KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:56:06 2014 Check: 00 .. Name: ENSBTAP00000044507/1-1792 Len: 1933 Check: 2047 Weight: 1.00 Name: ENSTTRP00000014245/1-1860 Len: 1933 Check: 7013 Weight: 1.00 Name: bmy_02576T0/1-1356 Len: 1933 Check: 465 Weight: 1.00 Name: BACU016700/1-1779 Len: 1933 Check: 480 Weight: 1.00 // 1 50 ENSBTAP00000044507/1-1792 ---------- ---------- ------MWGA QLGPLLRFLL LLLSPRDGVR ENSTTRP00000014245/1-1860 MAPGALRGGC EQRAPYPGAA APRSRKMWVA LLWPLLRLLL LLLSPRDGVR bmy_02576T0/1-1356 ---------- ---------- ------MWVA LLRPLLRLLV LLLSPRDGVR BACU016700/1-1779 ---------- ---------- ------MWVA LLRPLLRLLV LLLSPRDGVR 51 100 ENSBTAP00000044507/1-1792 AEQPQAPGYL IAAPSVFRSG VEEAISVTIF NSPREVMVQA QLVALGKAVA ENSTTRP00000014245/1-1860 AAQPQAPGYL IAAPSVFRSG VEEVISVTIF NSPREVMVQA QLVAQGEAVA bmy_02576T0/1-1356 AAQPQAPGYL IAAPSVFRSG VEEVISVTIF NSPREVMVQA QLVAQGEAVA BACU016700/1-1779 AAQPQAPGYL IAAPSVFRSG VEEVISVTIF NSPREVMVHA QLVAQGEAVA 101 150 ENSBTAP00000044507/1-1792 QSQGAIQDKG TIKLKVPTGL RGQALLKVWG RDWRVEEGPL FHNQTSVTVD ENSTTRP00000014245/1-1860 QSQGAILDKG TIKLKVPTGL WGQALLKVWG RGWWAEEGPF FHNQTSVTVD bmy_02576T0/1-1356 QSQGAILDKG TIKLKVPTGL WGQALLKVWG RGWWAEEGPF FHNQTSVTVD BACU016700/1-1779 QSQGAILDKG TIKLKVPTGL WGQALLKVWG RGWWAEEGPF FHNQTSVTVD 151 200 ENSBTAP00000044507/1-1792 SRGASVFIQT DKPVYRPKHR VLISIFTVTP DLRPTSEKLE AYILDPRGSR ENSTTRP00000014245/1-1860 SRGASVFIQT DKPVYRPQHR VLISIFTVTP DLRPVSEKLE AYVLDPRGSR bmy_02576T0/1-1356 SRGASVFIQT DKPVYRPQHR VLISIFTVTP DLRPVSEKLE AYVLDPRGSR BACU016700/1-1779 SRGASVFIQT DKPVYRPQHR VLVSVFTVTP DLRPVSEKLE AYVLDPRGSR 201 250 ENSBTAP00000044507/1-1792 MMEWRHLEPL CCGITNMTFP LSDQPVLGEW FVFVEMQSHV FNRSFEVQKY ENSTTRP00000014245/1-1860 MMEWRHLQPL CCGITNMTFP LSDQPVLGEW FVFVEMQGHV YNKSFEVQKY bmy_02576T0/1-1356 MMEWRHLQPL CCGITNMTFP LSDQPVLGEW FIFVEMQGHV YNKSFEVQKY BACU016700/1-1779 MMEWRHLQPL CCGITNMTFP LSDQPVLGEW FIFVEMQGHV YNKSFEVQKY 251 300 ENSBTAP00000044507/1-1792 VLPKFELLID PPAYIRDLDT CETGTVQARY TFGKPVSGTL TINMTVNGVG ENSTTRP00000014245/1-1860 VLPKFELLID PPRYIQDLDT CETGTVRARY TFGKPVSGTL TINMTVNGVG bmy_02576T0/1-1356 VLPKFELLID