KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:29 2014 Check: 00 .. Name: ENSP00000378431/1-1228 Len: 1353 Check: 7195 Weight: 1.00 Name: ENSBTAP00000044864/1-1080 Len: 1353 Check: 14 Weight: 1.00 Name: ENSTTRP00000011066/1-1084 Len: 1353 Check: 7972 Weight: 1.00 Name: bmy_19387T0/1-1251 Len: 1353 Check: 743 Weight: 1.00 Name: BACU010616/1-196 Len: 1353 Check: 5610 Weight: 1.00 // 1 50 ENSP00000378431/1-1228 MKGARLFVLL SSLWSGGIGL NNSKHSWTIP EDGNSQKTMP SASVPPNKIQ ENSBTAP00000044864/1-1080 MKGARLFILL SSLWSGGFGL NGPMHTWTTT EDENSQKNAT SASVPPNKGQ ENSTTRP00000011066/1-1084 ---------- ---------- ---------- ---------- ---------- bmy_19387T0/1-1251 ---------- --LWSGGIGL NNTTHTWTTP EDENSRNSQT SAPVPLSKIQ BACU010616/1-196 MKGARLFILL SSLWSGGIGL NNTTHTWTTP EDENSWNPQT SAPVPLSKVQ 51 100 ENSP00000378431/1-1228 SLQILPTTRV MSAEIATTPE ARTSEDSLLK STLPPSETSA PAEGVRNQTL ENSBTAP00000044864/1-1080 SLQVLPTPKI TSTEVATAPD SSTSEDSLLK SIPLPSETSA SPEGVRKQTL ENSTTRP00000011066/1-1084 ---------- ---------- ---------- ---------- ---------- bmy_19387T0/1-1251 SLQVLPTSQI TSVEMATAPE ASTSEESLLK STLLPSETSA SPKRVRSQTP BACU010616/1-196 SLQVQPTTQV TSVEMATAPE ASTSEESLLK STLLPSETSA SPERVRNPTP 101 150 ENSP00000378431/1-1228 TSTEKA-EGV VKLQNLTLPT NASIKFNPGA ESVVLSNSTL KFLQSFARKS ENSBTAP00000044864/1-1080 TLTEKTEEGM LKLQTLALQT EPTLKFSPKA ESVILSNSTL KFLQSFARKT ENSTTRP00000011066/1-1084 ---------- ---------- --------KA ESVL--SNSL KF-QSFARKS bmy_19387T0/1-1251 TPTGKT-EAV LKLQTLALPA KSSIRFSPKA ESVVLSNSTL KFLQSFARKS BACU010616/1-196 TPTGKT-EAV LKLQTLALPA KSSIRFSPKA ESVVLSNSTL KFLQSFARKS 151 200 ENSP00000378431/1-1228 NEQATSLNTV GGTGGIGGVG GTGGVGNRAP RETYLSRGDS SSSQRTDYQK ENSBTAP00000044864/1-1080 NEQGISPNSV ---------- --GGVGNRSP RETYLSRGDS PGSQRTSKQK ENSTTRP00000011066/1-1084 NEQAISLNSV ---------- --RGVGNRSP RETYLSRGDS PGSQRTSYQK bmy_19387T0/1-1251 DEQAISLNSV ---------- --RGVGNRSP RETYLSRGDS PGSQRTSYQK BACU010616/1-196 DEQAISLNSV ---------- --RGVGNRSP RETYLSRGDS PGSQRTSYQK 201 250 ENSP00000378431/1-1228 SNFETTRGK- ---------- ---------- ---------- ---------- ENSBTAP00000044864/1-1080 PSFETTRGK- ---------- ---------- ---------- ---------- ENSTTRP00000011066/1-1084 SSFETTRGK- ---------- ---------- ---------- ---------- bmy_19387T0/1-1251 SSFETTRGKI NTSFFQYMLL HKSNSVITIK ENPKCSLLLG VFGPHGKLNT BACU010616/1-196 SSFETTRGK- ---------- ---------- ---------- ---------- 251 300 ENSP00000378431/1-1228 ---------- ---------- ---------- --NWCAYVHT RLSPTVILDN ENSBTAP00000044864/1-1080 ---------- ---------- ---------- --NWCAYVHT RLSPTVILDN ENSTTRP00000011066/1-1084 ---------- ---------- ---------- --NWCAYVHT RLSPTVILDN