KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:56:09 2014 Check: 00 .. Name: ENSBTAP00000044543/1-272 Len: 328 Check: 3505 Weight: 1.00 Name: ENSTTRP00000000771/1-240 Len: 328 Check: 1175 Weight: 1.00 Name: bmy_16180T0/1-328 Len: 328 Check: 1734 Weight: 1.00 Name: BACU010561/1-123 Len: 328 Check: 8701 Weight: 1.00 // 1 50 ENSBTAP00000044543/1-272 --------CR PLPLSGAGVQ PQRSSRSPRP AYPA-----L PRGSANPGPA ENSTTRP00000000771/1-240 --------CR PPATSGARVQ RPRSSCSPAP ASPA------ -----GPGPP bmy_16180T0/1-328 MPSPGQRGCR PPATSGARVQ RPRSSCSPAP ASPAPASPAL PRRLAGPGPP BACU010561/1-123 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000044543/1-272 RAPGRLASSF SVEAILARPD PRAPTTSPLS VSAGAHGDLW NVPSRPPAQA ENSTTRP00000000771/1-240 RATGRLESSF SVEAILARPD RRAPAISSLS VSAGAAGGLW TAPARPPAPA bmy_16180T0/1-328 RATGRLESSF SVEAILARPD HRAPAVSPLS VSAGAAGGLW TASSRPPAPV BACU010561/1-123 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000044543/1-272 LPGACPPTWL PPCLSAGLHQ PRPQPPALRP LASHFCGLQG LSVTAYG--- ENSTTRP00000000771/1-240 LPSAYPATWL PAYLNAGLD- -----PVLRL RTAHFCGLQG LGVT------ bmy_16180T0/1-328 LPGACPARWL PAYLSAGLDQ PCPQLPVLRL RAAHFCGLQG LGVPGTRWRT BACU010561/1-123 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000044543/1-272 ---------- ---------- ---------- ---------- RGLRLTFPPA ENSTTRP00000000771/1-240 ---------- ---------- ---------- ---------- ---------- bmy_16180T0/1-328 AATVGTGINI YLHEFLPFLA IWFMYPRGSH EGKQKRNEKL GGYWLTSPPA BACU010561/1-123 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000044543/1-272 NCSSGLELVH CLGLWDPRDW AQAQDLQDTE RSPKRIRTMF NLEQLEELEK ENSTTRP00000000771/1-240 ----GLELAH CLGLWGPRNW AQAQDLQDTE RSQKRVRTMF NLEQLEE--- bmy_16180T0/1-328 NCSSGLELAH CLGLWGPRDW AQAQDLQDTE RSQKRVRTMF NLEQLEELEK BACU010561/1-123 -----LELAH CLGLWGPRDW AQTQDLQDTE RSQKRVRTMF NLEQLEELEK 251 300 ENSBTAP00000044543/1-272 VFAKQHNIVG KKRAQLAAQL NLTENQVRVW FQNRRVKYQK QQRLKLPAAS ENSTTRP00000000771/1-240 VFAKQHNLVG KKRAQLAAQL NLTENQVRVW FQNRRVKYQK QQRLRLPAAS bmy_16180T0/1-328 VFAKQHNLVG KKRAQLAAQL NLTENQVRVW FQNRRVKYQK QQRLRLPAAS BACU010561/1-123 VFAKQHNLVG KKRAQLAAQL NLTENQVRVW FQNRRVKYQK QQRLRLPAAS 301 350 ENSBTAP00000044543/1-272 AMAASPDEPS SSSDTSIQRE DAESGMDS ENSTTRP00000000771/1-240 AMAASPDEPS SSSNTTIQRE DAESGVDS bmy_16180T0/1-328 AMAASPDEPS SSSNTTIQRE DAESGVDS BACU010561/1-123 AMAASPDEPS SSSNTTIQRE DAESGVDS