KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:04 2014 Check: 00 .. Name: ENSP00000380450/1-376 Len: 399 Check: 6110 Weight: 1.00 Name: ENSBTAP00000044503/1-356 Len: 399 Check: 7059 Weight: 1.00 Name: ENSTTRP00000010810/1-379 Len: 399 Check: 2809 Weight: 1.00 Name: bmy_02700T0/1-376 Len: 399 Check: 3065 Weight: 1.00 Name: BACU009215/1-359 Len: 399 Check: 548 Weight: 1.00 // 1 50 ENSP00000380450/1-376 MAGPRYPVSV QGAALVQIKR L-QTFAFSVR WSDGSDTFVR RSWDEFRQLK ENSBTAP00000044503/1-356 MEGARHPVCV SGAALVQTER FQQMFTFSVC WSDDTDSFIR RSWEDFRRLH ENSTTRP00000010810/1-379 MAGPRHPVSV SGAALVQTDR L-QMFAFSVC WSDDSDTFAR RSWEEFRRLH bmy_02700T0/1-376 MAGPRHPVSV SGAALVQTDR L-QTFAFSVC WSDDSDTFAR RSWEEFRRLH BACU009215/1-359 MAGPRHPVSV SGAAMVQTDR L-QTFTFSVC WSDDSDTFAR RSWEEFRRLH 51 100 ENSP00000380450/1-376 ---------- ------KTLK ETFPVEAGLL RRSDRVLPKL LGQASLDAPL ENSBTAP00000044503/1-356 ---------- ------KTLK ETFPVEAGLL RRSDRVLPKL PA----DAPW ENSTTRP00000010810/1-379 ---------- ------KTLK ETFPVEAGLL QRSDRILPKL TGQASKDASL bmy_02700T0/1-376 GNQWALGDRH APSRPQKTLK ETFPVEAGLL RRSDRILPKL P-----DASL BACU009215/1-359 ---------- ------KTLK ETFPVEAGLL RRSDRILPKL P-----DASL 101 150 ENSP00000380450/1-376 LGRVGRTSRG LARLQLLETY SRRLLATAER VARSPTITGF FAPQPLDLEP ENSBTAP00000044503/1-356 LVHRSRTGRG LARLQLLEAY LRALLAAGER VSRSLELTGF FTPQPLDLEP ENSTTRP00000010810/1-379 LVHWGRTGRG LARLQLLETY SRALLATGER VTHSPVLTGF FAPQPMDLEP bmy_02700T0/1-376 LVHWGCTGRG LARLQLLETY SRALLAAGER VAHSPVLTGF FAPQPMDLEP BACU009215/1-359 LVHWGRTGRG LARLQLLETY SRALLTAGER VAHSPVLTGF FAPQPMDLEP 151 200 ENSP00000380450/1-376 ALPPGSRVIL PTPEEQPLSR AAGRLSIHSL EAQSLRCLQP FCTQDTRDRP ENSBTAP00000044503/1-356 MLPPGSLVIL PTPQE-PSPG PSGSPAVHTL EAQSLHCLQT FSTQDTRGQP ENSTTRP00000010810/1-379 VLPAGSLVIL PAPQE-PLPG PTGSPAIRSQ EAQSLHCLQP FSTQDTWGQP bmy_02700T0/1-376 ALPAGSLVIL PAPQE-PLPG PTGSAAIHSL EAQSLRCLQP FSTQDTWGQP BACU009215/1-359 ALPAGSLVIL PAPQE-SLPG PTGSPAIRSL EAQSLRCLQP FSTQDTWGQP 201 250 ENSP00000380450/1-376 FQAQAQESLD VLLRHPSG-- WWLVENEDRQ TAWFPAPYLE EAAPGQGREG ENSBTAP00000044503/1-356 FHAQAQEALD VLLRHPSGIG WWLVTNEDQQ TAWFPAPYLE EAAPHQGQDG ENSTTRP00000010810/1-379 FHARAQEALD VLLRHPSG-- WWLVANEDQQ MAWFPAPYLE EVALGQGRDG bmy_02700T0/1-376 FHAQAQEALD VLLRHPSG-- WWLVVNEDQQ TAWFPAPYLE EVALGQGRDG BACU009215/1-359 FHARAQEALD VLLRHPSG-- WWLVANEDQQ TAWFPAPYLE EVALGQGRDG 251 300 ENSP00000380450/1-376 GPSLGSSGPQ FCASRAYESS RADELSVPAG ARVRVLETSD RGWWLCRYGD ENSBTAP00000044503/1-356 GQLLGISGPQ FCAVRAYESS RADELSVPTG ARVHVLEASD RGWWLCRFQG ENSTTRP00000010810/1-379 EWSLGSSGYQ FCASHSYESS QADELSVTTG ARVRVLETSD CGWWLCRFQG bmy_02700T0/1-376 ERPLGSSGSQ FCASHAYESS QADELSVPTG ARVRVLETSD RGWWLCRFRG BACU009215/1-359 ERSLGSSGSQ FCASHAYESS QADELSVPAG ARVHVLETSD RGWWLCRFRG 301 350 ENSP00000380450/1-376 RAGLLPAVLL RPEGLGALLS GT----GFRG GDDPAGEARG FPEPSQATAP ENSBTAP00000044503/1-356 RTGLLPAVML QRDGLGTLLS GPWLHRGADG AEGREGKAHS SPRSPQAAML ENSTTRP00000010810/1-379 RTGLLPAAIL QPDGLGTLLS GPWLHLRVDG GEDREGEAQS SPKSPQATTL bmy_02700T0/1-376 RTGLLPAAML QPDRLGTLLS GPWLHLRVDG GEDREGEAQS SPKSPQATTL BACU009215/1-359 RTGLLPAAML QPDGLGTLLS GPWLHLRVDG GEDREGKAQS S-KSPQATTL 351 400 ENSP00000380450/1-376 PPTVPTRPSP GAIQSRCCTV TRRALERRPR RQGRPRGCVD SVPHPTTEQ ENSBTAP00000044503/1-356 PPPVPARPPL SVIQSRCCTI TRKALQQ--- ---------- --------- ENSTTRP00000010810/1-379 PPTVPARPSR SAIQSCCCTI TCEALGQDPG CHGPPECVAS ALHPTAERQ bmy_02700T0/1-376 PPTVPARPSR SAIQSRCCTI TRKALGQDPG CHGPP----- --------- BACU009215/1-359 PPTVPARPSR SAIQSCCCTI TRKALGQDPG CHGPP----- ---------