KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:17 2014 Check: 00 .. Name: ENSBTAP00000044656/1-1134 Len: 1182 Check: 7168 Weight: 1.00 Name: ENSP00000293373/1-1127 Len: 1182 Check: 9202 Weight: 1.00 Name: ENSTTRP00000004210/1-1128 Len: 1182 Check: 6073 Weight: 1.00 Name: bmy_04717T0/1-1061 Len: 1182 Check: 4011 Weight: 1.00 Name: BACU008104/1-1093 Len: 1182 Check: 4097 Weight: 1.00 // 1 50 ENSBTAP00000044656/1-1134 ---------- ---------- ---------- ---------- ---MSLTSAY ENSP00000293373/1-1127 ---------- ---------- ---------- ---------- ---MSLTSAY ENSTTRP00000004210/1-1128 ---------- ---------- ---------- ---------- ---MSLTSAY bmy_04717T0/1-1061 RQQEDQRTNQ AGCLRPKGVT TQAESVWGDQ ALLSGCSSLS VAIMSLTSAY BACU008104/1-1093 ---------- ---------- ---------- ---------- ---MSLTSAY 51 100 ENSBTAP00000044656/1-1134 QHKLAEKLTI LNDRGQGVLI RMYNIKKTCS DPKSKPPFLL EKSMESSLKY ENSP00000293373/1-1127 QHKLAEKLTI LNDRGQGVLI RMYNIKKTCS DPKSKPPFLL EKSMEPSLKY ENSTTRP00000004210/1-1128 EHKLAEKLTI LNDRGQGVLI RMYNIKKTCS DPKSKPPFLL EKSMESSLKY bmy_04717T0/1-1061 QHKLAEKLTI LNDRGQGVLI RMYNIKKTCS DPKSKPPFLL EKSMESSLKY BACU008104/1-1093 QHKLAEKLTI LNDRGQGVLI RMYNIKKTCS DPKSKPPFLL EKSMESSLKY 101 150 ENSBTAP00000044656/1-1134 INKKFPNIDV RNSTQHLGPV HREKSEIIRY LTNYYQSFVD VMEFRDHVYE ENSP00000293373/1-1127 INKKFPNIDV RNSTQHLGPV HREKAEIIRF LTNYYQSFVD VMEFRDHVYE ENSTTRP00000004210/1-1128 INKKFPNIDV RNSTQHLGPV HREKSEIIRF LTNYYQSFVD VMEFRDHVYE bmy_04717T0/1-1061 INKKFPNIDV RNSTQHLGPV HREKSEIIRF LTNYYQSFVD VMEFRDHVYE BACU008104/1-1093 INKKFPNIDV RNSTQHLGPV HREKSEIIRF LTNYYQSFVD VMEFRDHVYE 151 200 ENSBTAP00000044656/1-1134 LLNTIDACQC HFDINLNFDF TRSYLDLIVT YTSVILLLSR IEDRRVLIGM ENSP00000293373/1-1127 LLNTIDACQC HFDINLNFDF TRSYLDLIVT YTSVILLLSR IEDRRILIGM ENSTTRP00000004210/1-1128 LLNTXXXXXX XXXXNLNFDF TRSYLDLIVT YTSVILLLSR IEDRRVLIGV bmy_04717T0/1-1061 LLNTIDACQC HFDINLNFDF TRSYLDLIVT YTSVILLLSR IEDRRVLIGV BACU008104/1-1093 LLNTIDACQC HFDITLNFDF TRSYLDLIVT YTSVILLLSR IEDRRVLIGV 201 250 ENSBTAP00000044656/1-1134 FNCAHEMLHG HSDSSFARLG QMVLEYDHPL KKLTEEFGPH TKAVSEALLS ENSP00000293373/1-1127 YNCAHEMLHG HGDPSFARLG QMVLEYDHPL KKLTEEFGPH TKAVSGALLS ENSTTRP00000004210/1-1128 YNCAHEMLHG HGDPSFARLG QMVLEYDHPL KKLTEEFGPH TKAVSGALLS bmy_04717T0/1-1061 FNCAHEMLHG HSDPSFARLG QM-------- ---------- --AVSGALLS BACU008104/1-1093 YNCAHEMLHG H--------- ---------- ---------- ---------- 251 300 ENSBTAP00000044656/1-1134 LHCLFVRRNQ GAEQWRSVQL LSLIGTASAM INPANSDTMA