KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:23 2014 Check: 00 .. Name: BACU001678/1-619 Len: 746 Check: 4560 Weight: 1.00 Name: ENSP00000295006/1-700 Len: 746 Check: 7527 Weight: 1.00 Name: ENSTTRP00000004259/1-700 Len: 746 Check: 1614 Weight: 1.00 Name: bmy_13239T0/1-598 Len: 746 Check: 7512 Weight: 1.00 Name: ENSBTAP00000044733/1-700 Len: 746 Check: 893 Weight: 1.00 // 1 50 BACU001678/1-619 ---------- --------MG EGRTVKE--- ---------- ---------- ENSP00000295006/1-700 MAGIAAKLAK DREAAEGLGS HDRAIKYLNQ DYEALRNECL EAGTLFQDPS ENSTTRP00000004259/1-700 MAGIAVKLAR DREAAEGLGS HERAIKYLNQ DYAALRDECL EAGALFQDPS bmy_13239T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044733/1-700 MAGIAAKLAK DREAAEGLGS HERAVKYLNQ DYAALRDECL EAGALFQDPS 51 100 BACU001678/1-619 --------GF VEL-----VA VGLEIQRS-- ---------- ---------- ENSP00000295006/1-700 FPAIPSALGF KELGPYSSKT RGIEWKRPTE ICADPQFIIG GATRTDICQG ENSTTRP00000004259/1-700 FPALPSSLGF KELGPYSSKT RGIEWKRPTE ICDDPQFITG GATRTDICQG bmy_13239T0/1-598 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044733/1-700 FPALPSSLGF KELGPYSSKT RGIEWKRPTE ICDNPQFITG GATRTDICQG 101 150 BACU001678/1-619 --------AM IPNLLLEE-- -----PLAQT SAKEPW---- ---FWQYGEW ENSP00000295006/1-700 ALGDCWLLAA IASLTLNEEI LARVVPLNQ- SFQENYAGIF HFQFWQYGEW ENSTTRP00000004259/1-700 ALGDCWLLAA IASLTLNEEV LARVVPLDQ- SFQENYAGIF HFQFWQYGEW bmy_13239T0/1-598 --GDCWLLAA IASLTLNEEV LARVVPLDQ- SFQENYAGIF HFQFWQYGEW ENSBTAP00000044733/1-700 ALGDCWLLAA IASLTLNEEI LARVVPLDQ- SFQENYAGIF HFQFWQYGEW 151 200 BACU001678/1-619 VEVVVDDRLP TKDGELLFVH SAEGSEFWSA LLEKAYAKIS GCYEARSGGA ENSP00000295006/1-700 VEVVVDDRLP TKDGELLFVH SAEGSEFWSA LLEKAYAKIN GCYEALSGGA ENSTTRP00000004259/1-700 VEVVVDDRLP TKDGELLFVH SVEGSEFWSA LLEKAYAKIN GCYEALSGGA bmy_13239T0/1-598 VEVVVDDRLP TKDGELLFVH SAEGSEFWSA LLEKAYAKIN GCYEALSGGA ENSBTAP00000044733/1-700 VEVVVDDRLP TKDGELLFVH SAEGSEFWSA LLEKAYAKIN GCYEALSGGA 201 250 BACU001678/1-619 TTEGFEDFTG GIAEWYELRK APPSLFKIIQ KALQKGSLLG CSIDITSAAD ENSP00000295006/1-700 TTEGFEDFTG GIAEWYELKK PPPNLFKIIQ KALQKGSLLG CSIDITSAAD ENSTTRP00000004259/1-700 TTEGFEDFTG GIAEWYELRK APPNLFRIIQ KALQKGSLLG CSIDITSAAD bmy_13239T0/1-598 TTEGFEDFTG GIAEWYELRK APPNLFRIIQ KALQKGSLLG CSIDITSAAD ENSBTAP00000044733/1-700 TTEGFEDFTG GIAEWYELRK APPNLFRIIQ KALQKGSLLG CSIDITSAAD 251 300 BACU001678/1-619 SEAITFQKLV KGHAYSVTGA EEVESRGSLQ KLIRIRNPWG EVEWTGQWND ENSP00000295006/1-700 SEAITFQKLV KGHAYSVTGA EEVESNGSLQ KLIRIRNPWG EVEWTGRWND ENSTTRP00000004259/1-700 SEAITFQKLV KGHAYSVTGA EEVESRGSLQ KLIRIRNPWG EVEWTGQLXX bmy_13239T0/1-598 SEAITFQKLV KGHAYSVTGA EEVESSGSLQ KLIRIRNPWG EVEWTGQWND ENSBTAP00000044733/1-700 SEAITFQKLV KGHAYSVTGA EEVESRGSLQ KLIRIRNPWG EVEWTGQWND 301 350 BACU001678/1-619 E--------- ---------- ------MSFS DFLRHYSRLE ICNLTPDTLT ENSP00000295006/1-700 NCPSWNTIDP EERERLTRRH EDGEFWMSFS DFLRHYSRLE ICNLTPDTLT ENSTTRP00000004259/1-700 XCPNWTTIDP EERERLTRRQ EDGEFWMSFN DFLRHYSRLE ICNLTPDTLT bmy_13239T0/1-598 NCPNWNTVDP EVRERLTRQH EDGEFWMSLN DFLRHYSRLE ICNLTPDTLT ENSBTAP00000044733/1-700 NCPNWNTVDP EVRETLTRQH EDGEFWMSFN DFLRHYSRLE ICNLTPDTLT 351 400 