KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:56:20 2014  Check: 00 ..

 Name: bmy_08114T0/1-197         Len:    252  Check:  3996  Weight:  1.00
 Name: ENSP00000366402/1-229     Len:    252  Check:  3276  Weight:  1.00
 Name: ENSTTRP00000009566/1-231  Len:    252  Check:  157  Weight:  1.00
 Name: ENSBTAP00000044717/1-232  Len:    252  Check:  1733  Weight:  1.00

//


                          1                                                   50
bmy_08114T0/1-197         MDSDGVVEEG HMAQACSCGS RCELKSLLAA IIVIQQRTRG IGSKRCALT- 
ENSP00000366402/1-229     MDS------- ---LDRSCQD WCDRKQHW-- ---LEIGPPD LVERKGSLTL 
ENSTTRP00000009566/1-231  MGS------- ---CDSSCQG WCSGSQHW-- ---FELGPTD LMERKGSLTL 
ENSBTAP00000044717/1-232  MDS------- ---SDSSCQE WCSHGQYW-- ---LELGPTD LMERKGSLTL 


                          51                                                 100
bmy_08114T0/1-197         -TYAEEYAPP ---YEYQPLI PSL-KSYPIV LPKNQNKGKV AEKLHQKIGL 
ENSP00000366402/1-229     RSHHKKYSKP VLVYSWHRDR EAFPKGYDIE GPEKVK--KL CNSTYRRLGT 
ENSTTRP00000009566/1-231  RSHHKKYSKP VLVYSWHCDR EAYPKDYDIE GPEEVK--KL CNSTYWRLGT 
ENSBTAP00000044717/1-232  RSHHKKYSKP VLVYSWHRDR ETYPKDYDIE GPEEVK--KL CNSTYRRLGT 


                          101                                                150
bmy_08114T0/1-197         NLAIC----T HEKLCDVILA T--------- ---------G NYHVHLGLKL 
ENSP00000366402/1-229     DESPIWTSET HEKLSQMCLN TEWVEMKSKA LLNEETVSSG IIERVTGLPA 
ENSTTRP00000009566/1-231  NEPPIWISET HEKMAQVCLN TELAEIKSKA LLNEETMSSG IIERDTGLPA 
ENSBTAP00000044717/1-232  SEPPVWISET REKMAQVCLN TKLAKIKSKA LLNEETMNSG IIERDTGLPA 


                          151                                                200
bmy_08114T0/1-197         ---------- ---WN---LF GSLSTVK--- --------LG YPCQDDDYSV 
ENSP00000366402/1-229     TGFGAVFPRH PPDWS---KM CALTTYSEDY VPPYDYQPHA YPCQ-DDYSI 
ENSTTRP00000009566/1-231  TGFGALFPRH PSDWYEMFKM CALTTYAEEY APPYEYQPRG YPCQ-DDYSV 
ENSBTAP00000044717/1-232  TGFGALFTRH SPDWS---KM CTLTTYAEEY APPYEYQPLG DPCQDDDYSI 


                          201                                                250
bmy_08114T0/1-197         VHRKCHSQFT DLNGSKRFGI NTWHDESGTY ANSYVKRKLY PLTSGPVVPF 
ENSP00000366402/1-229     VHRKCRSQFT DLNGSKRFGI NTWHDESGIY ANSDVKQKLY PLTSGPIVPI 
ENSTTRP00000009566/1-231  VYRKCRSQ-T DLNG-KRFGI NTWHDESGTY VNSYVKRKLY PFTSGLVGPF 
ENSBTAP00000044717/1-232  VHRKCRSQFT DLDGSKRVGI NTWHDESGIY ANSYVKRKLY SLTGGPIAPF 


                          251                                                300
bmy_08114T0/1-197         LK 
ENSP00000366402/1-229     -- 
ENSTTRP00000009566/1-231  L- 
ENSBTAP00000044717/1-232  LK