KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:18 2014 Check: 00 .. Name: ENSP00000383115/1-742 Len: 798 Check: 580 Weight: 1.00 Name: ENSBTAP00000044662/1-742 Len: 798 Check: 9460 Weight: 1.00 Name: ENSTTRP00000015801/1-738 Len: 798 Check: 3714 Weight: 1.00 Name: bmy_03991T0/1-423 Len: 798 Check: 5725 Weight: 1.00 Name: BACU014675/1-786 Len: 798 Check: 6381 Weight: 1.00 // 1 50 ENSP00000383115/1-742 MKDDFAEEEE VQSFGYKRFG IQEGTQCTKC KNNWALKFSI ILLYILCALL ENSBTAP00000044662/1-742 MKDDFAEEEE VHSFGYKRFG IQEGTQCTKC KNNWALKLSI ILLYILCALL ENSTTRP00000015801/1-738 ---DFAEEEE VHSFGYKRFG IQEGTQCTKC KNNWALKFSI ILLYILCALL bmy_03991T0/1-423 ------MSSG KHSAS--THG IQEGTQCTKC KNNWALKFSI ILLYILCALL BACU014675/1-786 -------MVE IHVPS--PAG IQEGTQCTKC KNNWALKFSI ILLYILCALL 51 100 ENSP00000383115/1-742 TITVAILGYK VVEKMDNVTG GMETSRQTYD DKLTAVESDL KKLGDQTGKK ENSBTAP00000044662/1-742 TITVAILGYK VVEKMDNVTG GMETSRQTYD DKLTAVESDL KKLGDQTGKK ENSTTRP00000015801/1-738 TITVAILGYK VVEKMDSVTG GMETSRQTYD DKLTAVESDL KKLGDQTGKK bmy_03991T0/1-423 TITVAILGYK VVEKMDSVTG GMETSRQTYD DKLTAVESDL KKLGDQTGKK BACU014675/1-786 TITVAILGYK VVEKMDSVTG GMETSRQTYD DKLTAVESDL KKLGDQTGKK 101 150 ENSP00000383115/1-742 AISTNSELST FRSDILDLRQ QLREITEKTS KNKDTLEKLQ ASGDALVDRQ ENSBTAP00000044662/1-742 ALSTNSELST FRSDILDLRQ QLREITEKTS KNKDTLEKLQ ASGDALVDRQ ENSTTRP00000015801/1-738 ALSTNSELST FRSDILDLRQ QLREITEKTS KNRDTLEKLQ VSGDALVDQQ bmy_03991T0/1-423 ALSTNSELST FRSDILDLRQ QLREITEKTS KNKDMLEKLQ VSGDALVDQQ BACU014675/1-786 ALSTNSELST FRSDILDLRQ QLREITEKTS KNKDTLEKLQ VSGDALVDQQ 151 200 ENSP00000383115/1-742 SQLKETLENN SFLITTVNKT LQAYNGYVTN LQQDTSVLQG NLQNQMYSHN ENSBTAP00000044662/1-742 SQLKETLENN SFLITTVNKT LQAYNGYVTN LQQDTSVLQG NLQSQMYSHN ENSTTRP00000015801/1-738 SQLKETLENN SFLITTVNKT LQAYNGYVTN LQQDTSVLQG NLQSQMYSHN bmy_03991T0/1-423 SQLKETLENN SFLITTVNKT LQAYNGYVTN LQQDTSVLQG NLQSQMYSHN BACU014675/1-786 SQLKETLENN SFLITTVNKT LQAYNGYVTN LQQDTSVLQG NLQSQMYSHN 201 250 ENSP00000383115/1-742 VVIMNLNNLN LTQVQQRNLI TNLQRSVDDT SQAIQRIKND FQNLQQVFLQ ENSBTAP00000044662/1-742 VVIMNLNNLN LTQVQQRNLI TNLQRSVDDT SQAIQRIKND FQNLQQVFLQ ENSTTRP00000015801/1-738 VVIMNLNNLN LTQVQQRNLI TNLQRSLDDT SQAIQRIKND FQNLQQV-PQ bmy_03991T0/1-423 