KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:58 2014 Check: 00 .. Name: ENSTTRP00000004250/1-526 Len: 526 Check: 3528 Weight: 1.00 Name: bmy_09508T0/1-377 Len: 526 Check: 8233 Weight: 1.00 Name: BACU002259/1-338 Len: 526 Check: 1518 Weight: 1.00 Name: ENSP00000264866/1-526 Len: 526 Check: 4426 Weight: 1.00 Name: ENSBTAP00000044404/1-526 Len: 526 Check: 4938 Weight: 1.00 // 1 50 ENSTTRP00000004250/1-526 MLQEESDLAL IIAQIVQKLK GSNLYAQLER QAWASLQRPE IKLESLKEDI bmy_09508T0/1-377 MLQEESDLAL IIAQIVQKLK GSNLYAQLER QAWASLQRPE IKLESLKEDI BACU002259/1-338 MLQEESDLAL IIAQIVQKLK GSNLYTQLER QAWASLQRPE IKLESLKEDI ENSP00000264866/1-526 MLQEESDLSL IIAQIVQKLK GSNLYSQLER QAWASLQRPE IKLESLKEDI ENSBTAP00000044404/1-526 MLQEESDLSL IIAQIVQKLK GSNLYAQLER QAWASLQRPE IKLESLKEDI 51 100 ENSTTRP00000004250/1-526 KEFFKISGWE KKLQNAVYSE LSVFPLPSHP AAPPEHLKEP LVYMRKAQGS bmy_09508T0/1-377 KEFFKISG-- ---------- --LFPLPSHP AAPPEHLKEP LVYMRKAQ-- BACU002259/1-338 KEFFKISGWE KKLQNAVYSE LSVFPLPSHP AAPPEHLKEP LVYMRKAQGS ENSP00000264866/1-526 KEFFKISGWE KKLQNAVYSE LSVFPLPSHP AAPPEHLKEP LVYMRKAQGS ENSBTAP00000044404/1-526 KEFFKISGWE KKLQNAVYSE LSVFPLPSHP AAPPEHLKEP LVYMRKAQGS 101 150 ENSTTRP00000004250/1-526 WEKRILKSLN SMCTELSIPL ARKRPVGEQK ELLNKWNEMG TDEPXXXXXX bmy_09508T0/1-377 ---------- ---------- ---------- ---------- ---------- BACU002259/1-338 WEKRILKSLN SMCTELSIPL ARKRPVGEQK ELLNKWNEMG TDEPDLSLFR ENSP00000264866/1-526 WEKRILKSLN SMCTELSIPL ARKRPVGEQK ELLNKWNEMG TDEPDLSLFR ENSBTAP00000044404/1-526 WEKRILKSLN SMCTELSIPL ARKRPVGEQK ELLNKWNEMG TDEPDLSLFR 151 200 ENSTTRP00000004250/1-526 XXXXXXXXXX VLINLRNPNY ENGDSHSFRT HLGLIQVPLK VKDIPELKEF bmy_09508T0/1-377 ---------- VLINLRNPNY ENGDSHSFRT HLGLIQVPLK VKDIPELN-- BACU002259/1-338 PVYAPKDFLE VLINLRNPNY ENGDSHSFRT HLGLIQVPLK VKDIPELKEF ENSP00000264866/1-526 PVYAPKDFLE VLINLRNPNY ENGDSLSFRT HLGLIQVPLK VKDIPELKEC ENSBTAP00000044404/1-526 PVYAPKDFLE VLINLRNPNY ESGDSLSFRT HLGLIQVPLK VKDIPELKEF 201 250 ENSTTRP00000004250/1-526 FVELGLTAGQ LGIDDSTQVP PELFENEHVR IGQKVLSEQD SAAAQQYIRQ bmy_09508T0/1-377 FLKMSMYV-- ---------- ---------- LGKK------ ---------- BACU002259/1-338 FVELGLTAGQ LGVDDSTQVP PELFENEHVR IGQKVLSEQD SAAAQQYIRQ ENSP00000264866/1-526 FVELGLNIGQ LGIDDSTQVP PELFENEHVR IGQKVLAEQD SAAAQQYIRQ ENSBTAP00000044404/1-526 