BACU001678/1-619 SDAYKKWKLT KMDGNWRRGS TAGGCRNYPN TFWMNPQYLI KLEEEDEDQE ENSP00000295006/1-700 SDTYKKWKLT KMDGNWRRGS TAGGCRNYPN TFWMNPQYLI KLEEEDEDEE ENSTTRP00000004259/1-700 SDTYKKWKLT KMDGNWRRGS TAGGCRNYPN TFWMNPQYLI KLEEEDEDQE bmy_13239T0/1-598 SDAYKKWKLT KMDGNWRRGS TAGGCRNFPN TFWMNPQYLI KLEEEDEDQE ENSBTAP00000044733/1-700 SDSYKKWKLT KMDGNWRRGS TAGGCRNYPN TFWMNPQYLI KLEEEDEDQE 401 450 BACU001678/1-619 DGENGCTFLV GLIQKHRRRQ RKMGEDMHTI GFGIYE---- FTGQTNIHLS ENSP00000295006/1-700 DGESGCTFLV GLIQKHRRRQ RKMGEDMHTI GFGIYEVPEE LSGQTNIHLS ENSTTRP00000004259/1-700 DGENGCTFLV GLIQKHRRRQ RKMGEDMHTI GFGIYEIPEE LTGQNNVHLS bmy_13239T0/1-598 DGENGCTFLV GLIQKHRRRQ RKMGEDMHTI GFGIYEVWEQ FTGQTNIHLS ENSBTAP00000044733/1-700 DGESGCTFLV GLIQKHRRRQ RKMGEDMHTI GFGIYEVPEE LTGQTNIHLS 451 500 BACU001678/1-619 KNFFLTHRAR ERSDTFINLR EVLNRFKLPP GEYILVPSTF EPNKDGDFCI ENSP00000295006/1-700 KNFFLTNRAR ERSDTFINLR EVLNRFKLPP GEYILVPSTF EPNKDGDFCI ENSTTRP00000004259/1-700 KSFFLTHRAR ERSDTFINLR EVLNRFKLPP GEYILVPSTF EPNKDGDFCI bmy_13239T0/1-598 KNFFLTHRAR ERSDTFINLR EVLNRFKLPP GEYILVPSTF EPNKDGDFCI ENSBTAP00000044733/1-700 KKFFLTTRAR ERSDTFINLR EVLNRFKLPP GEYIVVPSTF EPNKDGDFCI 501 550 BACU001678/1-619 RVFSEKKADY QVVDDEIEAN LEEIDVSEDD IDDGFRRLFA QLAGEIDVSE ENSP00000295006/1-700 RVFSEKKADY QAVDDEIEAN LEEFDISEDD IDDG------ ---------- ENSTTRP00000004259/1-700 RVFSEKKADY QVVDDEIEAN LEEIDVSEDD IDDG------ ---------- bmy_13239T0/1-598 RVFSEKKADY QVVDDEIEAN LEEIDVSEDD XNDG------ ---------- ENSBTAP00000044733/1-700 RVFSEKKADY QVVDDEIEAN IDEIDISEDD IDDG------ ---------- 551 600 BACU001678/1-619 DDIDDGFRRL FAQLAGEDAE ISAFELQTIL RRVLAKRQDI KSDGFSIETC ENSP00000295006/1-700 ------FRRL FAQLAGEDAE ISAFELQTIL RRVLAKRQDI KSDGFSIETC ENSTTRP00000004259/1-700 ------FRRL FAQLAGEDAE ISAFELQTIL RRVLARRQDI KSDGFSIETC bmy_13239T0/1-598 ------FRRL FXQLAGEDAE ISAFELQTIL RRVLAKRQDI KSDGFSIETC ENSBTAP00000044733/1-700 ------FRRL FAQLAGEDAE ISAFELQTIL RRVLAKRQDI KSDGFSIETC 601 650 BACU001678/1-619 KIMVDMLDSD GSGKLGLKEF YVLWTKIQKY QKIYREIDVD RSGTMNSYEM ENSP00000295006/1-700 KIMVDMLDSD GSGKLGLKEF YILWTKIQKY QKIYREIDVD RSGTMNSYEM ENSTTRP00000004259/1-700 KIMVDMLDSD GSGKLGLKEF YILWTKIQKY QKIYREIDVD RSGTMNSYEM bmy_13239T0/1-598 KIMVDMLDSD GSGKLGLKEF YVLWTKIQKY QKIYREIDVD RSGTMNSYEM ENSBTAP00000044733/1-700 KIMVDMLDSD GSGKLGLKEF YILWTKIQKY QKIYREIDVD RSGTMNSYEM 651 700 BACU001678/1-619 RKALEEAGFK MPCQLHQVIV ARFADDQLVI DFDNFVRCLV RLETLFRIFK ENSP00000295006/1-700 RKALEEAGFK MPCQLHQVIV ARFADDQLII DFDNFVRCLV RLETLFKIFK ENSTTRP00000004259/1-700 RKALEEAGFK MPCQLHQVIV ARFADDQLVI DFDNFVRCLF RLETLFRIFK bmy_13239T0/1-598 RKALEEAGFK MPCQLHQVIV ARFADDQLVI DFDNFVRCLI RLETLFRIFK ENSBTAP00000044733/1-700 RKALEEAGFK MPCQLHQVIV ARFADDDLII DFDNFVRCLI RLETLFRIFK 701 750 BACU001678/1-619 QLDPEDTGMI QLDLISTSPL AFVHGFGGDV RGNDVNVFHG FTLGKC ENSP00000295006/1-700 QLDPENTGTI ELDLISWLCF SVL------- ---------- ------ ENSTTRP00000004259/1-700 RLDPEDTGMI QLDLISWLCF SVL------- ---------- ------ bmy_13239T0/1-598 QLDPEDTGMI QLDLISWLCF SVL------- ---------- ------ ENSBTAP00000044733/1-700 QLDPENTGMI QLDLISWLSF SVL------- ---------- ------