PPRYIQDLDT CETGTVRARY TFGKPVSGTL TINMTVNGVG BACU016700/1-1779 VLPKFELLID PPRYIQDLDT CETGTVRARY TFGKPVSGTL TINMTVNGVG 301 350 ENSBTAP00000044507/1-1792 YYSQEVGRPI LRTTKIHGSQ DFSICVKDMI PADVPEHFRG TISIWATVTA ENSTTRP00000014245/1-1860 YYSQEVGRPI LRTTKIHGSQ DFNICVKDMI LADVPEHFRG TVSIWAMVTS bmy_02576T0/1-1356 YYSQEVGRPI LRTTKIHGSQ DFNICVKDMI LADVPEHFRG TVSIWAMVTS BACU016700/1-1779 YYSQEVGRPI LRTTKIHGSQ DFNICVKDMI LADVPEHFRG TVSIWAMVTS 351 400 ENSBTAP00000044507/1-1792 VDGSHQVAFD DSTPVQRQLV DVRYSKDTRK QFKPGLSYVG KVELSYPDGS ENSTTRP00000014245/1-1860 TDGSQQVAFD DSTPVQRQLV DVRYSKDTRK QFKPGLSYVG KVELSYPDGS bmy_02576T0/1-1356 TDGSQQVAFD DSTPVQRQLV DVRYSKDTRK QFKPGLSYVG K--------- BACU016700/1-1779 TDGSQQVAFD DSTPVQRQLV DVRYSKDTRK QFKPGLSYVG K--------- 401 450 ENSBTAP00000044507/1-1792 PAEGVTVQIR AELTPKDNIY TVESVSQGGL VEFEIPSIPM SAQHVWLETK ENSTTRP00000014245/1-1860 PAEGVTVQIR TELTPKDNIY TTESVSRGGL VGFEIPSIPV SAQHVWLETK bmy_02576T0/1-1356 ---------- ---------- ---------- ---------- ---------- BACU016700/1-1779 ---------- ---------- ---------- ---------- --------TK 451 500 ENSBTAP00000044507/1-1792 VTALSGKPVG AQYLPSYLSL SSWYSPSQCY LQLQPPSHPL QVGEDAYFPV ENSTTRP00000014245/1-1860 VTALGGKLVG AQYLPSYLSL SSWYSPSQCY LQLQPPSLPL QVGEDAHFPV bmy_02576T0/1-1356 ---------- ---------- ---------- ---------- ---------- BACU016700/1-1779 VTALGGKLVG AQYLPSYLSL SSWYSPSQCY LQLQPPSLPL QVGEDAHFPV 501 550 ENSBTAP00000044507/1-1792 KSTCPCNFTL YYEVAARGNI VLSGQQPAHV TQQRSKRAAL EKPIRLMHLS ENSTTRP00000014245/1-1860 KSTCPCNFTL YYEVAARGNI VLSGQQPAHI TQQRSKRAAP EKPIRLTHLS bmy_02576T0/1-1356 ---------- ---------- ---------- ---------- ---------- BACU016700/1-1779 KSTCPCNFTL YYEVAARGNI VLSGQQPAHI TQQRSKRAAP EKPIRLMHLS 551 600 ENSBTAP00000044507/1-1792 ETEPPPAPAA EVSVCMTSLQ LAVTPSMVPL GRLLVFYVRE NGEGVADSLQ ENSTTRP00000014245/1-1860 ETEPSPAPAA EVSVCVTSLR LTVTPSMVPL GRLLAFYVRE NGEGVADSLQ bmy_02576T0/1-1356 ---PSPAPAA EVNVCVTSLR LTVTPSMVPL GRLLAFYVRE NGEGVADSLQ BACU016700/1-1779 ET----APAA EVNVCVTSLR LTVTPSMVPL GRLLAFYVRE NGEGVADSLQ 601 650 ENSBTAP00000044507/1-1792 FTVETFFENQ VSLTYSANET QPGEVVDLRL KAARGSCVCV AAVDKSVYLL