bmy_19387T0/1-1251 SKKLLSVRHN HSGKYPGYFK ARYQVFNVSD TQNWCAYVHT RLSPTVILDN BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000378431/1-1228 QVTYVPGGKG PCGWTGGSCP QRSQKISNPV YRMQHKIVTS LDWRCCPGYS ENSBTAP00000044864/1-1080 QVTYVPSGRG PCGWTSGPCP QRSQKIPNSV YRMQHKIVTS LEWKCCPGFS ENSTTRP00000011066/1-1084 QVTYVPAGRG PCGWTSGSCP QRSQKISNPV YRMQHKIVTS LEWKCCPGFS bmy_19387T0/1-1251 QVTYVPNGRG PCGWTSGSCP QRSQKISNPV YRMQHKIVTS LEWKCCPGFS BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000378431/1-1228 GPKCQL---- ---------- ---RAQEQQS LIHTNQAESH TAVGRGVAEQ ENSBTAP00000044864/1-1080 GPKCQL---- ---------- ---KAQEQQQ LIHSKQAESH AAVGRGTLEQ ENSTTRP00000011066/1-1084 GPKCQL---- ---------- ---EAQEQQQ LIHSNQAESH AAGGRGMPEQ bmy_19387T0/1-1251 GPKCQLEVFI SNLLIFSTCF PNAKPQQQQQ LIHSNQAESH AAGGRGTPXQ BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000378431/1-1228 QQQQGCGDPE VMQKMTDQVN YQAMKLTLLQ KKIDNISLTV NDVRNTYSSL ENSBTAP00000044864/1-1080 QPQD-CGDPA VTQKMTDQMN YQAVKLALLQ KKIDNISLAV SDVRSTYSSL ENSTTRP00000011066/1-1084 QQQD-CGDPA VTQKMTDQMN YQAMKLTLLQ KKIDNISLAV SDIKNTYSSL bmy_19387T0/1-1251 QQD--CGDPA VTQKMTDQLN YQAMKLTLLQ KKIDNISSAV SDIRNTSSSL BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000378431/1-1228 EGKVSEDKSR EFQSLLKGLK SKSINVLIRD IVREQFKIFQ NDMQETVAQL ENSBTAP00000044864/1-1080 EEKINEDKAG EFKSFLKGLK SKSINDLVKE IVREQFKIFQ NDIEETVAQL ENSTTRP00000011066/1-1084 EGKISEDKGR EFQSFLKGLK SKSINDLVKD IVREQFKIFQ NDMQETIVQL bmy_19387T0/1-1251 EGKISEEKGR EFQSFLKGLK SKSINDLVKD IVREQLKIFQ NDMQETIVQL BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000378431/1-1228 FKTVSSLSED LESTRQIIQK VNESVVSIAA QQKFVLVQEN RPTLTDIVEL ENSBTAP00000044864/1-1080 FKTVSTVSKE LENVRQIIQQ VNESVISVAV QQKSVLMQEN RPTSIDILDL ENSTTRP00000011066/1-1084 FKTVSTLSED LENTRQIIRQ VNETVVSAAV QQKSVLMQEN RPTSTDILDL bmy_19387T0/1-1251 FKTVSALSED LENTRQIIRQ VNETVVSVAV QQKSXLMQEN RPTSTDILDL BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000378431/1-1228 RNHIVNVRQE MTLTCEKPIK ELEVKQTHLE GALEQEHSRS ILYYESLNKT ENSBTAP00000044864/1-1080 KDHIVNIRQE MTLMCEKPVK ELEAKQTRLE DALEQERSSR ILYYESLNKT ENSTTRP00000011066/1-1084 KNRIVNVRQE MTLTCEKPIK ELEAKQTHLE GALEQERSRS ILYHESLNKT bmy_19387T0/1-1251 KNRIVNVRQE MTFTCEKPIK ELEAKQTHLE GALEQERSRS ILYYESLNKT BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000378431/1-1228 LSKLKEVHEQ LLSTEQVSDQ KNAPAAESVS NNVTEYMSTL HENIKKQSLM ENSBTAP00000044864/1-1080 LSKMKEVQEH LLSTEQVSNQ KTVPIPVSVS NNFTEYVSTL HQNIKKQGLM ENSTTRP00000011066/1-1084 LSKMKDMQEH LLSTEQVSNQ KSVPAAGSVS NNVTEYMSTL HETVKKQGLM bmy_19387T0/1-1251 LSKMKDVQEH LLSTEQVSNQ KSVPAAESVS NNVTEYMSTL HGTIKKQGLM BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000378431/1-1228 MLQMFEDLHI QESKINNLTV SLEMEKESLR GECEDMLSKC RNDFKFQLKD ENSBTAP00000044864/1-1080 LLQISDDLHA QDSKINNLTL ALEMEKESVR EECEDMLSKY RDGFKVQIKD ENSTTRP00000011066/1-1084 LLRMFDDLHT QDSKINNLTL ALEMEKESVR EECEHMLSKC RDDFKFQIKD bmy_19387T0/1-1251 LLHMFDDLHT QDSKINNLTL ALEMEKESVR EECEDMLSKC RDDFKFQIKD BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000378431/1-1228 TEENLHVLNQ TLAEVLFPMD NKMDKMSEQL NDLTYDMEIL QPLLEQGASL ENSBTAP00000044864/1-1080 TEENLQVLNQ TLIEFLFPMD NKMDKMNEQL NDLTYDMEIL QPLLEQGASL ENSTTRP00000011066/1-1084 TEENLQVLNQ TLVEVLFPMD TKMDKMNEQL NDLTYDMEIL QPLLEQGASF bmy_19387T0/1-1251 TEENLQVLNQ TLVEVLFPMD NKMDKMNEQL NDLTYDMEIL QPLLEQGAPF BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000378431/1-1228 RQTMTYEQPK EAIVIRKKIE NLTSAVNSLN FIIKELTKRH NLLRNEVQGR ENSBTAP00000044864/1-1080 RETMTYEQPK EVVATKKKVE SLTSAVNSLN VLTKELTRRY NLLRNEVQSR ENSTTRP00000011066/1-1084 RETMTYEQPK EVVATKKKVE NLMTAVSSLN LLIKELTKRY NLLRNEVQSR bmy_19387T0/1-1251 RETMTYEQPK DIVATKKKVE NLITAVNSLN LLIKELTKRY NLLRNEVQSR BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000378431/1-1228 DDALERRINE YALEMEDGLN KTMTIINNAI DFIQDNYALK ETLSTIKDNS ENSBTAP00000044864/1-1080 GDALERRIDE HALEMEDGLN KTITIVNDAI DFIQDNYVLK ETLNIIKYNP ENSTTRP00000011066/1-1084 GDSLDRRINE HALEMEDGLN KTITIINNAI DFIQDNYMLK ETLDTTKYNP bmy_19387T0/1-1251 GDSLDRRINE HALEMEDGLN KTITIINNAI DFIQDNYMLK ETLNTTKYNP BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000378431/1-1228 EIHHKCTSDM ETILTFIPQF HRLNDSIQTL VNDNQRYNFV LQVAKTLAGI ENSBTAP00000044864/1-1080 EIHHKCTQNM DTILTFISQF QHLNDSIQIL VNDSQRYNFV LQVAKALAYI ENSTTRP00000011066/1-1084 EVHHKCTQNM ETILTFISQF QRLNDSIEIL VNDNQKYNFV LQVAKALANI bmy_19387T0/1-1251 EVHHKCIQNM ETILTFISQF QRLNDSIEIL VNDNQRYNFV LQVAKALAYI BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000378431/1-1228 PRDEKLNQSN FQKMYQMFNE TTSQVRKYQQ NMSHLEEKLL LTTKISKNFE ENSBTAP00000044864/1-1080 PKDEKLRPSN FQKISKMFNE TSSQVIKFQQ NISHLEEKIL SATKISKNVE ENSTTRP00000011066/1-1084 PKDEKLSLSN FQKISQMINE TSSQVIKYQQ IMSHLEEKIL SATNISKNFE bmy_19387T0/1-1251 PKDEKLSLSN FQKISQMINE TSSQVIKYQQ NMSHLEEKIL SATKISNDFE BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000378431/1-1228 TRLQDIESKV TQTLIPYYIS VKKGSVVTNE RDQALQLQVL NSRFKALEAK ENSBTAP00000044864/1-1080 TRLQGIESKV TKMLTPYYVS LKKDSAATNE SNQALQLQVL NSRFKALEAK ENSTTRP00000011066/1-1084 TRLQGVESKV TKTLIPYYVS LKKGFVATNE RDQALQLQVL NSRFKALEAK bmy_19387T0/1-1251 TRLQGIESKV TKTLIPYYVS LKKGFVATNE RDQALQLQVL NSRFKALEAK BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000378431/1-1228 SIHLSINFFS LNKTLHEVLT