KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:55:58 2014 Check: 00 ..
Name: ENSP00000199448/1-224 Len: 349 Check: 6479 Weight: 1.00
Name: ENSBTAP00000044382/1-236 Len: 349 Check: 7709 Weight: 1.00
Name: ENSTTRP00000003859/1-325 Len: 349 Check: 1812 Weight: 1.00
Name: bmy_07179T0/1-244 Len: 349 Check: 9009 Weight: 1.00
Name: BACU012625/1-121 Len: 349 Check: 9548 Weight: 1.00
//
1 50
ENSP00000199448/1-224 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000044382/1-236 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003859/1-325 MPFRMLVAPL PLHFLLAAES SENRSAAGSG PGTNSSRTIH RSFPRAQGPE
bmy_07179T0/1-244 ---------- ---------- ---------- ---------- ----------
BACU012625/1-121 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000199448/1-224 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000044382/1-236 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000003859/1-325 PRSPEPRPPP GPAATWPRPH GHSARELRCA SLGLLSAPSG SGWASGRARR
bmy_07179T0/1-244 ---------- ---------- ---------- ---------- ----------
BACU012625/1-121 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000199448/1-224 --MPGRAPLR TVPGALGAWL LGGLWAWTLC GLCSLGAV-- ----------
ENSBTAP00000044382/1-236 --MPRRAPLR VARGSLDAWL LGGLWVCALG CLCGVGMAAP GAGAGAGGSL
ENSTTRP00000003859/1-325 TAMPGRALLR VARRALGAWL LGGLWVWALG GLCGLGAA-- ----------
bmy_07179T0/1-244 --MPGRALLR VARGALGAWL LGGLWVWALG GLCGLGAAAP --RPGAGGSP
BACU012625/1-121 ---------- ---------- ---------- ---------- ----------
151 200
ENSP00000199448/1-224 GAPRPCQAPQ QWEGRQVMYQ QSSGRNSRAL LSYDGLNQRV RVLDERKALI
ENSBTAP00000044382/1-236 GAQRPCQAPQ QWEGRQVLYR QSTGRYSRAL LSYDGLNQRV RVLDERKALI
ENSTTRP00000003859/1-325 GSQRPCQAPQ QWEGRQVLYR QSTGRYSRAL LSYDGLNQRV RVLDERKALI
bmy_07179T0/1-244 GAQRPCQAPQ QWEGRQVLYR QSTGRYSRAL LSYDGLNQRV RVLDERKALI
BACU012625/1-121 ---------- ---------- ---------- ---------- ----------
201 250
ENSP00000199448/1-224 PCK------- ----RLFEYI LLYKDGVMFQ IDQATKQCSK MTLTQPWDPL
ENSBTAP00000044382/1-236 PCK------- ----RLFEYI LLYKDGVMFQ IEQATKQCSK ITLTEPWDPL
ENSTTRP00000003859/1-325 PCK------- ----RLFEYI LLYKDGVMFQ IEQATKQCSK ITLTHPWDPL
bmy_07179T0/1-244 PCKSPELFSF NLSSRLFEYI LLYKDGVMFQ IEQATKQCSK ITLTYPWDPL
BACU012625/1-121 ---------- ---------- -------MFQ IEQATKQCSK ITLTYPWDPL
251 300
ENSP00000199448/1-224 DIPQNSTFED QYSIGGPQEQ ITVQEWSDRK SARSYETWIG IYTVKDCYPV
ENSBTAP00000044382/1-236 DIPQNSTFED QYSIGGPQEQ ITVQEWSDRK SARSYETWIG IYTVKDCYPV
ENSTTRP00000003859/1-325 DIPQNSTFED QYSIGGPQEQ ITVQEWSDRK SARSYETWIG IYTLKDCYPV
bmy_07179T0/1-244 DIPQNSTFED QYSIGGPQEQ ITVQEWSDRK SARSYETWIG IYTVKDCYPV
BACU012625/1-121 DIPQNSTFED QYSIGGPQEQ ITVQEWSDRK SARSYETWIG IYTVKDCYPV
301 350
ENSP00000199448/1-224 QETFTINYSV ILSTRFFDIQ LGIKDPSVFT PPSTCQMAQL EKMSEDCSW
ENSBTAP00000044382/1-236 QETVTKNYSV ILSTRFFDIQ LGIKDPSVFI PPSTCQTAQP ERMSEECSW
ENSTTRP00000003859/1-325 QETFTKNYSV LLSTRFFDIQ LGIKDPSVFT PPSTCQTAQP ERMSEDCS-
bmy_07179T0/1-244 QETFTKNYSV ILSTRFFDIQ LGIKDPSVFT PPSTCQTAQP ERMSEDCS-
BACU012625/1-121 QETFTKNYSV ILSTRFFDIQ LGIKDPSVFT PPSTCQTAQP ERMSEDCS-