KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:13 2014 Check: 00 .. Name: bmy_20169T0/1-788 Len: 1141 Check: 2090 Weight: 1.00 Name: BACU016752/1-974 Len: 1141 Check: 1148 Weight: 1.00 Name: ENSP00000230640/1-1042 Len: 1141 Check: 7210 Weight: 1.00 Name: ENSBTAP00000044575/1-937 Len: 1141 Check: 6863 Weight: 1.00 Name: ENSTTRP00000008227/1-1038 Len: 1141 Check: 8029 Weight: 1.00 // 1 50 bmy_20169T0/1-788 MADAFGDELF SVFEDDSTTA PGAKKDKEKE KGKWKGPPGS AEKAGRRFDG BACU016752/1-974 MADAFGDELF SVFEDDSTTA PGAKKDKEKE KGKWKGPPGS AEKAGRRFDG ENSP00000230640/1-1042 MADAFGDELF SVFEGDSTTA AGTKKDKEKD KGKWKGPPGS ADKAGKRFDG ENSBTAP00000044575/1-937 MADAFGDELF SVFEDDSTTA PGAKKDKE-- KGKWKGPPGS AEKAGRCFDG ENSTTRP00000008227/1-1038 MADAFGDELF SVFEDDSTTA PGAKKDKE-- KGKWKGPPGS AEKAGKHFDG 51 100 bmy_20169T0/1-788 KLQSESTNIG KNKRDADFEG TDEPIFGKKP RVEESITEDL SLSDLMPGVK BACU016752/1-974 KLQSESTNIG KNKRDADFEG TDEPIFGKKP RVEESITEDL SLSDLMPRVK ENSP00000230640/1-1042 KLQSESTNNG KNKRDVDFEG TDEPIFGKKP RIEESITEDL SLADLMPRVK ENSBTAP00000044575/1-937 KLQSESTNVG KNKRDADFEG ADEPIFGKKP RVEESITEDL SLADLMPRVK ENSTTRP00000008227/1-1038 KLQSESTNIG KNKRDADFEG TDEPIFGKKP RVEESITEDL SLSDLMPRVK 101 150 bmy_20169T0/1-788 VQSVETVEGC THEVALPADE DYLPLKPRVG KAAKEYPFIL DAFQREAIQC BACU016752/1-974 VQSVETVEGC THEVS--TNS VWLHFLQM-- KIIYHLNLAL EKLQR----- ENSP00000230640/1-1042 VQSVETVEGC THEVALPAEE DYLPLKPRVG KAAKEYPFIL DAFQREAIQC ENSBTAP00000044575/1-937 VQSVETVEGC THEVALPADE DYLPLKPRVG KAAKEYPFIL DAFQREAIQC ENSTTRP00000008227/1-1038 VQSVETVEGC THEVALPADE DYLPLKPRVG KAAKEYPFIL DAFQREAIQC 151 200 bmy_20169T0/1-788 VDNNQSVLVS AHTS-GKTVC AEYAIALALR EKQRVIFTSP IKALSNQKYR BACU016752/1-974 ---------- ---------- --YAIALALR EKQRVIFTSP IKALSNQKYR ENSP00000230640/1-1042 VDNNQSVLVS AHTSAGKTVC AEYAIALALR EKQRVIFTSP IKALSNQKYR ENSBTAP00000044575/1-937 VDNNQSVLVS AHTSAGKTVC AEYAIALALR EKQRVIFTSP IKALSNQKYR ENSTTRP00000008227/1-1038 VDNNQSVLVS AHTSAGKTVC AEYAIALALR EKQRVIFTSP IKALSNQKYR 201 250 bmy_20169T0/1-788 EMYEEFQXVG LMTGDVTINP TASCLVMTTE ILRSMLYRGS EVMREVAWVI BACU016752/1-974 EMYEEFQDVG LMTGDVTINP TASCLVMTTE ILRSMLYRGS EVMREVAWVI ENSP00000230640/1-1042 EMYEEFQDVG LMTGDVTINP TASCLVMTTE ILRSMLYRGS EVMREVAWVI ENSBTAP00000044575/1-937 EMYEEFQDVG LMTGDVTINP TASCLVMTTE ILRSMLYRGS EVMREVAWVI ENSTTRP00000008227/1-1038 EMYEEFQDVG LMTGDVTINP TASCLVMTTE ILRSMLYRGS