CEYLSVEVME ENSP00000293373/1-1127 LHFLFVRRNQ GAEQWRSAQL LSLISNPPAM INPANSDTMA CEYLSVEVME ENSTTRP00000004210/1-1128 LHFLFVRRNQ GAEQWRSAQL LSLISTPAAM INPANSDTMA CEYLSVEVME bmy_04717T0/1-1061 LHFLFVRRNQ GAEQWRSAQL LSLISTPAAM INPANSDTMA CEYLSVEVME BACU008104/1-1093 -------RNQ GAEQWRSAQL LSLISTPAAM INPANSDTMA CEYLSVEVME 301 350 ENSBTAP00000044656/1-1134 RWIVIGFLLC HGCLNSNADC QKLWKLCLQG SLYITLIRED ALQVHKVTED ENSP00000293373/1-1127 RWIIIGFLLC HGCLNSNSQC QKLWKLCLQG SLYITLIRED VLQVHKVTED ENSTTRP00000004210/1-1128 RWIVIGFLLC HGCLNSNSQC QKLWKLCLQG SLYITLIRED VLQVHKVTED bmy_04717T0/1-1061 RWIVIGFLLC HGCLNSNSQC QKLWKLCLQG SLYITLIRED VLQVHKVTED BACU008104/1-1093 RWIVIGFLLC HGCLNSNSQC QKLWKLCLQG SLYITLIRED VLQVHKVTED 351 400 ENSBTAP00000044656/1-1134 LFSSLKGYGK RVADIKESKE HAIANSGQFH SQRRQFLRIA VKELETVLTD ENSP00000293373/1-1127 LFSSLKGYGK RVADIKESKE HVIANSGQFH CQRRQFLRMA VKELETVLAD ENSTTRP00000004210/1-1128 LFSGLKGYGK RVADVKESKE HAIANSGQFH SQRRQFLRMA VKELETVLTD bmy_04717T0/1-1061 LFSGLKGYGK RVADVKESKE HAIANSGQFH SQRRQFLRMA VKELET---- BACU008104/1-1093 LFSGLKGYGK RVADVKESKE HAIANSGQFH SQRRQFLRMA VKELETVLTD 401 450 ENSBTAP00000044656/1-1134 EPGLLGPK-- ---ALFAFMA LSFIRDEVTW LVRHTENVTK TKTPETTLTR ENSP00000293373/1-1127 EPGLLGPK-- ---ALFAFMA LSFIRDEVTW LVRHTENVTK TKTPEDYADS ENSTTRP00000004210/1-1128 EPGLLGPK-- ---ALFAFMA LSFIRDEVTW LVRHTENVTK TKTPEDYADS bmy_04717T0/1-1061 ---------- ---ALFAFMA LSFIRDEVTW LVRHAENVTK TKTPEDYADS BACU008104/1-1093 EPGLLGPKAR ERNALFAFMA LSFIRDEVTW LVRHAENVTK TKTPEDYADS 451 500 ENSBTAP00000044656/1-1134 YIAELLFLLE EVRALVRRHV KVIQQYHLQY LARFDALVLS DIIQNLSVCP ENSP00000293373/1-1127 SIAELLFLLE GIRSLVRRHI KVIQQYHLQY LARFDALVLS DIIQNLSVCP ENSTTRP00000004210/1-1128 SIAELLFLLE EIRALVRRHV KVIEQYHLQY LARFDALVLS DIIQNLSVCP bmy_04717T0/1-1061 SIAELLFLLE EIRALVRRHI KVIEQYHLQY LARFDALVLS DIIQNLSVCP BACU008104/1-1093 SIAELLFLLE EIRALVRRHI KVIEQYHLQY LARFDALVLS DIIQNLSVCP 501 550 ENSBTAP00000044656/1-1134 EEESIIMSSF VSTLSSLNLK QVDNGEKFEF SGLRLDWFRL QAYTSVAKAP ENSP00000293373/1-1127 EEESIIMSSF VSILSSLNLK QVDNGEKFEF SGLRLDWFRL QAYTSVAKAP ENSTTRP00000004210/1-1128 EEESIIMSSF VNTLSSLNLK QVDNGEKFEF SGLRLDWFRL QAYTSVAKAP bmy_04717T0/1-1061 EEESIIMSSF VNTLSSLNLK QVDNGEKFEF SGLRLDWFRL QAYTSVAKAP BACU008104/1-1093 EEESIIMSSF VNTLSSLNLK QVDNGEKFEF SGLRLDWFRL QAYTSVAKAP 551 600 ENSBTAP00000044656/1-1134 LHLHENPDLA KVMNLIVFHS RMLDSVENML VETSDLSTFC FHLRTFEKMF ENSP00000293373/1-1127 LHLHENPDLA KVMNLIVFHS RMLDSVEKLL VETSDLSTFC