KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:31 2014 Check: 00 .. Name: ENSP00000317955/1-1411 Len: 1422 Check: 8315 Weight: 1.00 Name: ENSBTAP00000044884/1-1188 Len: 1422 Check: 3032 Weight: 1.00 Name: ENSTTRP00000001345/1-1385 Len: 1422 Check: 1289 Weight: 1.00 Name: bmy_03598T0/1-1198 Len: 1422 Check: 1863 Weight: 1.00 Name: BACU000978/1-1239 Len: 1422 Check: 1651 Weight: 1.00 // 1 50 ENSP00000317955/1-1411 MLRRILQRTP GRVGSQGSDL DSSATPINTV DVNNESSSEG FICPQCMKSL ENSBTAP00000044884/1-1188 ---------- ---------- ---------- ---------G FICPQCMKSL ENSTTRP00000001345/1-1385 --------TP GRVGSQGSDL DSSSAPINTV DVNNESSSEG FICPQCMKSL bmy_03598T0/1-1198 ---------- ---------- ---------- ---------- ---------- BACU000978/1-1239 --------TP GRVGSQGSDL DSSSAPINTV DVNNESSSEG FICPQCMKSL 51 100 ENSP00000317955/1-1411 GSADELFKHY EAVHDAGNDS GHGGESNLAL KRDDVTLLRQ EVQDLQASLK ENSBTAP00000044884/1-1188 GSADELFKHY EAVHDAGNDS SHGGEA-LAL KRDDITLLRQ EVQDLQASLK ENSTTRP00000001345/1-1385 GSADELFKHY EAVHDAGNDS SHGGEA-LAL KRDDITLLRQ EVQDLQASLK bmy_03598T0/1-1198 ---------- ---------- ---------- ---------- ---------- BACU000978/1-1239 GSADELFKHY EAVHD----- ---------- ---------- ---------- 101 150 ENSP00000317955/1-1411 EEKWYSEELK KELEKYQGLQ QQEAKPDGLV TDSSAELQSL EQQLEEAQTE ENSBTAP00000044884/1-1188 EEKWYSEELK KELEKFQGLQ QQESKPDGLV ADSSAELQSL EQQLEEAQTE ENSTTRP00000001345/1-1385 EEKWYSXXXX XXXXXXXXXX XXDSKPDGLV TDSSAELQSL EQQLEEAQTE bmy_03598T0/1-1198 ---------- ---------- ---------- ---------- ---------- BACU000978/1-1239 ---------- ---------- ---------- ----AELQSL EQKLEEAQTE 151 200 ENSP00000317955/1-1411 NFNIKQMKDL FEQKAAQLAT EIADIKSKYD EERSLREAAE QKVTRLTEEL ENSBTAP00000044884/1-1188 NFNIKQMKDL FEQKAAQLAT EIADIKSKYD EERSLREAAE QQVTHLTEEL ENSTTRP00000001345/1-1385 NFNIKQMKDL FEQKAAQLAT EIADVKSKYD EERSLREAAE QKVTYLTEEL bmy_03598T0/1-1198 ------MKDL FEQKAAQLAT EIADIKSKYD EERSLREAAE QKVTHLTEEL BACU000978/1-1239 NFNIKQMKDL FEQKAAQLAT EIADIKSKYD EERSLREAAE QKVTHLTEEL 201 250 ENSP00000317955/1-1411 NKEATVIQDL KTELLQRPGI EDVAVLKKEL VQVQTLMDNM TLERERESEK ENSBTAP00000044884/1-1188 NKEAAVIQDL KTELLQRPGI EDVAVLKKEL VQVQTLMDNM TLERERESEK ENSTTRP00000001345/1-1385 NKGATIIQDL KTELLQRPGI EDVAVLKKEL VQVQTLMDNM TLERERESEK bmy_03598T0/1-1198 NXGATVIHDL KSELLQRPGI