KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:26 2014 Check: 00 .. Name: ENSP00000222567/1-338 Len: 341 Check: 2212 Weight: 1.00 Name: ENSBTAP00000044811/1-331 Len: 341 Check: 5499 Weight: 1.00 Name: ENSTTRP00000009907/1-247 Len: 341 Check: 3676 Weight: 1.00 Name: bmy_20353T0/1-202 Len: 341 Check: 5355 Weight: 1.00 Name: BACU000461/1-332 Len: 341 Check: 500 Weight: 1.00 // 1 50 ENSP00000222567/1-338 MAAGCSEAPR PAAASDGSLV GQAGVLPCLE LPTYAAACAL VNSRYSCLVA ENSBTAP00000044811/1-331 MAAGCSVAPR PKAASEGP-- --AGVLPCLE LPTYAAACAL VNSRYSCLVA ENSTTRP00000009907/1-247 ---------- ---------- ---------- ---------- ---------- bmy_20353T0/1-202 ---------- ---------- ---------- ---------- ---------- BACU000461/1-332 MAAGCSASPR PKAASEGPVV GPAGVLPCLE LPTYAAACAL VNSRYSCLVA 51 100 ENSP00000222567/1-338 GPHQRHIALS PRYLNRKRTG IREQLDAELL RYSESLLGVP IAYDNIKVVG ENSBTAP00000044811/1-331 GPHRRHIALS PRYLNKKRTG IREQLNAELL RYSESLLGVP IAYDNIKVVG ENSTTRP00000009907/1-247 ---------- ---------- ---------- -----LLGVP IAYDNIKVVG bmy_20353T0/1-202 ---------- ---------- ---------- ---------- ---------- BACU000461/1-332 GPHRRHIALS PRYLNRKRTG IREQLDAELL RYSESLLGVP IAYDNIKVVG 101 150 ENSP00000222567/1-338 ELGDIYDDQG HIHLNIEADF VIFCPEPGQK LMGIVNKVSS SHIGCLVHGC ENSBTAP00000044811/1-331 ELGDIYDDQG HIHLNIEADF VIFCPEPGQK LMGTVNKVSS SHIGCLVHGC ENSTTRP00000009907/1-247 ELGDIYDDQG HIHLNIEADF VIFCPEPGQK LMGTVNKVSS SHIGCLVHGC bmy_20353T0/1-202 ---------- ---------- ---------M LKGTVNKVSS SHIGCLVHGC BACU000461/1-332 ELGDIYDDQG HIHLNIEADF VIFCPEPGQK LRGTVNKVSS SHIGCLVHGC 151 200 ENSP00000222567/1-338 FNASIPKPEQ LSAEQWQTME INMGDELEFE VFRLDSDAAG VFCIRGKLNI ENSBTAP00000044811/1-331 FNASIPKPEQ MPADQWQTLQ INVGDELEFE VFRLDSDAAG VFCIRGKLSI ENSTTRP00000009907/1-247 FNASIPKPEQ MPAEQWQTLE INMGDELEFE VFRLDSDAAG VFCIRGKLNI bmy_20353T0/1-202 FNASIPKPEQ MPAEQWQTLE INVGDELEFE VFRLDSDAAG VFCIRGKLSI BACU000461/1-332 FNASIPKPEQ MPAEQWQTLE INVGDELEFE VFRLDSDAAG VFCIRGKLNI 201 250 ENSP00000222567/1-338 TSLQFKRSEV SEEVTENGTE EAAKKP--KK KKKKKDPETY EVDSGTTKLA ENSBTAP00000044811/1-331 ASLQTKCSAV PEEAPETGAD EPVEKPPKKK KKKKKDREPC EVEGGATEPE ENSTTRP00000009907/1-247 TSLQTKCSAV SEEVTETGTE EATEKPQKKK KKKKKDPEPY EVESGITELA bmy_20353T0/1-202 ASLQTKCSAV SEEVTETGTE EATEKPRKKK KKKKKDPEPY EVEGDTTELA BACU000461/1-332 TSLQTKCSAV SEEVTETGTE EATEKPRKKK KKKKKDPEPY EVEGGTTELA 251 300 ENSP00000222567/1-338 DDADDTPMEE SALQNTNNAN GIWEEEPKKK KKKKKHQEVQ DQDPVFQGSD ENSBTAP00000044811/1-331 DFAEVATKDE ADLHVSNSVN GLWEEEPKKK KKKKKQ-EHQ DQEPVFQGSD ENSTTRP00000009907/1-247 DFADVTMKEE TDLQINNNVN GLWKEEP--- KKKKKH---- -QDPVFQGSD bmy_20353T0/1-202 DFADVTMKEE TDLQINNNVN GLWEEEPKKK KKKKKH---- -QDPVFQGSD BACU000461/1-332 DFADVTMKEE TDLQINNNVS GLWEEEP-KK KKKKKH---- -QDSVFQGSD 301 350 ENSP00000222567/1-338 SSGYQSDHKK KKKKRKHSEE AEFTPP-LKC SPKRKGKSNF L ENSBTAP00000044811/1-331 SSGYQSDHTK KKKKRK-SEE AEFTPL-VER TPKKKREK-- - ENSTTRP00000009907/1-247 SSGYQSDHKK KKKKSKHSEE AEFAPL-LEH APKRKGKSNF L bmy_20353T0/1-202 SSGYQSDHKK KKKK-KHSEE AEFTPL-LEH APKKKREK-- - BACU000461/1-332 SSGYQSDHKK KKKKRKHSEE AEFTPPLLEH APKKKREK-- -