VVIMNLNNLN LTQVQQRNLI TNLQRSLDDT SQAIQRIKND FQNLQQVFFQ BACU014675/1-786 VVIMNLNNLN LTQVQQRNLI TNLQRSLDDT SQAIQRIKND FQNLQQVFFQ 251 300 ENSP00000383115/1-742 AKKDTDWLKE KVQSLQTLAA NNSALAKANN DTLEDMNSQL NSFTGQMENI ENSBTAP00000044662/1-742 AKKDTDWLKE KVQSLQTLAA NNSALAKANN DTLEDMNSQL SSFTGQMDNI ENSTTRP00000015801/1-738 AKKDTDWLKE KVQSLQTLAA NNSALTKANN DTLEDMNSQL SSFAGQMDNI bmy_03991T0/1-423 AKKDTDWLKE KVQSLQTLAA NNSALAKANN DTLEDMNSQL SSFAGQMDNI BACU014675/1-786 ARKDTDWLKE KVQSLQTLAA NNSALAKANN DTLEDMNSQL SSFAGQMDNI 301 350 ENSP00000383115/1-742 TTISQANEQN LKDLQDLHKD AENRTAIKFN QLEERFQLFE TDIVNIISNI ENSBTAP00000044662/1-742 TTASQANEQN LKDLQDVHRD AENRTAAKFS QLEERFQLFE SDIVNIISNI ENSTTRP00000015801/1-738 TTASQANEQN LKDLQDVHRD AENRTAVKFS QLEERFQLFE TDIVNIISNI bmy_03991T0/1-423 TTASQANEQN LKDLQDVHRD AENRTAVKFS QLEERFQLFE TDIVNIISNI BACU014675/1-786 TTASQANEQN LKDLQDVHRD AENRTAVKFS QLEERFQLFE TDIVNIISNI 351 400 ENSP00000383115/1-742 SYTAHHLRTL TSNLNEVRTT CTDTLTKHTD DLTSLNNTLA NIRLDSVSLR ENSBTAP00000044662/1-742 SYTAHYLRTL TSNLNEVRTT CTDTLTKHTD DLTSLNNTLA NIRLDSVSLR ENSTTRP00000015801/1-738 SYTAHYLRTL TSNLNEVRTT CTDTLTKHTD DLTSLNNTLA NIRLDSVSLR bmy_03991T0/1-423 SYTAHYLRTL TSNLNEVRTT CTDTLTKHTD DLTSLNNTLA NIRLDSVSLR BACU014675/1-786 SYTAHYLRTL TSNLNEVRTT CTDTLTKHTD DLTSLNNTLA NIRLDSVSLK 401 450 ENSP00000383115/1-742 MQQDLMRSRL DTEVANLSVI MEEMKLVDSK HGQLIKNFTI LQGPPGPRGP ENSBTAP00000044662/1-742 MQQDLMRSRL DTEVANLSVI MEEMKLVDSK HGQLIKNFTI LQGPPGPRGP ENSTTRP00000015801/1-738 MQQDLMRSRL DTEVANLSVI MEEMKLVDSK HGQLIKNFTI LQGPPGPRGP bmy_03991T0/1-423 MQQDLMRSRL DTEVANLSVI MEEMKLVDSK H--------- ---------- BACU014675/1-786 MQQDLMRSRL DTEVANLSVI MEEMKLVDSK HGQLIKNFTI LQGPPGPRGP 451 500 ENSP00000383115/1-742 RGDRGSQGPP GPTGNKGQKG EKGEPGPPGP AGERGPIGPA GPPGERGGKG ENSBTAP00000044662/1-742 KGDRGQQGPP GPTGNKGQKG EKGEPGPPGP AGERGPIGPV GPPGERGSKG ENSTTRP00000015801/1-738 KGDRGQQGPP GPTGNKGQKG EKGEPGPPGP AGERGPIGPV GPPGERGGKG bmy_03991T0/1-423 ---------- ---------- ---------- ---------- ---------- BACU014675/1-786 KGDRGQQGPP GPTGNKGQKG EKGEPGPPGP AGERGPIGPV GPPGERGGKG 501 550 ENSP00000383115/1-742 SKGSQGPKGS RGSPGKPGPQ GSSGDPGPPG PPGKEGLPGP QGPPGFQGLQ ENSBTAP00000044662/1-742 SKGLQGSKGS