EDVAVLKKEL VQVQTLMDNM TLERERESEK BACU000978/1-1239 NKGATIIHDL KTELLQRPGI EDVAVLKKEL VQVQTLMDNM TLERERESEK 251 300 ENSP00000317955/1-1411 LKDECKKLQS QYASSEATIS QLRSELAKGP QEVAVYVQEL QKLKSSVNEL ENSBTAP00000044884/1-1188 LKDECKKLQT EYTNSEAVIS QLRSELAKGP QEVAVYVQEL QKLKSSVNEL ENSTTRP00000001345/1-1385 LKDECKKLQA EHAHSQAIID QLRSELAKGP QEVAVYVQEL QKLKSSVNEL bmy_03598T0/1-1198 LKDECKKLQA EHAHSQATIN QLRSELAKGP QEVAVYVQEL QKLKSSVNEL BACU000978/1-1239 LKDECKKLQA EHAHSQATVN QLRSELAKGP QEVAVYVQEL QKLKSSVNEL 301 350 ENSP00000317955/1-1411 TQKNQTLTEN LLKKEQDYTK LEEKHNEESV SKKNIQATLH QKDLDCQQLQ ENSBTAP00000044884/1-1188 TQKNQNLTEK LQKKELDYTQ LEEKHNEECM SKKSIQASLH QKDLDCQQLQ ENSTTRP00000001345/1-1385 TQKNQNLTEK LQKKELDYTQ LEEKHNEECM SRKNIQASLH QKDLDCQQLQ bmy_03598T0/1-1198 TQKNQNLTEK XQKKELDYTQ LEEKHNEECM SKKNIQASLH QKDLDCQQLQ BACU000978/1-1239 TQKNQNLTEK LQKKELDYTQ LEEKHNEECM SKKNIQASLH QKDLDCQQLQ 351 400 ENSP00000317955/1-1411 SRLSASETSL HRIHVELSEK GEATQKLKEE LSEVETKYQH LKAEFKQLQQ ENSBTAP00000044884/1-1188 SRLSASETSL QRIQAELGEK GEATQKLKEE LSEVETKYQH LKAEFKQLQQ ENSTTRP00000001345/1-1385 SRLSASETSL QRIQAELGEK GEATQKLKEE LSEVETKYQH LKAEFKQLQQ bmy_03598T0/1-1198 SRLSASETSL QRIQAELGEK GEATQKLKEE LSEVETKYQH LKAEFKQLQQ BACU000978/1-1239 SRLSASETSL QRIQAELGEK GEATQKLKEE LSEVETKYQH LKAEFKQLQQ 401 450 ENSP00000317955/1-1411 QREEKEQHGL QLQSEINQLH SKLLETER-- QLGEAHGRLK EQRQLSSEKL ENSBTAP00000044884/1-1188 QREEKDQHGL QLQSEINQLH SKLLETERLY SLKFSTKMYK EGYSSASGRL ENSTTRP00000001345/1-1385 QREEKEQHGL QLQSEINQLH SKLLETER-- QLGEAHGRLK EQRQLSSEKL bmy_03598T0/1-1198 QREEKEQHGL QLQSEINQLH SKLLETER-- QLGEAHGRLK EQRQLSSEKL BACU000978/1-1239 QREEKEQHGL QLQSEINQLH SKLLETER-- QLGEAHGRLK EQRQLSSEKL 451 500 ENSP00000317955/1-1411 MDKEQQVADL QLKLSRLEEQ LKEKVTNSTE LQHQLDKTKQ QHQEQQALQQ ENSBTAP00000044884/1-1188 NPWGDPVSLL KRSLS---TQ LKEKVTNSTE LQHQLDKTKQ QHQEQQALQQ ENSTTRP00000001345/1-1385 MDKEQQVADL QLKLSRLEEE LKEKVTNSTE LQHQLDKTKQ QHQEQQALQQ bmy_03598T0/1-1198 MDKEQQVADL QLKLSRLEEE LKEKVTNSTE LQHQLDKTKQ QHQEQQALQQ BACU000978/1-1239 MDKEQQVADL QLKLSRLEEE LKEKVTNSTE LQHQLDKTKQ QHQEQQALQQ 501 550 ENSP00000317955/1-1411 STTAKLREA- -------QND LEQVLRQIGD KDQKIQNLEA LLQKSKENIS ENSBTAP00000044884/1-1188 STTAKLREA- -------QND LEQVLRQIGD KDQKIQNLEA LLQKSKENIS ENSTTRP00000001345/1-1385 