KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:55:59 2014 Check: 00 .. Name: ENSTTRP00000008188/1-603 Len: 636 Check: 6250 Weight: 1.00 Name: ENSP00000267425/1-636 Len: 636 Check: 9196 Weight: 1.00 Name: bmy_16962T0/1-537 Len: 636 Check: 161 Weight: 1.00 Name: ENSBTAP00000044409/1-636 Len: 636 Check: 2169 Weight: 1.00 // 1 50 ENSTTRP00000008188/1-603 MGLVPRSPHQ AGRRFPAGGK RGRGAKGSGR PPPGRQRQPC PPPDGRSEPA ENSP00000267425/1-636 MGQGPRSPHK VGRRFPAGGK RGRGAKGSGR PLPGRKRQPW PPPDGRSEPA bmy_16962T0/1-537 MGLGPRSPHQ EGRRFPAGGK RGRGAKGSGR PPPGRQRQPC PPPDGRSEPP ENSBTAP00000044409/1-636 MGLGPRSPHK QGRRFPAGGK RGRGAKGAGR PPPGRQRHPC SPPDGRSEPA 51 100 ENSTTRP00000008188/1-603 PDAHPHLSPE ALGYFRRALS ALKEVPETGE ERXXXXXXXX XXXXXXXXXX ENSP00000267425/1-636 PDSHPHLSPE ALGYFRRALS ALKEAPETGE ERDLMVHNIM KEVETQALAL bmy_16962T0/1-537 PDAHPHLSPE ALGYFRRALS ALKEVPETGE ERELMVHNVL KEVEAQALAL ENSBTAP00000044409/1-636 PDAHPHLSPE ALGYFRQALS ALKEAPETGE ERELMVHNVL KEVEAQALAL 101 150 ENSTTRP00000008188/1-603 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000267425/1-636 STNRTGSEML QELLGFSPLK PLCRVWAALR SNLRTVACHR CGVHVLQSAL bmy_16962T0/1-537 ATNRAGSEML QELLGFSPLK PLCRVWAALR PNLRFVACHR CGVHVLQSAL ENSBTAP00000044409/1-636 ATNRTGSEML QELLGFSPRK PMCRVWAALH SNLRFVACHR CGVHVLQSAL 151 200 ENSTTRP00000008188/1-603 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000267425/1-636 LQLPRLLGSA AEEEEEEEED GKDGPTETLE ELVLGLAAEV CDDFLVYCGD bmy_16962T0/1-537 LQLPRLLGSP A--EEEEEED GKDGPLETLE ELGLGLAAEV CDDFLFYCGD ENSBTAP00000044409/1-636 LQLPRLLGSP EEEEEEEEED GKDGHVETLE ELVLGLAAEV CDDFLFYCGD 201 250 ENSTTRP00000008188/1-603 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXAQRAPSR ECKATDFEVP ENSP00000267425/1-636 THGSFVVRTL LQVLGGTILE SERARPRGSQ SSEAQKTPAQ ECKPADFEVP bmy_16962T0/1-537 THGSFVVRTL LQVLGGTLLE SERARHRGSQ LPEAQRAPSR ECKATDFEVP ENSBTAP00000044409/1-636 THGSFVVRTL LQVLGGTLLE SERARHRGSQ SPEAQKAPSR ECKPTDFEVP 251 300 ENSTTRP00000008188/1-603 ETFLNCLQNL SSCFLKDIAV FITDKISSFC LQVALQILHR KLPQLCAHLC ENSP00000267425/1-636 ETFLNRLQDL SSSFLKDIAV FITDKISSFC LQVALQVLHR KLPQFCAHLC bmy_16962T0/1-537 ETFLNCLQNL SSCFLKDIAV FITDKISSFC LQVALQILHR KLPQFCAHLC ENSBTAP00000044409/1-636 ETFLNCLQNL