ENSTTRP00000014245/1-1860 FAVETFFENQ VSLTYSANET QPGEVVDLRV RAARGSCVCV AAVDKSIYLL bmy_02576T0/1-1356 FAVETFFEN- ---------- ---------- ---------- ---------- BACU016700/1-1779 FAVETFFENQ VSLTYSANET QPGEVIDLRV RAARGSCVCV AAVDKSIYLL 651 700 ENSBTAP00000044507/1-1792 RSGFRLTPAQ VFRELEDYDV SDIFGVSRED GPFWWTGLTA RRRRRSSVFL ENSTTRP00000014245/1-1860 RSGFRLTPTQ VFRELEDYDV SDAFGVSRED GPFWWAGLMA RRRRRSSIFL bmy_02576T0/1-1356 ---------Q VFRELEDYDV SDAFGVSRED GPFWWAGLMA RRRRRSSIFL BACU016700/1-1779 RSGFRLTPTQ VFRELEDYDV SDAFGVSRED GPFWWAGLMA RRRRRSSIFL 701 750 ENSBTAP00000044507/1-1792 WPWGVTKDSG FAFAETGLVV MTDLVSLNHR QDGGLYTDEA VPAFQPHTGS ENSTTRP00000014245/1-1860 WPWGVTKDSG FAFAETGLVV MTDLVSLNHR QDGGLYTDEA VPAFQPHTGS bmy_02576T0/1-1356 WPWGVTKDSG FAFA------ ---------- ---------- ---------- BACU016700/1-1779 WPWGVTKDSG FAFAETGLVV MTDLVSLNHR QDGGLYTDEA IPAFQPHTGS 751 800 ENSBTAP00000044507/1-1792 LMAAVSSRQP PRAEKRKRTF FPETWVWHCL NISDPSGEET LSVQVPDSIT ENSTTRP00000014245/1-1860 LMAAVSSRQS PRAEKKKRTY FPETWIWHCL NISDPSGEDT LSVQVPDSIT bmy_02576T0/1-1356 ---------- ---------- ---------- ---------- ---------- BACU016700/1-1779 LMAAVSSRQP PRAEKRKRTY FPETWIWHCL NISDPSGEDT LSVRVPDSIT 801 850 ENSBTAP00000044507/1-1792 SWVGEAVGLS PGRGLGIAEP TLLKTFKPFF IDFTLPPYVV RGEQAKIPLS ENSTTRP00000014245/1-1860 SWVGEAVGLS AERGLGIAEP TLLKTFKPFF VDFTLPPNVV RGEQAKIPLS bmy_02576T0/1-1356 ---------- ---------- ---------- ---------- ---------- BACU016700/1-1779 SWVGEAVGLS AERGLGIAEP TLLKTFKPFF VDFTLPPNVV RGEQAKIPLS 851 900 ENSBTAP00000044507/1-1792 IYNYMDTCAE VYMKISVPKG IQFVGHPGKR HLTKKMCVAS GETEPMWVVL ENSTTRP00000014245/1-1860 IYNYMDTCVE VYVKISVPKG IQFVGHPGKR HLTKKTCVVP GEMEPSWVVL bmy_02576T0/1-1356 ---------- VYVKISVPKG IQFVGHPGKR HLTKKTCVVP GEMEPSWVVL BACU016700/1-1779 IYNYMDTCVE VYVKISVPKG IQFVGHPGKR HLTKKTCVVP GEMEPSWVVL 901 950 ENSBTAP00000044507/1-1792 SFGDLGLSNI TAKALAYRET SCCRDGKSVR PPEENYADRR VPIGRDHIRC ENSTTRP00000014245/1-1860 SFGDLGLSNI TAKALAYRET SCCRDGKSIR TPEENYADRR VPIGRDHIRR bmy_02576T0/1-1356 SFGDLGLSNI TA--VSY--V CSIHWSRSVQ TALEDRSLK- ---------- BACU016700/1-1779 SFGDLGLSNI TGGI-----S RCTEKDSLIL