STTAKLREA- -------QND LEQVLRQIGD KDQKIQNLEA LLQKSKENIS bmy_03598T0/1-1198 STTAKLREAQ VVVFNSLQND LEQVLRQIGD KDQKIQNLEA LLQKSKENIS BACU000978/1-1239 STTAKLREA- -------QND LEQVLRQIGD KDQKIQNLEA LLQKSKENIS 551 600 ENSP00000317955/1-1411 LLEKEREDLY AKIQAGEGET AVLNQLQEKN HTLQEQVTQL TEKLKNQSES ENSBTAP00000044884/1-1188 LLEKEREDLY AKIQAGEGET AVLNQLQEKN HTLQEQVTQL TEKLKNQSES ENSTTRP00000001345/1-1385 LLEKEREDLY AKIQAGEGET AVLNQLQEKN HTLQEQVTQL TEKLKNQSES bmy_03598T0/1-1198 LLEKEREDLY AKIQAGEGET AVLNQLQEKN HTLQEHVTQL TEKLKNQSES BACU000978/1-1239 LLEKEREDLY AKIQAGEGET AVLNQLQEKN HTLQEHVTQL TEKLKNQSES 601 650 ENSP00000317955/1-1411 HKQAQENLHD QVQEQKAHLR AAQDRVLSLE TSVNELNSQL NESKEKVSQL ENSBTAP00000044884/1-1188 HKQAQENLHD QVQEQKAHLR AAQDRVLSLE SSINELNSQL NESKEKVSQL ENSTTRP00000001345/1-1385 HKQAQENLHD QVQEQKAHLR AAQDRVLSLE SSINELSSQL NESKEKVSQL bmy_03598T0/1-1198 HKQAQENLHD QVQEQKAHLR AAQDRVLSLE SSINELSSQL NESKEKVSQL BACU000978/1-1239 HKQAQENLHD QVQEQKAHLR AAQDRVLSLE SSINELSSQL NESKEKVSQL 651 700 ENSP00000317955/1-1411 DIQIKAKTEL LLSAEAAKTA QRADLQNHLD TAQNALQDKQ QELNKITTQL ENSBTAP00000044884/1-1188 DIQVKAKTEL LLSAEAAKTA QRADLQNHLD TAQNALQDKQ QELNKITTQL ENSTTRP00000001345/1-1385 DIQIKAKTEL LLSAEAAKTA QRADLQNHLD TAQNALQDKQ QELNKITTQL bmy_03598T0/1-1198 DIQIKAKTEL LLSAEAAKTA QRADLQNHLD TAQNALQDKQ QELNKITTQL BACU000978/1-1239 DIQIKAKTEL LLSAEAAKTA QRADLQNHLD TAQNALQDKQ QELNKITTQL 701 750 ENSP00000317955/1-1411 DQVTAKLQDK QEHCSQLESH LKEYKEKYLS LEQKTEELEG QIKKLEADSL ENSBTAP00000044884/1-1188 DQVTTKLQDK QEHCSQLESH LKEYKEKHLS LEQKTEELEG QIKKLEADML ENSTTRP00000001345/1-1385 DQVTTKLQDK QEHCSQLESH LKEYKEKHLS LEQKTEELEC QIKKLEADTL bmy_03598T0/1-1198 DQVTTKLQDK QEHCSQLESH LKEYKEKYLS LEQKTEELEG QIKKLEADTL BACU000978/1-1239 DQVTTKLQDK QEHCSQLESH LKEYKEKYLS LEQKTEELEG QIKKLEADTL 751 800 ENSP00000317955/1-1411 EVKASKEQAL QDLQQQRQLN TDLELRATEL SKQLEMEKEI VSSTRLDLQK ENSBTAP00000044884/1-1188 EVKASKEQAL QGLQQQRQLN TDLELRATEL SKQLEMEKET VSNTKLDLQK ENSTTRP00000001345/1-1385 EVKANKEQAL QDLQEQRQLN TDLELRATEL SKQLEKEKET VSNTKLDLQK bmy_03598T0/1-1198 EVKASKEQAL QDLQEQRQLN TDLELRATEL SKQLEKEKET VSNTKLDLQK BACU000978/1-1239 EVKASKEQAL QDLQEQRQLN TDLELRATEL SKQLEKEKET VSNTKLDLQK 801 850 ENSP00000317955/1-1411 KSEALESIKQ KLTKQEEEKK ILKQDFETLS QETKIQHEEL