FHLRIFEKMF ENSTTRP00000004210/1-1128 LHLHENPDLA KVMNLIVFHS QMLDSVENML VETSDLSTFC FHLRTFEKMF bmy_04717T0/1-1061 LHLHENPDLA KVMNLIVFHS QMLDSVENML VETSDLSTFC FHLRTFEKMF BACU008104/1-1093 LHLHENPDLA KVMNLIVFHS QMLDSVENML VETSDLSTFC FHLRTFEKMF 601 650 ENSBTAP00000044656/1-1134 AVTLEEPAMF RYAIAFPLIC AHFVHCTHEM CPEEYPHLKN HGLHHCNSFL ENSP00000293373/1-1127 AMTLEESAML RYAIAFPLIC AHFVHCTHEM CPEEYPHLKN HGLHHCNSFL ENSTTRP00000004210/1-1128 AMTLEEPAML RYAIAFPLIC AHFVHCTHEM CPEEYPHLKN HGLHHCNSFL bmy_04717T0/1-1061 AMTLEEPAML RYAIAFPLIC AHFVHCTHEM CPEEYPHLKN HGLHHCNSFL BACU008104/1-1093 AMTLEEPAML RYAIAFPLIC AHFVHCTHEM CPEEYPHLKN HGLHHCNSFL 651 700 ENSBTAP00000044656/1-1134 EELAKQTSNC VLEICAEQRN LSEQLLPKHC ATTISKAKNK KTMKQRQAPR ENSP00000293373/1-1127 EELAKQTSNC VLEICAEQRN LSEQLLPKHC ATTISKAKNK KTRKQRQTPR ENSTTRP00000004210/1-1128 EELAKQTSNC VLEVCAEQRN LSEQLLPKHC ATTISKAKNK KTMKQRQTPR bmy_04717T0/1-1061 EELAKQTSNC VLEVCAEQRN LSEQLLPKHC ATTISKAKNK KTMKQRQTPR BACU008104/1-1093 EELAKQTSNC VLEVCAEQRN LSEQLLPKHC ATTISKAKNK KTMKQRQTPR 701 750 ENSBTAP00000044656/1-1134 KGEPERDKPG AESHRKNRSV VTNMDKLHLN LTELALTMNH VQSFSVFEHT ENSP00000293373/1-1127 KGEPERDKPG AESHRKNRSI VTNMDKLHLN LTELALTMNH VYSFSVFEHT ENSTTRP00000004210/1-1128 KGEPERDKPG AESHRKNRSI VTNMDKLHLN LTELALTMNH VHSFCVFEHT bmy_04717T0/1-1061 KGEPERDKPG AESHRKNRSI VTNMDKLHLN LTELALTMNH VHSFCVFEHT BACU008104/1-1093 KGEPERDKPG AESHRKNRSI VTNMDKLHLN LTELALTMNH VHSFCVFEHT 751 800 ENSBTAP00000044656/1-1134 IFPSEYLSSH LEARFNRAIV WLAGYNATTQ EIARPSELLA GVKAYISFIQ ENSP00000293373/1-1127 IFPSEYLSSH LEARLNRAIV WLAGYNATTQ EIVRPSELLA GVKAYIGFIQ ENSTTRP00000004210/1-1128 IFPSEYLSSH LEARLNRAIV WLAGYNATTQ EIARPSELLV GVKAYIGFIK bmy_04717T0/1-1061 IFPSEYLSSH LEARLN---- ---------- ---------- ---------- BACU008104/1-1093 IFPSEYLSSH LEARLNRAIV WLAGYNATTQ EIARPSELLA GVKAYIGFIK 801 850 ENSBTAP00000044656/1-1134 SLAQFLGADV SRIIRNALLQ QTQPLDSSGE QTITTLYTNW YLESLLRQAS ENSP00000293373/1-1127 SLAQFLGADA SRVIRNALLQ QTQPLDSCGE QTITTLYTNW YLESLLRQAS ENSTTRP00000004210/1-1128 SLAQFLGADV SRVIRNALLQ QTQPLDSCGE QTITTLYTNW YLESLLRQAS bmy_04717T0/1-1061 ---------- -RVIRNALLQ QTQPLDSCGE QTITTLYTNW YLESLLRQAS BACU008104/1-1093 SLAQFLGADV SRVIRNALLQ QTQPLDSCGE QTITTLYTNW YLESLLRQAS 851 900 ENSBTAP00000044656/1-1134 SGTIILSPAM QAFISLPREG EQNFSAEEFS DVSEMRALAE LLGPYGMKFL ENSP00000293373/1-1127 SGTIILSPAM QAFVSLPREG EQNFSAEEFS DISEMRALAE LLGPYGMKFL ENSTTRP00000004210/1-1128 SGTIILSPAM QAFISLPRDG EQNFSAEEFS DISELRALAE