MCHNASTSVS ELNATIPKWI KHSLPDIQLL ENSBTAP00000044864/1-1080 SIHLSINLSL INKTLYEVVT TCHDASRSIS ELNATIPKRI KDSLPNIQLL ENSTTRP00000011066/1-1084 SIHLSINFSL LNKTLYEALT ICHDASTSIS ELNATIPK-I KGSIPDTQLL bmy_19387T0/1-1251 SIHLSINFSL LNKTLYEALT ICHDASTSIS ELNATIPKRI KGSLPDIQLL BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000378431/1-1228 QKGLTEFVEP IIQIKTQAAL SNLTCCIDRS LPGSLANVVK SQKQVKSLPK ENSBTAP00000044864/1-1080 QTSLAEYVES VIEIKTQIAL SNLTWYINQS LSSSLANIVK SQKQIKASLK ENSTTRP00000011066/1-1084 QKGLTEFVES VIEIKTQIAL SNLTRYINQS LSGSLANIVK SQKQIKPLLK bmy_19387T0/1-1251 QKGLTEFVES VIEMKTQIAL SNLTRYINQS LSGSLANIVK SQKQIKPLLK BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000378431/1-1228 KINALKKPTV NLTTVLIGRT QRNTDNIIYP ---------- ---------- ENSBTAP00000044864/1-1080 KPNTLKT-TV NLTTVQIGRA QRNTDNILLP ---------- ---------- ENSTTRP00000011066/1-1084 KPNTLKKPTV NLTTVLMGRT QRNTDNILLP ---------- ---------- bmy_19387T0/1-1251 KPNTLKKPTA NVTTVLMGRT QRNTDSILLP ERVWLLALQE ELNPELNCCN BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000378431/1-1228 ---------- ----EEYSSC SRHPCQNGGT CINGRTSFTC ACRHPFTGDN ENSBTAP00000044864/1-1080 ---------- --VTEEYSYC SRSPCQNGGT CINARTSFIC ACRHPFTGDN ENSTTRP00000011066/1-1084 ---------- ----EEYSDC SRSPCQNGGT CINGRTSFIC ACRHPFTGDN bmy_19387T0/1-1251 DVSSMAEDAS SALTEEYSDC SRSPCQNGGT CINGRTSFIC ACRHPFTGDN BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000378431/1-1228 CTIKLVEENA LAPDFSKGSY RYAPMVAFFA SHTYGMTIPG PILFNNLDVN ENSBTAP00000044864/1-1080 CTVKVAGENA LAP------- ---------- ---------- ---------- ENSTTRP00000011066/1-1084 CTVKVVEENA LAPDFSKGSY RYAPMVAFFA SHTYGMTTPG PILFNNLDVN bmy_19387T0/1-1251 CTVKVVEENA LAPDFSKGSY RYAPMVAFFA SHTYGMTTPG PILFNNLDVN BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000378431/1-1228 YGASYTPRTG KFRIPYLGVY VFKYTIESFS AHISGFLVVD GIDKLAFESE ENSBTAP00000044864/1-1080 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011066/1-1084 YGASYTPRTG KFRIPYLGVY VFKYTIESFS AHISGFLVVD GVDKLAFESE bmy_19387T0/1-1251 YGASYTPRTG KFRIPYLGVN ---------- ---------- ---------- BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000378431/1-1228 NINSEIHCDR VLTGDALLEL NYGQEVWLRL AKGTIPAKFP PVTTFSGYLL ENSBTAP00000044864/1-1080 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011066/1-1084 SINGEICCDR VLTGDALLEL NYGQEVWLHL VKGTIPAKYP PATTFSGYLL bmy_19387T0/1-1251 ---------- ---------- ---------- ---------- -----ENQLL BACU010616/1-196 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000378431/1-1228 YRT ENSBTAP00000044864/1-1080 VHI ENSTTRP00000011066/1-1084 YRT bmy_19387T0/1-1251 FKI BACU010616/1-196 ---