KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:58 2014 Check: 00 .. Name: ENSP00000199448/1-224 Len: 349 Check: 6479 Weight: 1.00 Name: ENSBTAP00000044382/1-236 Len: 349 Check: 7709 Weight: 1.00 Name: ENSTTRP00000003859/1-325 Len: 349 Check: 1812 Weight: 1.00 Name: bmy_07179T0/1-244 Len: 349 Check: 9009 Weight: 1.00 Name: BACU012625/1-121 Len: 349 Check: 9548 Weight: 1.00 // 1 50 ENSP00000199448/1-224 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044382/1-236 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003859/1-325 MPFRMLVAPL PLHFLLAAES SENRSAAGSG PGTNSSRTIH RSFPRAQGPE bmy_07179T0/1-244 ---------- ---------- ---------- ---------- ---------- BACU012625/1-121 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000199448/1-224 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044382/1-236 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003859/1-325 PRSPEPRPPP GPAATWPRPH GHSARELRCA SLGLLSAPSG SGWASGRARR bmy_07179T0/1-244 ---------- ---------- ---------- ---------- ---------- BACU012625/1-121 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000199448/1-224 --MPGRAPLR TVPGALGAWL LGGLWAWTLC GLCSLGAV-- ---------- ENSBTAP00000044382/1-236 --MPRRAPLR VARGSLDAWL LGGLWVCALG CLCGVGMAAP GAGAGAGGSL ENSTTRP00000003859/1-325 TAMPGRALLR VARRALGAWL LGGLWVWALG GLCGLGAA-- ---------- bmy_07179T0/1-244 --MPGRALLR VARGALGAWL LGGLWVWALG GLCGLGAAAP --RPGAGGSP BACU012625/1-121 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000199448/1-224 GAPRPCQAPQ QWEGRQVMYQ QSSGRNSRAL LSYDGLNQRV RVLDERKALI ENSBTAP00000044382/1-236 GAQRPCQAPQ QWEGRQVLYR QSTGRYSRAL LSYDGLNQRV RVLDERKALI ENSTTRP00000003859/1-325 GSQRPCQAPQ QWEGRQVLYR QSTGRYSRAL LSYDGLNQRV RVLDERKALI bmy_07179T0/1-244 GAQRPCQAPQ QWEGRQVLYR QSTGRYSRAL LSYDGLNQRV RVLDERKALI BACU012625/1-121 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000199448/1-224 PCK------- ----RLFEYI LLYKDGVMFQ IDQATKQCSK MTLTQPWDPL ENSBTAP00000044382/1-236 PCK------- ----RLFEYI LLYKDGVMFQ IEQATKQCSK ITLTEPWDPL ENSTTRP00000003859/1-325 PCK------- ----RLFEYI LLYKDGVMFQ IEQATKQCSK ITLTHPWDPL bmy_07179T0/1-244 PCKSPELFSF NLSSRLFEYI LLYKDGVMFQ IEQATKQCSK ITLTYPWDPL BACU012625/1-121 ---------- ---------- -------MFQ IEQATKQCSK ITLTYPWDPL 251 300 ENSP00000199448/1-224 DIPQNSTFED QYSIGGPQEQ ITVQEWSDRK SARSYETWIG IYTVKDCYPV ENSBTAP00000044382/1-236 DIPQNSTFED QYSIGGPQEQ ITVQEWSDRK SARSYETWIG IYTVKDCYPV ENSTTRP00000003859/1-325 DIPQNSTFED QYSIGGPQEQ ITVQEWSDRK SARSYETWIG IYTLKDCYPV bmy_07179T0/1-244 DIPQNSTFED QYSIGGPQEQ ITVQEWSDRK SARSYETWIG IYTVKDCYPV BACU012625/1-121 DIPQNSTFED QYSIGGPQEQ ITVQEWSDRK SARSYETWIG IYTVKDCYPV 301 350 ENSP00000199448/1-224 QETFTINYSV ILSTRFFDIQ LGIKDPSVFT PPSTCQMAQL EKMSEDCSW ENSBTAP00000044382/1-236 QETVTKNYSV ILSTRFFDIQ LGIKDPSVFI PPSTCQTAQP ERMSEECSW ENSTTRP00000003859/1-325 QETFTKNYSV LLSTRFFDIQ LGIKDPSVFT PPSTCQTAQP ERMSEDCS- bmy_07179T0/1-244 QETFTKNYSV ILSTRFFDIQ LGIKDPSVFT PPSTCQTAQP ERMSEDCS- BACU012625/1-121 QETFTKNYSV ILSTRFFDIQ LGIKDPSVFT PPSTCQTAQP ERMSEDCS-