KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:01 2014 Check: 00 .. Name: ENSTTRP00000006963/1-844 Len: 873 Check: 711 Weight: 1.00 Name: ENSBTAP00000044478/1-844 Len: 873 Check: 4205 Weight: 1.00 Name: ENSP00000371532/1-873 Len: 873 Check: 4691 Weight: 1.00 Name: bmy_16395T0/1-868 Len: 873 Check: 3417 Weight: 1.00 Name: BACU019300/1-845 Len: 873 Check: 892 Weight: 1.00 // 1 50 ENSTTRP00000006963/1-844 ---------- ---------- --------RK AKCEPSQFQC TNGRCITLLW ENSBTAP00000044478/1-844 MGTSARWALW LLLLLCWAPR ESGATGAGRK AKCEANQFQC TNGRCITLLW ENSP00000371532/1-873 MGTSALWALW LLLALCWAPR ESGATGTGRK AKCEPSQFQC TNGRCITLLW bmy_16395T0/1-868 -----VTGIS NLPSLCPSLA KCSLLILGRK AKCEPSQFQC TNGRCITLLW BACU019300/1-845 ---------- ---------- --------RK AKCEPSQFQC TNGRCITLLW 51 100 ENSTTRP00000006963/1-844 KCDGDEDCAD GSDEKNCVKK TCAESDFVCN NGQCVPSRWQ CDGDPDCEDG ENSBTAP00000044478/1-844 KCDGDEDCTD GSDEKNCVKK TCAESDFVCN NGQCVPNRWQ CDGDPDCEDG ENSP00000371532/1-873 KCDGDEDCVD GSDEKNCVKK TCAESDFVCN NGQCVPSRWK CDGDPDCEDG bmy_16395T0/1-868 KCDGDEDCAD GSDEKNCVKK TCAESDFVCN NGQCVPNRWQ CDGDPDCEDG BACU019300/1-845 KCDGDEDCAD GSDEKNCVKK TCAESDFVCN NGQCVPNRWQ CDGDPDCEDG 101 150 ENSTTRP00000006963/1-844 SDESPEQCHM RTCRISEISC GARSTQCIPV SWRCDGENDC DSGEDEENCG ENSBTAP00000044478/1-844 SDESPEQCHM RTCRINEISC GARSTQCIPV SWRCDGENDC DSGEDEENCG ENSP00000371532/1-873 SDESPEQCHM RTCRIHEISC GAHSTQCIPV SWRCDGENDC DSGEDEENCG bmy_16395T0/1-868 SDESPEQCHM RTCRINEISC GARSTQCIPV SWRCDGENDC DSGEDEENCG BACU019300/1-845 SDESPEQCHM RTCRINEISC GARSTQCIPV SWRCDGENDC DSGEDEENCG 151 200 ENSTTRP00000006963/1-844 NVTCSPDEFT CSSGRCISRN FVCNGQDDCS DGSDELDCTP PTCGAHEFQC ENSBTAP00000044478/1-844 NVTCSSDEFT CSSGRCISRN FMCNGQDDCS DGSDELDCAP PTVGPTSSSA ENSP00000371532/1-873 NITCSPDEFT CSSGRCISRN FVCNGQDDCS DGSDELDCAP PTCGAHEFQC bmy_16395T0/1-868 NITCSPDEFT CSSGRCISRN FVCNGQDDCS DGSDELDCTP PTCGAHEFQC BACU019300/1-845 NITCSPDEFT CSSGRCISRN FVCNGQDDCS DGSDELDCTP PTCGAHEFQC 201 250 ENSTTRP00000006963/1-844 STSSCIPISW VCDDDADCSD QSDESLEQCG RQPVIHTKCP ASEIQCGSGE ENSBTAP00000044478/1-844 APS-CIPISW VCDDDADCSD QSDESLEQCG RQPVIHTRCP ASEIQCGSGE ENSP00000371532/1-873 STSSCIPISW VCDDDADCSD QSDESLEQCG RQPVIHTKCP ASEIQCGSGE bmy_16395T0/1-868 STSSCIPISW VCDDDADCSD QSDESLEQCG RQPVIHTKCP ASEIQCGSGE BACU019300/1-845 STSSCIPISW VCDDDADCSD QSDESLEQCG RQPVIHTKCP ASEIQCGSGE 251 300 ENSTTRP00000006963/1-844 CIHKKWRCDG DPDCKDGSDE VNCPSRTCQP DQFECEDGSC IHGSRQCNGI