EVMREVAWVI 251 300 bmy_20169T0/1-788 FDEIHYMRDS ERGVVWEETX ILLPDNVHYV FLSATIPNAR QFAEWICHLH BACU016752/1-974 FDEIHYMRDS ERGVVWEETI ILLPDNVHYV FLSATIPNAR QFAEWICHLH ENSP00000230640/1-1042 FDEIHYMRDS ERGVVWEETI ILLPDNVHYV FLSATIPNAR QFAEWICHLH ENSBTAP00000044575/1-937 FDEIHYMRDS ERGVVWEETI ILLPDNVHYV FLSATIPNAR QFAEWICHLH ENSTTRP00000008227/1-1038 FDEIHYMRDS ERGVVWEETI ILLPDNVHYV FLSATIPNAR QFAEWICHLH 301 350 bmy_20169T0/1-788 KQPCHVIYTD YRPTPLQHYI FPAGGDGLHL VVDENGDFRE DNFNTAMPVL BACU016752/1-974 KQPCHVIYTD YRPTPLQHYI FPAGGDGLHL VVDENGDFRE DNFNTAMQVL ENSP00000230640/1-1042 KQPCHVIYTD YRPTPLQHYI FPAGGDGLHL VVDENGDFRE DNFNTAMQVL ENSBTAP00000044575/1-937 KQPCHVIYTD YRPTPLQHYI FPAGGDGLHL VVDENGDFRE DNFNTAMQVL ENSTTRP00000008227/1-1038 KQPCHVIYTD YRPTPLQHYI FPAGGDGLHL VVDENGDFRE DNFNTAMQVL 351 400 bmy_20169T0/1-788 RDAGDLAKGD QKGRKGGTEG PSNVFKIVKM IMERNFQPVI IFSFSKKDCE BACU016752/1-974 RDAGDLAKGD QKGRKGGTKG PSNVFKIVKM IMERNFQPVI IFSFSKKDCE ENSP00000230640/1-1042 RDAGDLAKGD QKGRKGGTKG PSNVFKIVKM IMERNFQPVI IFSFSKKDCE ENSBTAP00000044575/1-937 RDAGDLAKGD QKGRKGGTKG PSNVFKIVKM IMERNFQPVI IFSFSKKDCE ENSTTRP00000008227/1-1038 RDAGDLAKGD QKGRKGGTKG PSNVFKIVKM IMERNFQPVI IFSFSKKDCE 401 450 bmy_20169T0/1-788 AYALQMTKLD FNTDEEKKMV EE-------- ---------- ---------- BACU016752/1-974 AYALQMTKLD FNTDEEKKMV EEVFSNAIDC LSDEDKKLPQ ---------- ENSP00000230640/1-1042 AYALQMTKLD FNTDEEKKMV EEVFSNAIDC LSDEDKKLPQ VEHVLPLLKR ENSBTAP00000044575/1-937 AYALQMTKLD FNTDEEKKMV EEVFSNAIDC LSDEDKKLPQ VENVLPLLKR ENSTTRP00000008227/1-1038 AYALQMTKLD FNTDEEKKMV EEVFSNAIDC LSDEDKKLPQ VEHVLPLLKR 451 500 bmy_20169T0/1-788 ---------- ---------- ---------- ---------- ---------- BACU016752/1-974 ---------- ---------- -------ALF ATETFAMGIN MPARTVLFTS ENSP00000230640/1-1042 GIGIHHGGLL PILKETIEIL FSEGLIKALF ATETFAMGIN MPARTVLFTN ENSBTAP00000044575/1-937 GIGIHHGGLL PILKETIEIL FSEGLIKALF ATETFAMGIN MPARTVLFTN ENSTTRP00000008227/1-1038 GIGIHHGGLL PILKETIEIL FSEGLIKALF ATETFAMGIN MPART-LFTN 501 550 bmy_20169T0/1-788 ---------- ---------- ---------- ---------- ---------- BACU016752/1-974 ARKFDGKDFR WISSGEYIQM SGRAGRRGMD DRGIVILMVD EKMSPTIGKQ ENSP00000230640/1-1042 ARKFDGKDFR WISSGEYIQM SGRAGRRGMD DRGIVILMVD EKMSPTIGKQ ENSBTAP00000044575/1-937 ARKFDGKDFR WISSGEYIQM SGRAGRRGMD DRGIVILMVD EKMSPTIGKQ ENSTTRP00000008227/1-1038 ARKFDGK-FR WISSGEYIQM