SSCFLKDIAV FITDKISSFC LQVALQILHR KLPQFCAHLC 301 350 ENSTTRP00000008188/1-603 NAVMGYLSSR NSSADGXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000267425/1-636 NAVIGYLSTR GSSVDGSPLL LFLRDQTSSR LLEQVLLVLE PPRLQSLFEE bmy_16962T0/1-537 NAVMGYLSSR NSSADG---- ---------- ---------- ---------- ENSBTAP00000044409/1-636 SAVIGYLSSR NSSADGSPLL LFLRDQTSSR LLEQVLLVSE PPRLQSLFED 351 400 ENSTTRP00000008188/1-603 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000267425/1-636 HLQGQLQTLA AHPIANFPLQ RLLDAVTTPE LLSPVFEELS PVLEAVLAQG bmy_16962T0/1-537 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044409/1-636 HLQGHLQALA AHSIANFPLQ RFLDAITTPE LLSPVFEELS PALEAVLAQG 401 450 ENSTTRP00000008188/1-603 XXXXXXXXXX XXXXXXXXXX XXXXXXXXAF HCAEPSSRQV ACVPLFATLM ENSP00000267425/1-636 HPGVVIALVG ACRRVGAYQA KVLQLLLEAF HCAEPSSRQV ACVPLFATLM bmy_16962T0/1-537 ---------- ---RVGIHQA QVLQLLLEAF HCAEPSSRQV ACVPLFGTLM ENSBTAP00000044409/1-636 HPGVVIALVG ACRRVGTHQA QVLQLLLEAF HCAEPSSRQV ACVPLFAALM 451 500 ENSTTRP00000008188/1-603 TYEVYYGLAE EEGAVPAEHQ VEMATARDLG EVTVLGSLLL QHLLHFSSPV ENSP00000267425/1-636 AYEVYYGLTE EEGAVPAEHQ VAMAAARALG DVTVLGSLLL QHLLHFSTPG bmy_16962T0/1-537 TYEVYYGLAE EEGAVPAEHQ VEMATARDLG EVTVLGSLLL QHLLHFSSPG ENSBTAP00000044409/1-636 AYEVYYGLAE EEGAVPMEHQ VEMAAARGLG EVAVLGSLLL QHLLHFSSPC 501 550 ENSTTRP00000008188/1-603 IILRSLGALT GPQLLTLAQS PAGSHVLDAV LTSPSVTRKQ RRRVLKTLKG ENSP00000267425/1-636 LVLRSLGALT GPQLLSLAQS PAGSHVLDAI LTSPSVTRKL RRRVLQNLKG bmy_16962T0/1-537 LILRSLGALT GPQLLTLAQS PAGSHVLDAV LTSPSVTRKQ RRRVLKTLKG ENSBTAP00000044409/1-636 LILQSLSALT GPQLLTLAQS PAGSHVLDAV LTSPSVTRKQ RRRVLKTLKG 551 600 ENSTTRP00000008188/1-603 QYVALACSRH GSRVLDAIWS GAALGARKEI AAELGARNQE LI-DPF-HHV ENSP00000267425/1-636 QYVALACSRH GSRVLDAIWS GAALRARKEI AAELGEQNQE LIRDPFGHHV bmy_16962T0/1-537 QYVALACSRH GSRVLDAIWS GAALGARKEI AAELGARNQE LIRDPFGHHV ENSBTAP00000044409/1-636 HYVTLACSRH GSRVLDAIWS GAALGARKEI AAELGERNQE LIRDPFGHHV 601 650 ENSTTRP00000008188/1-603 ARNVA----- ---------- ---------- ------ ENSP00000267425/1-636 ARNVALTTFL KRREAWEQQQ GAVAKRRRAL NSILED bmy_16962T0/1-537 ARNVALTTFL KRREAWEQQQ GAVAKRRXAL NSILED ENSBTAP00000044409/1-636 ARNVALTTFL KRREAWEQEQ GAVAKRRRAL NSILED