KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:59 2014 Check: 00 .. Name: ENSTTRP00000008379/1-291 Len: 380 Check: 5519 Weight: 1.00 Name: ENSP00000445725/1-258 Len: 380 Check: 9728 Weight: 1.00 Name: ENSBTAP00000044412/1-259 Len: 380 Check: 4808 Weight: 1.00 Name: bmy_21061T0/1-347 Len: 380 Check: 8618 Weight: 1.00 Name: BACU007763/1-287 Len: 380 Check: 3792 Weight: 1.00 // 1 50 ENSTTRP00000008379/1-291 RGRAGGAPPA GRRAPSAGSR AAPGAGAEAD VPGMAKYQGE VHSLKLDDDS ENSP00000445725/1-258 ---------- ---------- ---------- ---MAKYQGE VQSLKLDDDS ENSBTAP00000044412/1-259 ---------- ---------- ---------- ---MAKYQGE VQSLKLDDDS bmy_21061T0/1-347 ---------- ---------- ---------- ---MAKYQGE VHSLKLDDDS BACU007763/1-287 -----MPCSA AWAHAESLCP WSKSAALICS RPGMAKYQGE VHSLKLDDDS 51 100 ENSTTRP00000008379/1-291 VIEGVSDQVL VAVVVSFALI ATLVYALF-R NAHQNIHPEN QELVRVLREQ ENSP00000445725/1-258 VIEGVSDQVL VAVVVSFALI ATLVYALF-R NVHQNIHPEN QELVRVLREQ ENSBTAP00000044412/1-259 VIEGVSDQVL VAVVVSLALI ATLVYALFSR NAHQNIHPEN QELVRVLREQ bmy_21061T0/1-347 VIEGVSDQVL VAVVVSFALI ATLVYALFSR NAHQNIHPEN QELVRVLREQ BACU007763/1-287 VIEGVSDQVL VAVVVSFALI ATLVYALFSR NAHQNIHPEN QELVRVLREQ 101 150 ENSTTRP00000008379/1-291 LQTEQDAPAA ARQQFYTDMY CPICLHQASL PVETNCGHLF CGTCIVAYWR ENSP00000445725/1-258 LQTEQDAPAA TRQQFYTDMY CPICLHQASF PVETNCGHLF CGACIIAYWR ENSBTAP00000044412/1-259 LQTEQDAPAA ARQQFYTDMY CPICLHQASL PVETNCGHLF CGTCIVAYWR bmy_21061T0/1-347 LQTEQDAPAA ARQQFYTDMY CPICLHQASL PVETNCGHLF CGTCIVAYWR BACU007763/1-287 LQTEQDAPAA ARQQFYTDMY CPICLHQASL PVETNCGHLF CGTCIVAYWR 151 200 ENSTTRP00000008379/1-291 YGSWLGAISC PICRQTXXXX XXXXXXXXXX XXXXXXXXXX XXXNRRFSGQ ENSP00000445725/1-258 YGSWLGAISC PICRQTVTLL LTVFGEDDQS QDVLRLHQDI NDYNRRFSGQ ENSBTAP00000044412/1-259 YGSWLGAISC PICRQTVTLL LPVFGENDQS QDVVSLHQDI SDYNRRFSGQ bmy_21061T0/1-347 YGSWLGAISC PICRQTVTLL LTVFGENDQS QDAVSLHQDI NDYNRRFSGQ BACU007763/1-287 YGSWLGAISC PICRQTVTLL LTVFGENDQS QDAVSLHQDI NDYNRRFSGQ 201 250 ENSTTRP00000008379/1-291 PRSIMERIMD LPTLLRHAFR EVFSVGGLFW MFRIRIILCL MGAFFYLISP ENSP00000445725/1-258 PRSIMERIMD LPTLLRHAFR EMFSVGGLFW MFRIRIILCL MGAFFYLISP ENSBTAP00000044412/1-259 PRSIMERIMD LPTLLRHAFR EMFSVGGLFW MFRIRIILCL MGAFFYLISP bmy_21061T0/1-347 PRSIMERIMD LPTLLRHAFR EVFSVGGLFW MFRIRIILCL MGAFFYLISP BACU007763/1-287 PRSIMERIMD LPTLLRHAFR EVFSVGGLFW MFRIRIILCL MGAFFYLISP 251 300 ENSTTRP00000008379/1-291 LDFVPEALFG ILGFLDDFFV VFLLLIYISI MYREVVT--- ---------- ENSP00000445725/1-258 LDFVPEALFG ILGFLDDFFV IFLLLIYISI MYREVIT--- ---------- ENSBTAP00000044412/1-259 LDFVPEALFG ILGFLDDFFV IFLLLIYISI MYREVIT--- ---------- bmy_21061T0/1-347 LDFVPEALFG ILGFLDDFFV VFLLLIYISI MYREMTEYSP DSSGLMQNEM BACU007763/1-287 LDFVPEALFG ILGFLDDFFV VFLLLIYISI MYREVVT--- ---------- 301 350 ENSTTRP00000008379/1-291 ---------- ---------- ---------- QRLNR----- ---------- ENSP00000445725/1-258 ---------- ---------- ---------- QRLTR----- ---------- ENSBTAP00000044412/1-259 ---------- ---------- ---------- QRLNR----- ---------- bmy_21061T0/1-347 IQQCHTYSYN TSIVIFGIPS KTFLVEAYQL EYINQSNSLD FRKQQYCNFQ BACU007763/1-287 ---------- ---------- ---------- QRLNR----- ---------- 351 400 ENSTTRP00000008379/1-291 ---------- ---------- ---------- ENSP00000445725/1-258 ---------- ---------- ---------- ENSBTAP00000044412/1-259 ---------- ---------- ---------- bmy_21061T0/1-347 KTDGPAPGAD DNLGSSVGRE TEETVVLTAH BACU007763/1-287 ---------- ---------- ----------