KPFLPFMLFS SALRLQHSLV 951 1000 ENSBTAP00000044507/1-1792 SVMVE----- -PEGAPRSYT YSAFFCPNER VHISTPNKYE FQYVQRPLRL ENSTTRP00000014245/1-1860 GVMVE----- -PEGAPRSYT YSAFFCPNER VHISTPNKYE FQYVQRPLRL bmy_02576T0/1-1356 ----E----- -PPG------ ---------- ---HTPT--- ---------- BACU016700/1-1779 QLCTDDTGGQ EPEGAPRSYT YSAFFCPNER VHISTPNKYE FQYVQRPLRL 1001 1050 ENSBTAP00000044507/1-1792 TRFDVAVRAH NDARVALSPG PQDTAGMIEI VLGGHQNTRS WISTSKMGEP ENSTTRP00000014245/1-1860 THFDVAVRAH NDARVALSPG PQDTAGMIEI VLGGHQNTRS WISTSKMGEP bmy_02576T0/1-1356 ---------- -----ALSSV PM-------- ---------- ---------- BACU016700/1-1779 THFDVAVRAH NDARVALSPG PQDTAGMIEI VLGGHQNTRS WISTSKMGEP 1051 1100 ENSBTAP00000044507/1-1792 VASTPTAKIL SWDEFRTFWI SWHSGLIQ-- -----VGHGP EPSNESVIMA ENSTTRP00000014245/1-1860 VASTHTAKIL SWDEFRTFWI SWHSGLIQ-- -----VGHGP EPSNDSVIMA bmy_02576T0/1-1356 ---------- ---------- ---------- -----VGHGP EPSNDSVIMA BACU016700/1-1779 VASTHTAKIL SWDEFRTFWI SWHNGLIQAW LGFPGVGHGP EPSNDSVIMA 1101 1150 ENSBTAP00000044507/1-1792 WTLPKPPEVQ FIGFSTGWGS VGEFRIWRKV EADESYSEAF TLGVPHSAIP ENSTTRP00000014245/1-1860 WTLPKTPEVQ FIGFSTGWGS VGEFRIWRKV EVDESYSEAF TLGVPHSAIP bmy_02576T0/1-1356 WTLPKPPEVQ FIGFSTGWGS VGEFRIWRKV EVDESYSEAF TLGVPHSAIP BACU016700/1-1779 WTLPKPPEVQ FIGFSTGWGS VGEFRIWRKV EVDESYSEAF TLGVPHSAIP 1151 1200 ENSBTAP00000044507/1-1792 GSERAAASII GDVMGPTLNH LSNLLRLPFG CGEQNMIHFA PNVFVLKYLQ ENSTTRP00000014245/1-1860 GSERAAAAII GDVMGPTLNH LSNHLRLPFG CGEQNMIHFA PNVFVLKYLQ bmy_02576T0/1-1356 GSERAAASII GDVMGPTLNH LSNHLRLPFG CGEQNMIHFA PNVFVLKYLQ BACU016700/1-1779 GSERAAASII GDVMGPTLNH LSNHLRLPFG CGEQNMIHFA PNVFVLKYLQ 1201 1250 ENSBTAP00000044507/1-1792 KTRQLSPEVE RETTDHLVQG YQRQLTYKHQ DGSYSAFGER DESGSMWLTA ENSTTRP00000014245/1-1860 KTRQLSPEVE RETTDYLVQG YQRQLTYKHQ DGSYSAFGER DKSGSMWLTA bmy_02576T0/1-1356 KTRQLSPEVE RETTDYLVQG YQRQLTYKHQ DGSYSAFGER DKSGSMWLTA BACU016700/1-1779 KTRQLSPEVE RETTDYLVQG YQRQLTYKHQ DGSYSAFGER DKSGSMWLTA 1251 1300 ENSBTAP00000044507/1-1792 FVLKSFAQAR SFIFIDPLEL EAAKDWIVQQ QQADGSFPAV GRILNKDIQG ENSTTRP00000014245/1-1860 FVLKSFAQAR SFIFIDPQEL AAAKGWIVQQ QRADGSFPAV GRILNKDIQG