIY ENSBTAP00000044376/1-567 KIYQISKTIE EYTICPDLRI DLSRLGRQEF DLENKFKPFR VEIVDPVDIY 201 250 BACU009479/1-410 LNLLRTIFDF NAIKSLLTGP SQLKIRIDAM HGVMGPYVRK VLCDELGAPA ENSTTRP00000009106/1-480 LNLLRTIFDF NAIKSLLTGP SQLKIRIDAM HGVMGPYVRK VLCDELGAPA ENSP00000379678/1-567 LNLLRTIFDF HAIKGLLTGP SQLKIRIDAM HGVMGPYVRK VLCDELGAPA bmy_03773T0/1-348 LNLLRTIFDF NAIKSLLTGP SQLKIRIDAM HGVMGPYVRK VLCDELGAPA ENSBTAP00000044376/1-567 LNLLRTIFDF NAIKSLLTGP GQLKIRVDAM HGVMGPYVRK VLCDELGAPA 251 300 BACU009479/1-410 NSAINCVPLE DFGGQHPDPN LTYATTLLEA MKGGEYGFGA AFDADGDRYM ENSTTRP00000009106/1-480 NSAINCVPLE DFGGQHPDPN LTYATTLLEA MKGGEYGFGA AFDADGDRYM ENSP00000379678/1-567 NSAINCVPLE DFGGQHPDPN LTYATTLLEA MKGGEYGFGA AFDADGDRYM bmy_03773T0/1-348 NSAINCVPLE DFGGQHPDPN LTYATTLLEA MKGGEYGFGA AFDADGDRYM ENSBTAP00000044376/1-567 NSAINCVPLE DFGGQHPDPN LTYATTLLEA MKGGEYGFGA AFDADGDRYM 301 350 BACU009479/1-410 ILGQNGFFVS PSDSLAIIAA NLSCIPYFRQ MGVRGFGRSM PTSTALDR-- ENSTTRP00000009106/1-480 ILGQNGFFVS PSDSLAIIAA NXXXXXXXXX XXXXXXXXXX XXXXXXXXVA ENSP00000379678/1-567 ILGQNGFFVS PSDSLAIIAA NLSCIPYFRQ MGVRGFGRSM PTSMALDRVA bmy_03773T0/1-348 ILGQNGFFVS PSDSLAIIAA NLSCIPYFRQ MGVRGFGRSM PTSTALDR-- ENSBTAP00000044376/1-567 ILGQNGFFVS PSDSLAIIAA NLSCIPYFRQ MGVRGFGRSM PTSTALDRVA 351 400 BACU009479/1-410 SSYLCLAYEK QAG------V LIPVSPEPGS HLVFRLQANN L---SGVW-- ENSTTRP00000009106/1-480 KSMKVPVYET PAGWRFFSNL MDSGRCSLCG EESFGTGSDH LREKDGLWAV ENSP00000379678/1-567 KSMKVPVYET PAGWRFFSNL MDSGRCNLCG EESFGTGSDH LREKDGLWAV bmy_03773T0/1-348 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044376/1-567 KSMKVPVYET PAGWRFFSNL MDSGRCSLCG EESFGTGSDH LREKDGLWAV 401 450 BACU009479/1-410 ---------- -KYRSGVCDS AWNQ------ ---DFQ---- ---------- ENSTTRP00000009106/1-480 LVWLSIIAAR KQSVEEIVRD HWAKFGRHYY CRFDYEALEP KTTYYIMRDL ENSP00000379678/1-567 LVWLSIIAAR KQSVEEIVRD HWAKFGRHYY CRFDYEGLDP KTTYYIMRDL bmy_03773T0/1-348 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044376/1-567 LVWLSIIAAR KQSVEEIVRD HWAKFGRHYY CRFDYEGLEP KTTYYIMRDL 451 500 BACU009479/1-410 ECLLEETLLC ASHF------ ---------- ---------- ---------- ENSTTRP00000009106/1-480 EALVTDKSFI GQQFAVGSHV YSVAKTDSFE YVDPVYGTVT KKQGLRIIFS ENSP00000379678/1-567 EALVTDKSFI GQQFAVGSHV YSVAKTDSFE YVDPVDGTVT KKQGLRIIFS bmy_03773T0/1-348 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044376/1-567 EALLTDKSFI GQQFAVGSHV YSVAKTDSFE YVDPVDGTVT KKQGLRIIFS 501 550 BACU009479/1-410 ----LMLALN VNS------- ---------- ---KQLPETQ F--LLEVAVS ENSTTRP00000009106/1-480 DASRLIFRLS SSSGVRATIR LYAESYERDP SGHDQEPQAV LSPLIAIALK ENSP00000379678/1-567 DASRLIFRLS SSSGVRATLR LYAESYERDP SGHDQEPQAV LSPLIAIALK bmy_03773T0/1-348 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044376/1-567 DASRLIFRLS SSSGVRATIR LYAESYERDP SGHDQEPQAV LSPLIAIALK 551 600 BACU009479/1-410 VFHILQPYMH RNPMQLVEFL ENSTTRP00000009106/1-480 ISQIHERTGR RGPTVIT--- ENSP00000379678/1-567 ISQIHERTGR RGPTVIT--- bmy_03773T0/1-348 ---------- ---------- ENSBTAP00000044376/1-567 ISQIHERTGR RGPTVIT---