SGRAGRRGMD DRGIVILMVD EKMSPTIGKQ 551 600 bmy_20169T0/1-788 ---------- ---------- ---------- ---------- -FQHYRAIPG BACU016752/1-974 LLKGSADPLN SAFHLTYNMV LNLLRVEEIN PEYMLEKSFY QFQHYRAIPG ENSP00000230640/1-1042 LLKGSADPLN SAFHLTYNMV LNLLRVEEIN PEYMLEKSFY QFQHYRAIPG ENSBTAP00000044575/1-937 LLKGSADPLN SAFHLTYNMV LNLLRVEEIN PEYMLEKSFY QFQHYRAIPG ENSTTRP00000008227/1-1038 LLKGSADPLN SAFHLTYNMV LNLLRVEEIN PEYMLEKSFY QFQHYRAIPG 601 650 bmy_20169T0/1-788 VVEKVKNSEE QYNKIVIPNE ESVVIYYKIR QQLAK----- ---------- BACU016752/1-974 VVEKVKNSEE QYNKIVIPNE ESVVIYYKIR QQLAKLGKEI EEYIHKPKYC ENSP00000230640/1-1042 VVEKVKNSEE QYNKIVIPNE ESVVIYYKIR QQLAKLGKEI EEYIHKPKYC ENSBTAP00000044575/1-937 VVEKVKNSEE QYNKIVIPNE ESVVIYYKIR QQLAKLGKEI EEYIHKPKYC ENSTTRP00000008227/1-1038 VVEKVKNSEE QYNKIVIPNE ESVVIYYKIR QQLAKLGKEI EEYIHKPKYC 651 700 bmy_20169T0/1-788 ---------- ---------- ---------- ---------- ---------- BACU016752/1-974 LPFLQPGRLV KVKNEGDDFG WGVVVNFSKK SNVKPNSGEL DPLYVVEVLL ENSP00000230640/1-1042 LPFLQPGRLV KVKNEGDDFG WGVVVNFSKK SNVKPNSGEL DPLYVVEVLL ENSBTAP00000044575/1-937 LPFLQPGRLV KVKNEGDDFG WGVVVNFSKK SNVKPNSGEL DPLYVVEVLL ENSTTRP00000008227/1-1038 LPFLQPGRLV KVKNEGDDFG WGVVVNFSKK SNVKPNSGEL DPLYVVEVLL 701 750 bmy_20169T0/1-788 ---------- ---------- ---------- ---------- ---------- BACU016752/1-974 RCSKESLKNS ATEAAKPAKS DEKGEMQVVP VLVHLLSAIS SVRLYIPKDL ENSP00000230640/1-1042 RCSKESLKNS ATEAAKPAKP DEKGEMQVVP VLVHLLSAIS SVRLYIPKDL ENSBTAP00000044575/1-937 RCSKESLKNS ATEAAKPAKP DEKGEMQVVP VLVHLLSAIS SVRLYIPKDL ENSTTRP00000008227/1-1038 RCSKESLKNS ATEAAKPAKS DEKGEMQVVP VLVHLLSAIS SVRLYIPKDL 751 800 bmy_20169T0/1-788 ---------- ---------- ------LDPI DDMGIXDQGL KKVIQK---- BACU016752/1-974 RPLDNRQSVL KSIQEVQKRF PDGVPLLDPI DDMGIQDQGL KKVIQKVEAF ENSP00000230640/1-1042 RPVDNRQSVL KSIQEVQKRF PDGIPLLDPI DDMGIQDQGL KKVIQKVEAF ENSBTAP00000044575/1-937 RPLDNRQSVL KSIQEVQKRF PDGVPLLDPI DDMGIQDQGL KKVIQKVEAF ENSTTRP00000008227/1-1038 RPLDNRQSVL KSIQEVQKRF PDGVPLLDPI DDMGIQDQGL KKVIQKVEAF 801 850 bmy_20169T0/1-788 ---------- ---------- -------IAI DIKSAKRELK KARTLLQMDE BACU016752/1-974 EHRMYSHPLH NDPNLETVYT LCEKKAQIAI DIKSAKRELK KARTVLQMDE ENSP00000230640/1-1042 EHRMYSHPLH NDPNLETVYT LCEKKAQIAI DIKSAKRELK KARTVLQMDE ENSBTAP00000044575/1-937 EHRMYSHPLH NDPNLETVYT LCEKKAQIAI DIKSAKRELK KARTVLQMDE ENSTTRP00000008227/1-1038 