KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:16 2014 Check: 00 .. Name: bmy_07150T0/1-336 Len: 359 Check: 6025 Weight: 1.00 Name: ENSP00000423881/1-248 Len: 359 Check: 4892 Weight: 1.00 Name: ENSBTAP00000044637/1-248 Len: 359 Check: 5495 Weight: 1.00 Name: BACU012535/1-280 Len: 359 Check: 6475 Weight: 1.00 Name: ENSTTRP00000005424/1-246 Len: 359 Check: 2026 Weight: 1.00 // 1 50 bmy_07150T0/1-336 MSLHGAARSG NAAKPHFPGP RRPVARPVDV GPAGAGQKPH VGWRLVCRSR ENSP00000423881/1-248 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044637/1-248 ---------- ---------- ---------- ---------- ---------- BACU012535/1-280 ---------- ---------- ---------- ---------M LAQRALGKSP ENSTTRP00000005424/1-246 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_07150T0/1-336 RERGAVGTGR WSREPRRSKR EAMQKSECHR SVQLRNRVTD NCDQRTSSSA ENSP00000423881/1-248 ---------- ---------- --MQKSEGSG GTQLKNRATG NYDQRTSSST ENSBTAP00000044637/1-248 ---------- ---------- --MQKSEFHR GVQMRSRLTD NCDQRTSSSA BACU012535/1-280 TWGGGWCADR GGREA-RSKR EAMQKSECHR SVQLRNRVTD NCDQRTSSSV ENSTTRP00000005424/1-246 ---------- ---------- --MQKSECHR GIQLRNRVTD NCDQRTSSSA 101 150 bmy_07150T0/1-336 RIKHRTAVQQ RKSSSSTSSP ESARKLHPRP SDKLNPKTIN PVGTKEIPDS ENSP00000423881/1-248 QLKHRNAVQG SKSSLSTSSP ESARKLHPRP SDKLNPKTIN P--------- ENSBTAP00000044637/1-248 QVKHGTTVQQ SKSSSSTSSP ESARKLHPRP SDKLNPKTIN P--------- BACU012535/1-280 QIKHRTAVQQ RKSSSSTSSP ESARKLHPRP SDKLNPKTIN P--------- ENSTTRP00000005424/1-246 QIKHRTTVQQ RKSSSSTSSP ESAR--HPRP SDKLNPKTIN P--------- 151 200 bmy_07150T0/1-336 VDFQTQNQIG EITGSLTIQD XPYLSGGEFG EQSRAPSAFA AIYSKGGVPC ENSP00000423881/1-248 ---------- ---------- --------FG EQSRVPSAFA AIYSKGGIPC ENSBTAP00000044637/1-248 ---------- ---------- --------FG EQSRAPSAFA AIYSKGGIPC BACU012535/1-280 ---------- ---------- --------FG EQSRAPSAFA AIYSKGGVPC ENSTTRP00000005424/1-246 ---------- ---------- --------FG EQSRAPSAFA AIYSKGGVPC 201 250 bmy_07150T0/1-336 ---------R LQWECPPEKL PFDPLLITLA EGLRETKHPY TFVSKEGFRE ENSP00000423881/1-248 RLVHGSVKHR LQWECPPESL SFDPLLITLA EGLRETKHPY TFVSKEGFRE ENSBTAP00000044637/1-248 RLVHGSVKHR LQWECPPEKL PFDPLLITLA EGLRETKHPY TFVSKEGFRE BACU012535/1-280 RLVHGSVNHR LQWECPPEKL PFDPLLITLA EGLRETKHPY PFVSKEGFRE ENSTTRP00000005424/1-246 RLVHGSVKHR LQWECPPEKL PFDPLLITLA EGLRETKHPY TFVSKEGFRE 251 300 bmy_07150T0/1-336 LLLVTGALEK AVPLLPRLIP VLKAALVHLD DEVFERGLNA LVQLSVVVGP ENSP00000423881/1-248 LLLVKGAPEK AIPLLPRLIP VLKAALVHSD DEVFERGLNA LVQLSVVVGP ENSBTAP00000044637/1-248 LLLVTGAPEK AVPLLPRLIP VLKAALVHVD DEVFERGLNA LVQLSVVVGP BACU012535/1-280 LLLVTGALEK AVPLLPRLIP VLKAALVHLD DEVFERGLNA LVQLSVVVGP ENSTTRP00000005424/1-246 LLSVTGALEK AVPLLPRLIP VLKAALVHLD DEVFERGLNA LVQLSVVVGP 301 350 bmy_07150T0/1-336 SLNDHLKHLL TSIYKREALP SSNLK----- -FQPIVPYTA EERALVTGVK ENSP00000423881/1-248 SLNDHLKHLL TSLSKR--LM DKKFKEPITS ALQKLEQHGG SGSLSIIKSK ENSBTAP00000044637/1-248 ALNDHLKHLL TSLSKR--LR DKKFKEPITT ALQKLEQHGG SGSLIIIKSK BACU012535/1-280 SLNDHLKHLL TSLSRR--LR DKKFKEPITT ALQKLEQNGG SGSLTIIKSK ENSTTRP00000005424/1-246 SLNDHLKHLL TSLSRR--LR DKKFKEPITT ALQKLEQHGG SGSLIIIKSK 351 400 bmy_07150T0/1-336 R-------- ENSP00000423881/1-248 IPTYCSICC ENSBTAP00000044637/1-248 IPTYCSICC BACU012535/1-280 IPTYCSIYC ENSTTRP00000005424/1-246 IPTYCSIYC