KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:16 2014 Check: 00 .. Name: ENSTTRP00000002937/1-367 Len: 395 Check: 5189 Weight: 1.00 Name: bmy_02586T0/1-283 Len: 395 Check: 51 Weight: 1.00 Name: ENSP00000352408/1-329 Len: 395 Check: 6308 Weight: 1.00 Name: BACU016694/1-355 Len: 395 Check: 9664 Weight: 1.00 Name: ENSBTAP00000044652/1-332 Len: 395 Check: 7865 Weight: 1.00 // 1 50 ENSTTRP00000002937/1-367 MEVAEPSSPA --EEEEEEEE EQSAEPRPRT RSNPEGAEDR ALGAQASVGS bmy_02586T0/1-283 MEVAEPSSPT --KEEEEEEA EQSAEPRPRT RSNPEGAEDR ALGAQASVGS ENSP00000352408/1-329 MEVAEPSSPT ---EEEEEEE EHSAEPRPRT RSNPEGAEDR AVGAQASVGS BACU016694/1-355 MEVAEPSSPT --EEEEEEEE EQSAEPRPRT RSNPEGAEDR ALGAQASVGS ENSBTAP00000044652/1-332 MEVAEPSCPT EEEEEEEEEE EQSAEPRPRT RSNPEGAEDR ALGAQTSVGS 51 100 ENSTTRP00000002937/1-367 RSEGEGEAAS ADDGTANPPG AGPKPWQVPP PAPEVQVRTP RVNCPEKVII bmy_02586T0/1-283 RSEGEGEAAS ADDGTANPPG AGPKPWQVPP PAPEVQVRTP RVNCPEKVII ENSP00000352408/1-329 RSEGEGEAAS ADDGSLNTSG AGPKSWQVPP PAPEVQIRTP RVNCPEKVII BACU016694/1-355 RSEGEGEAAS ADDGTANPPG AGPKPWQVPP PAPEVQVRTP RVNCPEKVII ENSBTAP00000044652/1-332 RSEGEGEAAS ADDGTANPPG AGPKPWQVPP PAPEVQVRTP RVNCPEKVII 101 150 ENSTTRP00000002937/1-367 CLDLSEEMSL PKLESLNSSK TNALNVSQKM IEMFVRTKHK IDKSHEFALV bmy_02586T0/1-283 CLDLSEEMSL PKLESLNRLT XGAWRY---- ---------- ---------- ENSP00000352408/1-329 CLDLSEEMSL PKLESFNGSK TNALNVSQKM IEMFVRTKHK IDKSHEFALV BACU016694/1-355 CLDLSEEMSL PKLESLNSSK TNALNVSQKM IEMFVRTKHK IDKSHEFALV ENSBTAP00000044652/1-332 CLDLSEEMAL PKLESFNGSK TNALNVSQKM IEMFVRTKHK IDKSHEFALV 151 200 ENSTTRP00000002937/1-367 VVNDDTAW-L SGLTSDPREL CSCLYDLETA SCSTFR---- ------VSG- bmy_02586T0/1-283 -------WRV AMITAFPPD- ---------- ---------- ------LEG- ENSP00000352408/1-329 VVNDDTAW-L SGLTSDPREL CSCLYDLETA SCSTFN---- ------LEG- BACU016694/1-355 VVNDDTAW-L SGLTSDPREL CSCLYDLETA SCSTFMPCTQ CENHLWLSGK ENSBTAP00000044652/1-332 VVNDDTAW-L SGLTSDPREL CSCLYDLETA SCSTFN---- ------LEG- 201 250 ENSTTRP00000002937/1-367 --------AS HT------RQ QKTELPVTEN VQMIPPPYVV RTILVYSRPP bmy_02586T0/1-283 --------LF SL------IQ QKTELPVTEN VQTIPPPYVV RTILVYSRPP ENSP00000352408/1-329 --------LF SL------IQ QKTELPVTEN VQTIPPPYVV RTILVYSRPP BACU016694/1-355 LGTDFAYKMW SLPQSLLACQ QKTELPVTEN VQTIPPPYVV RTILVYSRPP ENSBTAP00000044652/1-332 --------LF SL------IQ QKTELPVTEN VQTIPPPYVV RTILVYSRPP 251 300 ENSTTRP00000002937/1-367 CQPQFSLTEP MKKMFQCPYF FFDVVYIHNG ADEKEEEMSW KWVXXXXXXX bmy_02586T0/1-283 CQPQFSLTEP MKKMFQCPYF FFDVVYIHNG TDEKEEEMSW K--------- ENSP00000352408/1-329 CQPQFSLTEP MKKMFQCPYF FFDVVYIHNG TEEKEEEMSW K--------- BACU016694/1-355 CQPQFSLTEP MKKMFQCPYF FFDVVYIHNG ADEKEEEMSW K--------- ENSBTAP00000044652/1-332 CQPQFSLTEP MKKMFQCPYF FFDVVYIHNG ADEKEEEMSW K--------- 301 350 ENSTTRP00000002937/1-367 XXXXXXXXIS TRWRWLGQPL SCTTVWPSFW LTHCSGPAKA MPPTACWRRT bmy_02586T0/1-283 ---------- DMFAFMGSLD TKGTSYK--Y EVALAGPALE L--HNCMAKL ENSP00000352408/1-329 ---------- DMFAFMGSLD TKGTSYK--Y EVALAGPALE L--HNCMAKL BACU016694/1-355 ---------- DMFAFMGSLD TKGTSYK--Y EVALAGPALE L--HNCMAKL ENSBTAP00000044652/1-332 ---------- DMFAFMGSLD TKGTSYK--Y EVALAGPALE L--HNCMAKL 351 400 ENSTTRP00000002937/1-367 MKLPRLRPLS EPSLYITFYE ETFGRECWFS HWALWDPEGG LGGIQ bmy_02586T0/1-283 LAHPLQRPCQ SHASYSLLEE D--------- -----DEASE VEATV ENSP00000352408/1-329 LAHPLQRPCQ SHASYSLLEE E--------- -----DEAIE VEATV BACU016694/1-355 LAHPLQRPCQ SHASYSLLEE D--------- -----DEATE VEATV ENSBTAP00000044652/1-332 LAHPLQRPCQ SHASYSLLEE D--------- -----DEATE VEATV