KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:28 2014 Check: 00 .. Name: BACU009591/1-120 Len: 268 Check: 4621 Weight: 1.00 Name: ENSP00000412215/1-186 Len: 268 Check: 1393 Weight: 1.00 Name: bmy_09661T0/1-186 Len: 268 Check: 9158 Weight: 1.00 Name: ENSTTRP00000016027/1-189 Len: 268 Check: 7182 Weight: 1.00 Name: ENSBTAP00000044861/1-197 Len: 268 Check: 6064 Weight: 1.00 // 1 50 BACU009591/1-120 ---------- ---------- -------MV- ---------- ---------- ENSP00000412215/1-186 ---------- ---------- -------MAS --------VS YQKPTSTTVG bmy_09661T0/1-186 MGFQESPVTQ LKCHREARFS GELLSPHLAC KARSLSTILS KTKCLDSAVK ENSTTRP00000016027/1-189 ---------- ---------- -------MAG --------VS FQEPVPTTVG ENSBTAP00000044861/1-197 ---------- ---------- -------MAC --------VT FREPISATVG 51 100 BACU009591/1-120 ---------- ---------- ---------- --------DP EELR--LSPQ ENSP00000412215/1-186 KQMIFT---- ---------- ---------- --------GP DYIKDYLPKI bmy_09661T0/1-186 HRLVTTPTTA SEHVVKPRPP VLPANPELRD PRQNERGHGV RKGQDHLPEV ENSTTRP00000016027/1-189 RRMVFT---- ---------- ---------- --------GP DYVKDHLPKV ENSBTAP00000044861/1-197 KRMVFT---- ---------- ---------- --------GP AYVKDHLPQV 101 150 BACU009591/1-120 PPPSSPSSSD ASSASSPGTP GGLGRPVPNR NSGRPVDPLE EVENNLGI-- ENSP00000412215/1-186 HQHTSYVGEQ HLALEKTGDL RYLWRPASNR SLPAKYKHEY VSEIGWRIPQ bmy_09661T0/1-186 AEHTSYIGEK RPALEKTGDL RYLRRPASKR SLPAKYKPEY VGEIGWGIPA ENSTTRP00000016027/1-189 AQHTSYIGEK RPALEKTGDL RYLQRPASKR SLPAKYKPEY VGDIGWGIPV ENSBTAP00000044861/1-197 AQHTAYIGEK RPALEKTGDL RYLWRPASNR SLPAKYKPEY VGEIGWGIPE 151 200 BACU009591/1-120 -EFEGLSYFQ AAFSLTKLLE AASAVSAQVE ELAFKCT--- ---------- ENSP00000412215/1-186 YNFINKSRLG SGFH----IK YEELSQASLD SITHRYQNPW QPKPHVLDMQ bmy_09661T0/1-186 YDFINKTRLQ TGFH----VK YEEFSQAAVE KLSHRYQNPW ---------- ENSTTRP00000016027/1-189 CDFINTTRLQ TGFH----VK YEEFSQAAVE KLSHRYQNPW QPTPSVMDAE ENSBTAP00000044861/1-197 YDFINKTRLQ TGFH----IK YEEFSQAAID KLSHRYQSPW QPNPSIMDAE 201 250 BACU009591/1-120 ---------- ------ENAR FLKTWRDLLK EGYDSLKPDN ---------- ENSP00000412215/1-186 GKQSRASFAW HMSAFEDTDQ RNSKWAILVR QCKSSLPRAS KPPKLPKLPK bmy_09661T0/1-186 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016027/1-189 WSFSRGFIAW HMGDYEDTNQ RNSKRAVLLR QSQVALPRVS RPPKLSKLPK ENSBTAP00000044861/1-197 GSSSRGFIAW HMGDYEDTSQ RNSKRAVLLR QSKAALPIGS RPPKLPKLPK 251 300 BACU009591/1-120 ---------- -------- ENSP00000412215/1-186 KEKKRKH--- -------- bmy_09661T0/1-186 ---------- -------- ENSTTRP00000016027/1-189 EKKSSCLNV- ------C- ENSBTAP00000044861/1-197 KEEKSKFRPL HQHDARCY