bmy_02576T0/1-1356 FVLKSFAQAR SFIFIDPQEL AAAKGWIVQQ QRADGSFPAV GRILNKDIQG BACU016700/1-1779 FVLKSFAQAR SFIFIDPQEL AAAKGWIVQQ QRADGSFPAV GRILNKDIQG 1301 1350 ENSBTAP00000044507/1-1792 GIHGTVPLTA YVVAALLEVD PASEEERGAI TKARHFLESS ASLVTDPYSS ENSTTRP00000014245/1-1860 GIHGTVPLTA YVVAALLEMG LASEEERGAI AKARHFLESS APLATDPYSS bmy_02576T0/1-1356 GIHGTVPLTA YVVAALLEMG LASEEERGAI AKARHFLESG APLAVDPYSS BACU016700/1-1779 GIHGTVPLTA YVVAALLEMG LAS------- -------EPG APLAVAPYSS 1351 1400 ENSBTAP00000044507/1-1792 ALTAYALTLL RSPAAPAALR KLRSLAITQD GVTHWSLTGS RDVDKDAFLS ENSTTRP00000014245/1-1860 ALTAYALTLL RSPAAPAALR KLRSLAITQD GVTHWS-TGS RDVDKDAFVS bmy_02576T0/1-1356 ALTAYALTLL RSPAAPAALR KLRSLAITQD GVTHWSLTGS RDVDKDAFLS BACU016700/1-1779 ALTASALPLL RSPAAPAALR KLRSLAITQD GVTHWSLTGS RDVDKDAFLS 1401 1450 ENSBTAP00000044507/1-1792 FSDGVYQTVV SAEVEMTAYA LLTYTLLGDV ATALPVVKWL SQQRNALGGF ENSTTRP00000014245/1-1860 FSDGVYQTVV SAEVEMTAYA LLTYTLLGDV ATALPVVKWL SQQRNALGGF bmy_02576T0/1-1356 FSDGVYQTVV SAEVEMTAYA LLTYTLLGDV ATALPVVKWL SQQRNALGGF BACU016700/1-1779 FSDGVYQTVV SAEVEMTAYA LLTYTLLGDV ATALPVVKWL SQQRNALGGF 1451 1500 ENSBTAP00000044507/1-1792 SSTQDTCVAL QALAEYAILS YAGGVNLTVS LASTNLDYQE TFELHRGNQK ENSTTRP00000014245/1-1860 SSTQDTCVAL QALAEYAILS YAGGINLTVS LASTNLDYQE TFELHRANQK bmy_02576T0/1-1356 SSTQDTCVAL QALAEYAILS YAGGINLTLS LASTNLDYQE TFELHRANQK BACU016700/1-1779 SSTQDTCVAL QALAEYAILS YAGGINLTVS LASTNLDYQE TFELHRANQK 1501 1550 ENSBTAP00000044507/1-1792 LLQMAA--IP SLPTGLFVSA RGEGCCLM-- ---------- ---------- ENSTTRP00000014245/1-1860 LLQMAA--IP SLPTGLFVSA KGEGCCLM-- ---------- ---------- bmy_02576T0/1-1356 LLQMAAVRVP RTRVGGWAAM AAPPCCLSVH VCLWGKPRHL LSPDPQPPHR BACU016700/1-1779 LLQMAA--IP SLPTGLFVSA KGEGCCLM-- ---------- ---------- 1551 1600 ENSBTAP00000044507/1-1792 ---------- ---------- -QIDVTYNVP DPVAKPSFQL LVNLQEPEAE ENSTTRP00000014245/1-1860 ---------- ---------- -QIDVTYNVP DPVAKPSFQL LVNLQEPEAE bmy_02576T0/1-1356 AVRERQGRRL LPDAASVLPP PQIDVTYNVP DPVAKPSFQL LVNLQEPEAE BACU016700/1-1779 ---------- ---------- -QIDVTYNVP DPVAKPSFQL LVNLQEPEAE 1601 1650 ENSBTAP00000044507/1-1792 QQRPPSPASS