ENSBTAP00000044478/1-844 CIHKKWRCDG DPDCKDGSDE VNCPSRTCRP DQFECEDGSC IHGSRQCNGI ENSP00000371532/1-873 CIHKKWRCDG DPDCKDGSDE VNCPSRTCRP DQFECEDGSC IHGSRQCNGI bmy_16395T0/1-868 CIHKKWRCDG DPDCKDGSDE VNCPSRTCQP DQFECEDGSC IHGSRQCNGI BACU019300/1-845 CIHKKWRCDG DPDCKDGSDE VNCPSRTCQP DQFECEDGSC IHGSRQCNGI 301 350 ENSTTRP00000006963/1-844 RDCVDGSDEV NC-NXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000044478/1-844 RDCVDGSDEV NCKNVNQCLG PGKFKCRSGE CIDISKVCNQ KQDCRDWSDE ENSP00000371532/1-873 RDCVDGSDEV NCKNVNQCLG PGKFKCRSGE CIDISKVCNQ EQDCRDWSDE bmy_16395T0/1-868 RDCVDGSDEV NCKNVNQCLG PGKFKCRSGE CIDISKVCNQ EQDCRDWSDE BACU019300/1-845 RDCVDGSDEV NCKNVNQCLG PGKFKCRSGE CIDVSKVCNQ EQDCRDWSDE 351 400 ENSTTRP00000006963/1-844 XXXXXXVNEC LVNNGGCSHI CKDLVIGYEC DCAAGFELID RKTCGDIDEC ENSBTAP00000044478/1-844 PLKECHVNEC LVNNGGCSHI CKDLVIGYEC DCAAGFELID RKTCGDIDEC ENSP00000371532/1-873 PLKECHINEC LVNNGGCSHI CKDLVIGYEC DCAAGFELID RKTCGDIDEC bmy_16395T0/1-868 PLKECHVNEC LVNNGGCSHI CKDLVIGYEC DCAAGFELID RKTCGDIDEC BACU019300/1-845 PLKECHVNEC LVNNGGCSHI CKDLVIGYEC DCAAGFELID RKTCGDIDEC 401 450 ENSTTRP00000006963/1-844 QNPGICSQIC INLKGGYKCE CSRGYQMDLA TGVCKAVGKE PSLIFTNRRD ENSBTAP00000044478/1-844 QNPGICSQIC INLKGGYKCE CSRGYQMDLA TGVCKAVGKE PSLIFTNRRD ENSP00000371532/1-873 QNPGICSQIC INLKGGYKCE CSRGYQMDLA TGVCKAVGKE PSLIFTNRRD bmy_16395T0/1-868 QNPGICSQIC INLKGGYKCE CSRGYQMDLA TGVCKAVGKE PSLIFTNRRD BACU019300/1-845 QNPGICSQIC INLKGGYKCE CSRGYQMDLA TGVCKAVGKE PSLIFTNRRD 451 500 ENSTTRP00000006963/1-844 IRKIGLERKE YIQLVEQLRN TVALDADIGA QKLFWADLSQ KAIFSASIDD ENSBTAP00000044478/1-844 IRKIGLERKE YIQLVEQLRN TVALDADIAA QKLFWADLSQ KAIFSASIDD ENSP00000371532/1-873 IRKIGLERKE YIQLVEQLRN TVALDADIAA QKLFWADLSQ KAIFSASIDD bmy_16395T0/1-868 IRKIGLERKE YIQLVEQLRN TVALDADIAA QKLFWADLSQ KAIFSASIDD BACU019300/1-845 IRKIGLERKE YIQLVEQLRN TVALDADIAA QKLFWADLSQ KAIFSASIDD 501 550 ENSTTRP00000006963/1-844 KVGRHVKMID NVYNPAAIAV DWVYKTIYWT DAASKTISVA TLDGTKRKFL ENSBTAP00000044478/1-844 KVGRHVKMID NVYNPAAIAV DWVYKTIYWT DAASKTISVA TLDGTKRKFL ENSP00000371532/1-873 KVGRHVKMID NVYNPAAIAV DWVYKTIYWT DAASKTISVA TLDGTKRKFL bmy_16395T0/1-868 KVGRHVKMID NVYNPAAIAV DWVYKTIYWT DAASKTISVA TLDGTKRKFL BACU019300/1-845 KVGRHVKMID NVYNPAAIAV DWVYKTIYWT DAASKTISVA TLDGTKRKFL 551 600 ENSTTRP00000006963/1-844 FNSDLREPAS IAVDPLSGFV YWSDWGEPAK IEKAGMNGFD RRALVTADIQ ENSBTAP00000044478/1-844 FNSDLREPAS IAVDPLSGFV YWSDWGEPAK IEKAGMNGFD RRALVTADIQ ENSP00000371532/1-873 FNSDLREPAS IAVDPLSGFV YWSDWGEPAK IEKAGMNGFD RRPLVTADIQ bmy_16395T0/1-868 FNSDLREPAS IAVDPLSGFV YWSDWGEPAK IEKAGMNGFD RRALVTADIQ BACU019300/1-845 FNSDLREPAS IAVDPLSGFV YWSDWGEPAK IEKAGMNGFD RRALVTADIQ 601 650 ENSTTRP00000006963/1-844 WPNGITLDLI KGRLYWLDSK LHMLSSVDLN GQDRRVVLKS LEFLAHPLAL ENSBTAP00000044478/1-844 WPNGITLDLI KGRLYWLDSK LHMLSSVDLN GQDRRIVLKS LEFLAHPLAL ENSP00000371532/1-873 WPNGITLDLI KSRLYWLDSK LHMLSSVDLN GQDRRIVLKS LEFLAHPLAL bmy_16395T0/1-868 WPNGITLDLI KGRLYWLDSK LHMLSSVDLN GQDRRIVLKS LEFLAHPLAL BACU019300/1-845 WPNGITLDLI KGRLYWLDSK LHMLSSVDLN GQDRRIVLKS LEFLAHPLAL 651 700 ENSTTRP00000006963/1-844 TIFEDRVYWI DGENEAVYGA NKFTGSELAT LVNNLNDAQD IIVYHALVQP ENSBTAP00000044478/1-844 TIFEDRVYWI DGENEAVYGA NKFTGSELAT LVNNLNDAQD IIVYHELVQP ENSP00000371532/1-873 TIFEDRVYWI DGENEAVYGA NKFTGSELAT LVNNLNDAQD IIVYHELVQP bmy_16395T0/1-868 TIFEDRVYWI DGENEAVYGA NKFTGSELAT LVNNLNDAQD IIIYHALVQP BACU019300/1-845 TIFEDRVYWI DGENEAVYGA NKFTGSELAT LVNNLNDAQD IIIYHALVQP 701 750 ENSTTRP00000006963/1-844 SGKNWCKEDM ENGGCEYLCL PAPQINDHSP KYTCSCPNGY RLEDNGRECQ ENSBTAP00000044478/1-844 SGKNWCEEDV ENGGCEYLCL PAPQINDHSP KYTCSCPNGY NLEDNGRECH ENSP00000371532/1-873 SGKNWCEEDM ENGGCEYLCL PAPQINDHSP KYTCSCPSGY NVEENGRDCQ bmy_16395T0/1-868 SGKNWCEEDM ENGGCEYLCL PAPQINDHSP KYTCSCPNGY NLEDNGRECQ BACU019300/1-845 SGKNWCEEDM ENGGCEYLCL PAPQINDHSP KYTCSCPNGY NLEDNGRECQ 751 800 ENSTTRP00000006963/1-844 STATTVTHSE TKDTNTTEMS PTSGLAPGEI NVTTAVSEVS VPPKGTSAAW ENSBTAP00000044478/1-844 R--------- ---------- ---------I NVTTAVSEVS VPPKGTSAAW ENSP00000371532/1-873 STATTVTYSE TKDTNTTEIS ATSGLVPGGI NVTTAVSEVS VPPKGTSAAW bmy_16395T0/1-868 STATTVTYSE TKDTNTTEMS PTSGLAPGEI NVTTAVSEVS VPPKGTSAAW BACU019300/1-845 STATTVTYSE TKDTNTTEMS PTSGLAPGEI NVTTAVSEVS VPPKGTSAAW 801 850 ENSTTRP00000006963/1-844 AILPLLLLAM AAVGGYLMWR NWQHKNMKSM NFDNPVYLKT TEEDLSIDIG ENSBTAP00000044478/1-844 AILPLLLLAM AAVGGYLMWR NWQHKNMKSM NFDNPVYLKT TEEDLSIDIG ENSP00000371532/1-873 AILPLLLLVM AAVGGYLMWR NWQHKNMKSM NFDNPVYLKT TEEDLSIDIG bmy_16395T0/1-868 AILPLLLLAM AAVGGYLMWR NWQHKNMKSM NFDNPVYLKT TEEDLSIDIG BACU019300/1-845 AILPLLLLAM AAVGGYLMWR NWQHKNMKSM NFDNPVYLKT TEEDLSIDIG 851 900 ENSTTRP00000006963/1-844 RHSASVGHTY PAISVVSTDD DLA ENSBTAP00000044478/1-844 RHSASVGHTY PAISVVSTDD DLA ENSP00000371532/1-873 RHSASVGHTY PAISVVSTDD DLA bmy_16395T0/1-868 RHSASVGHTY PAISVVSTDD DLA BACU019300/1-845 RHSASVGHTY PAISVVSTDD DLA