RGSPGKPGPQ GPSGDPGPPG PPGKDGLPGP QGPPGFQGLQ ENSTTRP00000015801/1-738 SKGLQGPKGS RGSPGKPGPQ GPSGDPGPTG PPGKDGLPGP QGPPGFQGLQ bmy_03991T0/1-423 ---------- ---------- ---------- ---------- ---------- BACU014675/1-786 SKGLQGPKGS RGSPGKPGPQ GPSGDPGPPG PPGKDGLPGP QGPPGFQGLQ 551 600 ENSP00000383115/1-742 GTVGEPGVPG PRGLPGLPGV PGMPGPKGPP GPPGPSGAVV PLALQNEPTP ENSBTAP00000044662/1-742 GTVGEPGVPG PRGLPGLPGM PGMPGIKGPP GPPGPSGAAV PLALKTEPTT ENSTTRP00000015801/1-738 GTVGEPGVPG PRGLPGLLGV PGMPGPKGPP GPPGPSGAAV PLALQSEPTA bmy_03991T0/1-423 ---------- ---------- ---------- ---------- ---------- BACU014675/1-786 GTVGEPGVPG PRGLPGLPGV PGMPGPKGPP GPPGPSGAAV PLALQSEPTT 601 650 ENSP00000383115/1-742 APEDNGCPPH WKNFTDKCYY FSVEKEIFED AKLFCEDKSS HLVFINTREE ENSBTAP00000044662/1-742 APEDNGCLPY WKNFTDKCYY FSTERDFFED AKLFCERMSS HLVFINTGEE ENSTTRP00000015801/1-738 APEANGCPPH WKNFTDKCYY FSVEKEIFED AKLSCEDKSS HLIFINTREE bmy_03991T0/1-423 ---------- ---------- ---------- ---------- ---------- BACU014675/1-786 APEANGCPPH WKNFTDKCYY FSVEKEIFED AKLSCEDRSS HLIFINTREE 651 700 ENSP00000383115/1-742 QQWIKKQMVG RESHWIGLTD SERENEWKWL DGTSPDYK-- ---------- ENSBTAP00000044662/1-742 QQWIKNQMVA KQNYWIGLTD LEQENEWRWL DGTLLEYK-- ---------- ENSTTRP00000015801/1-738 QQWIKKQMVG RENYWIGLTD SEQENEWKWL DGTSLEYK-- ---------- bmy_03991T0/1-423 ---------- ---------- ---------- ---------- ---------- BACU014675/1-786 QQWIKKQMVG RENYWIGLTD SEQENEWKWL DGTSLEYNFF LNDLVSYTFL 701 750 ENSP00000383115/1-742 ---------- ---------- ---------- ---------- ----NWKAGQ ENSBTAP00000044662/1-742 ---------- ---------- ---------- ---------- ----NWKAGQ ENSTTRP00000015801/1-738 ---------- ---------- ---------- ---------- ----NWKAGQ bmy_03991T0/1-423 ---------- ---------- ---------- ---------- ---------- BACU014675/1-786 KLRLQPECGD ELQVDDSPTH RKFKYATNEG VCGMTVSYRL EESLNWKAGQ 751 800 ENSP00000383115/1-742 PDNWGHGHGP GEDCAGLIYA GQWNDFQCED VNNFICEKDR ETVLSSAL ENSBTAP00000044662/1-742 PDNWGHGHGP GEDCAGLINF GQWNDFPCED MNHFICEKDR ERELAITL ENSTTRP00000015801/1-738 PDNWSHGHGP GEDCAGLIYA GQWNDFQCED INNFICEKDR ETVPSPAL bmy_03991T0/1-423 ---------- ---------- ---------- ---------- -------- BACU014675/1-786 PDNWGHGHGP GEDCAGLIYA GQWNDFQCED INNFICEKDR ETGVD---