KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:12 2014 Check: 00 .. Name: ENSBTAP00000044573/1-263 Len: 336 Check: 569 Weight: 1.00 Name: BACU009418/1-306 Len: 336 Check: 7261 Weight: 1.00 Name: bmy_09724T0/1-257 Len: 336 Check: 7247 Weight: 1.00 Name: ENSP00000429553/1-135 Len: 336 Check: 6850 Weight: 1.00 Name: ENSTTRP00000003342/1-116 Len: 336 Check: 3567 Weight: 1.00 // 1 50 ENSBTAP00000044573/1-263 MESNLQGPFL LNNTPLAQFS EMKAPVCQYS MQNSFYKLSP PGLGPQLPAG BACU009418/1-306 ---------- ---------- -MKAPVCQYS VQNAFYKLSP QGLGPQPPAG bmy_09724T0/1-257 MESNLQGPFL LNNAPLAQFS EMKAPVCQYS VQNAFYKLSP QGLGPQPPAG ENSP00000429553/1-135 ---------- ---------- ---------- -----MQQGQ LAPGSRLCSG ENSTTRP00000003342/1-116 ---------- ---------- ---------- ------KQGQ PGP------- 51 100 ENSBTAP00000044573/1-263 TPHGIT--DI LSRPVAAPNS SILPGYPHVA GFGGLGSQGV YYGPQVGSFS BACU009418/1-306 TPHGIS--DI LSRPVAAPNS CLLSGYPHVA GFGGLGSQGV YYGPQVGNFS bmy_09724T0/1-257 TPHGIS--DI LSRPVAAPNS CLLSGYPHMA GFGGLGSQGV YYGPQVGNFS ENSP00000429553/1-135 PW-GLP--EL --QPAAPSSS A--------- ---------- ---------- ENSTTRP00000003342/1-116 -WPGLSGRHL QPQPAAPAN- ---------- ---------- ---------- 101 150 ENSBTAP00000044573/1-263 KAGSEYPTRT RNCWADAGQD WRGGRQCGST PDALGNSIHK KKHTRPTFTG BACU009418/1-306 KAGNEYPTRT RNCWADTGQD WRGGRPCGNT PDPLSDSIHK KKHTRPTFTG bmy_09724T0/1-257 KAGNEYPTRT RNCWADTGQD WRGGRPCSNT PDPLSDSIHK KKHTRPTFTG ENSP00000429553/1-135 ---AQLPWGE S--WGEEA-- --------DT PACLSASG-- ---------- ENSTTRP00000003342/1-116 -----LPRRE R--RVEEG-- ---------- -LYHSASL-- ---------- 151 200 ENSBTAP00000044573/1-263 HQIFALEKTF EQTKYLAGPE RARLAYSLGM TESQVKVWFQ NRRTKWRKKS BACU009418/1-306 HQIFALEKTF EQTKYLAGPE RARLAYSLGM TESQVKVWFQ NRRTKWRKKR bmy_09724T0/1-257 HQIFALEKTF EQTKYLAGPE RARLAYSLGM TESQVKVWFQ NRRTKWRKKS ENSP00000429553/1-135 ---------- ---------- ---------- ------VWFQ NRRTKWRKKS ENSTTRP00000003342/1-116 ---------- ---------- ---------- ------VWFQ NRRTKWRKKS 201 250 ENSBTAP00000044573/1-263 ALEPSSSTPR APGSAG--AG GERAASETED DEYNKPLDPD SDDEKIRLLL BACU009418/1-306 ALEPSSSTPR A-------SG GDRAASENDD DEYNKPLDPD SDDEKIRLXX bmy_09724T0/1-257 ALEPSSSTPR A-------SG GDRAASENDD DEYNKPLDPD SDDEKIRLLL ENSP00000429553/1-135 ALEPSSSTPR APGGAGAGAG GDRAPSENED DEYNKPLDPD SDDEKIRLLL ENSTTRP00000003342/1-116 ALEPSSSTPR A-------SG GDRAASENDD DEYNKPLDPD SDDEKIRLLL 251 300 ENSBTAP00000044573/1-263 RKHRAAFSVL GL-------- ---------- ---------- ---------- BACU009418/1-306 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09724T0/1-257 RKHRAAFSVL SL-------- ---------- ---------- ---------- ENSP00000429553/1-135 RKHRAAFSVL SL-------- ---------- ---------- ---------- ENSTTRP00000003342/1-116 RKHRAAFSVL SL-------- ---------- ---------- ---------- 301 350 ENSBTAP00000044573/1-263 ---------- ---------- -------GAH GV---- BACU009418/1-306 XXXXXXXXXX XXXXXGDEEE WGEQEMEGKG GRRPVS bmy_09724T0/1-257 ---------- ---------- -------GAH G----- ENSP00000429553/1-135 ---------- ---------- -------GAH SV---- ENSTTRP00000003342/1-116 ---------- ---------- -------GAH S-----