LLGPYGMKFL bmy_04717T0/1-1061 SGTIILSPAM QAFISLPREG EQNFSAEEFS DISELRALAE LLGPYGMKFL BACU008104/1-1093 SGTIILSPAM QAFISLPREG EQNFSAEEFS DISELRALAE LLGPYGMKFL 901 950 ENSBTAP00000044656/1-1134 SENLMWHVTS QIVELKKLVV ENMDVLVQIR SNFNKADLMA SLLPQLTGAD ENSP00000293373/1-1127 SENLMWHVTS QIVELKKLVV ENMDILVQIR SNFSKPDLMA SLLPQLTGAE ENSTTRP00000004210/1-1128 SENLMWHVTS QIVELKKLVV ENMDVLVQIR SNFSKADLMA SLLPQLMGAD bmy_04717T0/1-1061 SENLMWHVTS QIVELKKLVV ENMDVLVQIR SNFSKADLMA SLLPQLMGAD BACU008104/1-1093 SENLMWHVTS QIVELKKLVV ENMDVLVQIR SNFSKADLMA SLLPQLMGAD 951 1000 ENSBTAP00000044656/1-1134 NVLKRMTIIG VILSFRAMAQ EGLREVFSSH CPFLMGPIEC LKEFVTPDTD ENSP00000293373/1-1127 NVLKRMTIIG VILSFRAMAQ EGLREVFSSH CPFLMGPIEC LKEFVTPDTD ENSTTRP00000004210/1-1128 NVLKRMTIIG VILSFRAMAQ EGLREVFSSH CPFLMGPIEC LKEFVTPDTD bmy_04717T0/1-1061 NVLKRMTIIG VILSFRAMAQ EGLREVFSSH CPFLMGPIEC LKEFVTPDTD BACU008104/1-1093 NVLKRMTIIG VILSFRAMAQ EGLREVFSSH CPFLMGPIEC LKEFVTPDTD 1001 1050 ENSBTAP00000044656/1-1134 IKVTLSIFEL ASAAGVDCDI DPALVAAIAN LKTDLSSPEE EYKVACLLLI ENSP00000293373/1-1127 IKVTLSIFEL ASAAGVGCDI DPALVAAIAN LKADTSSPEE EYKVACLLLI ENSTTRP00000004210/1-1128 IKVTLSVFEL ASAAGVGCDI DPALVAAIAN LKTDTSSPEE EYKVACLLLI bmy_04717T0/1-1061 IKVTLSVFEL ASAAGVGCDI DPALVAAIAN LKT------- ---------- BACU008104/1-1093 IKVTLTVFEL ASAAGVGCDI DPALVAAIAN LKTDTSSPEE EYKVACLLLI 1051 1100 ENSBTAP00000044656/1-1134 FLAVSLPLLA MDAASFYSIE KDGYSNNIHC LTKAIIQVSA ALFTVYNKNI ENSP00000293373/1-1127 FLAVSLPLLA TDPSSFYSIE KDGYNNNIHC LTKAIIQVSA ALFTLYNKNI ENSTTRP00000004210/1-1128 FLAVSLPLLA MDPASFYSIE KDGYSNNIHC LTKAIIQVSA ALFTLYNKNI bmy_04717T0/1-1061 ---------- ---------- --GYSNNIHC LTKAIIQVSA ALFTLYNKNI BACU008104/1-1093 FLAVSLPLLA MDPASFYSIE KDGYSNNIHC LTKAIIQVSA ALFTLYNKNI 1101 1150 ENSBTAP00000044656/1-1134 ETHLKEFLVV ASVSLLQLGQ ETDKLKTRNR ESISLLMRLV VEESSFLTLD ENSP00000293373/1-1127 ETHLKEFLVV ASVSLLQLGQ ETDKLKTRNR ESISLLMRLV VEESSFLTLD ENSTTRP00000004210/1-1128 ETHLKEFLVV ASVSLLQLGQ ETDKLKTRNR ESISLLMRLV VEESSFLTLD bmy_04717T0/1-1061 ETHLKEFLVV ASVSLLQLGQ ETDKLKTRNR ESISLLMRLV VEESSFLTLD BACU008104/1-1093 ETHLKEFLVV ASVSLLQLGQ ETDKLKTRNR ESISLLMRLV VEESSFLTLD 1151 1200 ENSBTAP00000044656/1-1134 MLESCFPYVL LRNAYREVSR AFHLNRVSAS TH ENSP00000293373/1-1127 MLESCFPYVL LRNAYREVSR AFHLN----- -- ENSTTRP00000004210/1-1128 MLESCFPYVL LRNAYREVSR AFHLNR---- -- bmy_04717T0/1-1061 MLESCFPYVL LRNAYREVSR AFHLNRVSAS TH BACU008104/1-1093 MLESCFPYVL LRNAYREVSR AFHLNRVSAS TH