FVELGLTTGQ LGIDDSTQVP PELFENEHVR IGQKVLTQQD SAAAQQYIRQ 251 300 ENSTTRP00000004250/1-526 GSPTALRAEL WALILNISSQ PEDILYYEQL KTNVIQHDLL VDSLIYKDVK bmy_09508T0/1-377 ---------- ---------- --DILYYEQL KTNVIQHDLL VDSLIYKDVK BACU002259/1-338 GSPTALRAEL WALILNISSQ PEDILYYEQL KTNVIQHDLL VDSLIYKDVK ENSP00000264866/1-526 GSPTALRAEL WALILNISSQ PEDVLYYEQL KTNVIQHDLL VDSLIYKDVK ENSBTAP00000044404/1-526 GSPTALRAEL WALILNISSH PEDILYYEQL KTNVIQHDLL VDSLIYKDVK 301 350 ENSTTRP00000004250/1-526 LTASNDDYYF VFEDYLYQXX XXXXXXXXXX XXXXXXXXXX XXXXXXXKLG bmy_09508T0/1-377 LTASNDDYYF VFEDYLYQVL LCFSRDTSVL GHFAYSSASP PKSYIRGKLG BACU002259/1-338 LTASNDDYYF VFEDYLYQVL LCFSRDTSVL GHFAYSSA-- ---------- ENSP00000264866/1-526 LTASNDDYYF VFEDYLYQVL LCFSRDTSVL SHFAFNSASP PKSYIRGKLG ENSBTAP00000044404/1-526 LTASNDDYYF VFEDYLYQVL LCFSRDTSVL SHFAYNSASP PKSYIRGKLG 351 400 ENSTTRP00000004250/1-526 LEEYAVFYPP NGVIPFHGFS MYVAPLCFLY HEPSKLYQIF REMYVRFFFR bmy_09508T0/1-377 LEEYAVFYPP N--------- --VAPLCFLY REPSKLYQIF REMYVRFFFR BACU002259/1-338 ---------- ---------- ---------- ---------- ---------- ENSP00000264866/1-526 LEEYAVFYPP NGVIPFHGFS MYVAPLCFLY HEPSKLYQIF REMYVRFFFR ENSBTAP00000044404/1-526 LEEYAVFYPP NGVIPFHGFS MYVAPLCFLY HEPSKLYQIF REMYVRFFFR 401 450 ENSTTRP00000004250/1-526 LHSISSHPSG IVSLCLLFET LLQTYLPQLF YHLREIGAQP LRISFKWMVR bmy_09508T0/1-377 LHSISSHPSG IVSLCLLFET LLQTYLPQLF YHLREIGAQP LRISFKWMVR BACU002259/1-338 ---------- ---------- ---------- ---------- ---------- ENSP00000264866/1-526 LHSISSHPSG IVSLCLLFET LLQTYLPQLF YHLREIGAQP LRISFKWMVR ENSBTAP00000044404/1-526 LHSISSHPSG IVSLCLLFET LLQTYLPQLF YHLREIGAQP LRISFKWMVR 451 500 ENSTTRP00000004250/1-526 AFSGYLATDQ LLLLWDRILG YNSLEILAVL AAAVFAFRAV NLMEVTSLAA bmy_09508T0/1-377 AFSGYLATDQ LLLLWDRILG YNSLEILAVL AAAVFAFRAV NLMEVTSLAA BACU002259/1-338 ---------- ---------- ---------- ---------- ---------- ENSP00000264866/1-526 AFSGYLATDQ LLLLWDRILG YNSLEILAVL AAAVFAFRAV NLMEVTSLAA ENSBTAP00000044404/1-526 AFSGYLATDQ LLLLWDRILG YNSLEILAVL AAAVFAFRAV NLMEVTSLAA 501 550 ENSTTRP00000004250/1-526 AEAVLADLST LKVMPLLQIF LFATVT bmy_09508T0/1-377 AEAVLADLST LKVMPLLQIF LFATVT BACU002259/1-338 ---------- ---------- ------ ENSP00000264866/1-526 AEAVLADLST LKVMPLLQIF LFATVT ENSBTAP00000044404/1-526 AEAVLADLST LKVMPLLQIF LFATVT