ADDDDPAADQ HHQEYQVTLE VCTRWLHAGS SNMAVLEVPL ENSTTRP00000014245/1-1860 -RRPPAPASS ADDDDPAADQ HQQEYPVTLE VCTRWLHAGS SNMAVLEVPL bmy_02576T0/1-1356 -RRPPAPASS ADDDDPAADQ HQQEYPVTLE VCTRWLHTGS SNMAVLEVPL BACU016700/1-1779 -RRPPAPASS ADDDDPAADQ HQQEYPVTLE VCTRWMHTGS SNMAVLEVPL 1651 1700 ENSBTAP00000044507/1-1792 LSGFRADVES LEQLLLDKHV ALKRYELAGR RVLFYFDEIP SRCLTCVQFR ENSTTRP00000014245/1-1860 LSGFRADIES LEQLLLDKHV ALKRYEVAGR RVLFYFDEIP SECLTCVRFR bmy_02576T0/1-1356 LSGFRADVES LEQLLLDKHV ALKRYEVAGR RVLFYFDEIP SGCLTCVRFR BACU016700/1-1779 LSGFRADVES LEQLLLDKHV ALKRYEVAGR RVLFYFDEIP SGCLTCVRFR 1701 1750 ENSBTAP00000044507/1-1792 ALREHVVGRT SALPILVYDY YEPAFEATRF YNVSARSPLA RELCAGPACN ENSTTRP00000014245/1-1860 ALRQHVVGRT SALPISVYDY YEPAFEATRF YNVSSRSPLA RELCAGPACN bmy_02576T0/1-1356 ALRQHVVGRT SALPISVYDY YEPAFEATRF YNVSSRSPLA RELCAGPACN BACU016700/1-1779 ALRQHVVGRT SALPISVYDY YEPAFEATRF YNVSSRSPLA RELCAGPACN 1751 1800 ENSBTAP00000044507/1-1792 EVERALAQGP GWSPEERGPV AVPEEGVTVT RCGCARACSI SGEPVCGSDG ENSTTRP00000014245/1-1860 EVERSLAQGP GWSPGEAGPA AIPEEGTKIT RCGCARDCTT SRDPVCGSDG bmy_02576T0/1-1356 EVERALAQGP GWSPGEGGPA AIPEEGTKIT RCGCARDCAT SGDPVCGSDG BACU016700/1-1779 EVERALAQGP GWSPGEGGPA AIPEEGTKIT RCGCARDCAT SGDPVCGSDG 1801 1850 ENSBTAP00000044507/1-1792 VVYASACHLQ EAACRRRVRL EPAPPGRCAL EQPTPALALY SYEYDLGPLD ENSTTRP00000014245/1-1860 VVYASTCHLQ EAACRERVRL EPAPPGRCAL EQPTPASALY SYDYDLGPLD bmy_02576T0/1-1356 VVYATTCHLQ EAACRGRVRL EPAPPSRCAL EQPTPASALY SYDYDLGPLD BACU016700/1-1779 VVYASTCHLQ EAACRGRVRL EPAPPSRCAL EQPTPASALY SYDYDLGALD 1851 1900 ENSBTAP00000044507/1-1792 TGHLAAGHEL VDLDKEAEDS QSGFSS---- ---------- ---------- ENSTTRP00000014245/1-1860 AGHVAAGHEV VDLDGEAEDR VPDRLGPPAD GRLRGSSKRW SPAPPAPHLH bmy_02576T0/1-1356 AGHVAAGHEV VDLDGETEDS QSGFSS---- ---------- ---------- BACU016700/1-1779 AGHVAAGHE- -DLDGETEDR MTAWAAEPLD PNPKLSQNCH SFCTPASPQG 1901 1950 ENSBTAP00000044507/1-1792 ---------- ---------- ---------- --- ENSTTRP00000014245/1-1860 SFIYSPAFQG GEALNTCIPG ---------- --- bmy_02576T0/1-1356 ---------- ---------- ---------- --- BACU016700/1-1779 SLNVWPRQHQ ALQRKSWAPD RCTFNFPLPD LDL