EHRMYSHPLH NDPNLETVYT LCEKKAQIAI DIKSAKRELK KARTVLQMDE 851 900 bmy_20169T0/1-788 LKCRKRCCAR FSARSSLYIH SKKHLQDVAA PKSR--CPVS ---SCHRLFA BACU016752/1-974 LKCRKRVLRR LGFATS---- -----SDVIE MKGRVACEIS ---SADELLL ENSP00000230640/1-1042 LKCRKRVLRR LGFATS---- -----SDVIE MKGRVACEIS ---SADELLL ENSBTAP00000044575/1-937 LKCRKRVLRR LGFATS---- -----SDVIE MKGRVACEIS RWYSADELLL ENSTTRP00000008227/1-1038 LKCRKRVLRR LGFATS---- -----SDVIE MKGRVACEIS ---SADELLL 901 950 bmy_20169T0/1-788 SKHSVKAHMI RQHHRHPDLF PPLGAPSALA PSSDLSSPSQ SEFSSVDLAV BACU016752/1-974 TEMMFNG--- --------LF NDLSAEQATA LLS------- --------CF ENSP00000230640/1-1042 TEMMFNG--- --------LF NDLSAEQATA LLS------- --------CF ENSBTAP00000044575/1-937 TEMMFNG--- --------LF NDLSAEQATA LLS------- --------CF ENSTTRP00000008227/1-1038 TEMMFNG--- --------LF NDLSAEQATA LLS------- --------CF 951 1000 bmy_20169T0/1-788 LFSDTPGDSG GAPRTSDGAL RTGILTVDVT SVSASLAGGL PASQAASGPM BACU016752/1-974 VFQENSS--- ---------- -------EMP KLTEQLAGPL RQMQECAKRI ENSP00000230640/1-1042 VFQENSS--- ---------- -------EMP KLTEQLAGPL RQMQECAKRI ENSBTAP00000044575/1-937 VFQENSS--- ---------- -------EMP KLTEQLAGPL RQMQ------ ENSTTRP00000008227/1-1038 VFQENSS--- ---------- -------EMP KLTEQLAGPL RQMQECAKRI 1001 1050 bmy_20169T0/1-788 GPLVLVAHSD VPP----GPD RPLVLGTAAT VLQQGSLA-- ADDMQAVDAG BACU016752/1-974 AKVSAEAKLE IDEETYLSSF KPHLMDVVYT WATGATFAHI CKMTDVFEGS ENSP00000230640/1-1042 AKVSAEAKLE IDEETYLSSF KPHLMDVVYT WATGATFAHI CKMTDVFEGS ENSBTAP00000044575/1-937 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008227/1-1038 AKVSAEAKLE IDEETYLSSF KPHLMDVVYT WATGATFAHI CKMTDVFEGS 1051 1100 bmy_20169T0/1-788 ALGCLVALPV KSLSRDPQAF TSASGPQGDS SAPELLVPIK VEPDSAPGPD BACU016752/1-974 IIRCM----- RRLEELLRQM CQAAKAIGNT ---------E LENKFSEGIT ENSP00000230640/1-1042 IIRCM----- RRLEELLRQM CQAAKAIGNT ---------E LENKFAEGIT ENSBTAP00000044575/1-937 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008227/1-1038 IIRCM----- RRLEELLRQM CQAAKAIGNT ---------E LENKFSEGIT 1101 1150 bmy_20169T0/1-788 AVSQQAWSGG APRPVESSPA EELGPRKDAG LGAGTGGFYL V BACU016752/1-974 KI-------- ---------- -----KRDIV FAA---SLYL - ENSP00000230640/1-1042 KI-------- ---------- -----KRDIV FAA---SLYL - ENSBTAP00000044575/1-937 ---------- ---------- ---------- ---------- - ENSTTRP00000008227/1-1038 KI-------- ---------- -----KRDIV FAA---SLYL -