NNRIQTTVTE ENSBTAP00000044884/1-1188 KSEALENTKQ MLTKQEEEKT MLKQEIENLS QDAKMQHKEL NDRIQTAVTE ENSTTRP00000001345/1-1385 KSEALENIKQ MLNKQEEEKK VLKQEIENLS QDAKMQHKEL NNKVHTAVTE bmy_03598T0/1-1198 KSEALENIKQ MLTKQEEEKK VLKQEMENLS QDAKMQHKEL NNKIHTAVTE BACU000978/1-1239 KSEALENIKQ MLTKQEEEKK VLKQEIENLS QDAKMQHKEL NNKIHTAVTE 851 900 ENSP00000317955/1-1411 LQKVKMEKEA LMTELSTVKD KLSKVSDSLK NSKSEFEKEN QKGKAAILDL ENSBTAP00000044884/1-1188 LQKVKVEKDS LVAELSAAKE KLSKVSDCLK NSQSEFEKEN QKGKAVILDL ENSTTRP00000001345/1-1385 LQKVKMEKET LVAELSAAKE KLSEVSDSLK NSKSEFEKEN QKGKAAVLDL bmy_03598T0/1-1198 LQKVKMEKET LVAELSAAKE KLSKVSDSLK NSKSEFEKEN QKGKAAVLDL BACU000978/1-1239 LQKVKIEKET LVAELSAAKE KLSKVSDSLK NSKSEFEKEN QKGKAAVLDL 901 950 ENSP00000317955/1-1411 EKTCKELKHQ LQVQMENTLK EQKELKKSLE KEKEASHQLK LELNSMQEQL ENSBTAP00000044884/1-1188 EKTCKELKHQ LQVQTESLHK EQNEMKKSLE KEKETSHQLK LELSSMQGQV ENSTTRP00000001345/1-1385 EKTCKELKQQ LQVQTESTHK EQNELKKSLE KEKETSHQLK LELSSMQGQV bmy_03598T0/1-1198 EKTCKELKQQ LQVQTESTHK EQNELKKSLE KEKE------ ---------- BACU000978/1-1239 EKTCKELKQQ LQVQTESTHK EQNELKKSLE KEKETSHQLK LELSSMQGQV 951 1000 ENSP00000317955/1-1411 IQAQNTLKQN EKEEQQLQGN INELKQSSEQ KKKQIEALQG ELKIAVLQKT ENSBTAP00000044884/1-1188 IQAQDSLKQK EKEEQQLQSN INELKQLTEQ KKKQIETLQG EVKIAVSQKT ENSTTRP00000001345/1-1385 IQAQNSLTQK EKEEQQLQGN INELKQLTEQ KKKQIEALQG EVKIAVSQKT bmy_03598T0/1-1198 ---------- ---------- ---------- ---------- ---------T BACU000978/1-1239 IQAQNSLTQK EKEEQQLQSN INELKQLTEQ KKKQIEALQG EVKIAVSQKT 1001 1050 ENSP00000317955/1-1411 ELENKLQQQL TQAAQELAAE KEKISVLQNN YEKSQETFKQ LQSDFYGRES ENSBTAP00000044884/1-1188 ELENKLQQQS MQAAQELAAE KQKISVLQNT YEKSQENLKQ LQSDFYGKES ENSTTRP00000001345/1-1385 ELENKLQQQS TQAAQELAAE KQKISLLQNT YEKSQESLKQ LQSDFYGKES bmy_03598T0/1-1198 ELENKLQQQS TQAAQELAAE KQKISVLQNT YEKSQESLKQ LQSDFYGKES BACU000978/1-1239 ELENKLQQQS TQAAQELAAE KQKISVLQNT YEKSQESLKQ LQSDFYGKES 1051 1100 ENSP00000317955/1-1411 ELLATRQDLK SVEEKLSLAQ EDLISNRNQI GNQNKLIQEL KTAKATLEQD ENSBTAP00000044884/1-1188 ELLATRQDLK SIEEKLSLAQ EDLISNRNQI GNQNKLIQEL KTTKTTLEQD ENSTTRP00000001345/1-1385 ELLATRQDLK -VEEKLSLAQ D--ISNRNQI GNQNKLIQEL KTTKATLEQD bmy_03598T0/1-1198 ELLATRQDLK SVEEKLSLAQ EDLISNRNQI GNQNKLIQEL KTTKATLEQD BACU000978/1-1239 ELLATRQDLK ---------- ---------- ---------- ---------- 1101 1150 ENSP00000317955/1-1411 SAKKEQQLQE RCKALQDIQK EKSLKEKELV NEKSKLAEIE EIKCRQEKEI ENSBTAP00000044884/1-1188 LAKKEQQLKE QNKALQDMQK EKSLKEKELV NEKSKLAETE EIKCRQEKEI ENSTTRP00000001345/1-1385 LAKKEQQ--- ---------- --SLKEKELV NEKCKLAEIE EIKCRQEKEI bmy_03598T0/1-1198 LAKKEQQLKE QSKALQDIQK EKSLKEKELV NEKCKLAEIE EIKCRQEKEI BACU000978/1-1239 ---------- ---------- --SLKEKELV NEKCKLAEIE EIKCRQEKEI 1151 1200 ENSP00000317955/1-1411 TKLNEELKSH KLESIKEITN LKDAKQLLIQ QKLELQGKAD SLKAAVEQEK ENSBTAP00000044884/1-1188 AKLSEELKSH KQESIKEITN LKDAKQLLIQ QKLELQGKVD SLKATLEQEK ENSTTRP00000001345/1-1385 AKLSEELKSH KQESIKEVTN LKDAKQLLIQ QKLELQGKVD SLKATLEQEK bmy_03598T0/1-1198 AKLSEELKSH KQESIKEVTN LKDAKQLLIQ QKLELQGKVD SLKATLEQEK BACU000978/1-1239 AKLSEELKSH KQESIKEVTN LKDAKQLLIQ QKLELQGKVD SLKATLEQEK 1201 1250 ENSP00000317955/1-1411 RNQQILKDQV KKEEEELKKE FIEKEAKLHS EIKEKEVGMK KHEENEAKLT ENSBTAP00000044884/1-1188 KTQQMLKEQM KKEEDELKKE FMEKEAKLHS EIKEKE---- ---------- ENSTTRP00000001345/1-1385 KAQQMLKEQM KKEEDELKKE FMEKEAKLLS EIKEKEVGMK QHEENETKLT bmy_03598T0/1-1198 KTQQMLKEQM KKEEDELKKE FMEKEAKLLS EIKEKEVGMK QHEENEAKLT BACU000978/1-1239 KTQQMLKEQM KKEEDELKKE FMEKEAKLLS EIKEKEVGMK QHEENEAKLT 1251 1300 ENSP00000317955/1-1411 MQITALNENL GTVKKEWQSS QRRVSELEKQ TDDLRGEIAV LEATVQNNQD ENSBTAP00000044884/1-1188 ---------- ---KKK---- ---------- ---------- ---------- ENSTTRP00000001345/1-1385 MQITALNENL GTIKKEWQSS QRRVSELEKQ TDDLRGEIAV LEATVQNNQD bmy_03598T0/1-1198 MQITALNENL GTIKKEWQSS QRRVSELEKQ TDDLRGEIAV LEATVQNNQD BACU000978/1-1239 MQITALNENL GTIKKEWQSS QRRVSELEKQ TDDLRGEIAV LEATVQNNQD 1301 1350 ENSP00000317955/1-1411 ERRALL-ERC LKGEGEIEKL QTKVLELQRK LDNTTAAVQE LGRENQSLQI ENSBTAP00000044884/1-1188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001345/1-1385 ERRALLVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI bmy_03598T0/1-1198 ERRALL-ERC LKGEGEIEKL QTKVLELQRK LDNTTAAVQE LGRENQSLQI BACU000978/1-1239 ERRALL-ERC LKGEGEIEKL QTKVLELQRK LDNTTAAVQE LGRENQSLQ- 1351 1400 ENSP00000317955/1-1411 KHTQALNRKW AEDNEVQNCM ACGKGFSVTV RRHHCRQCGN IFCAECSAKN ENSBTAP00000044884/1-1188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001345/1-1385 KHTQALNRKW AEDNEVQNCM ACGKGFSVTV RRHHCRQCGN IFCAECSAKN bmy_03598T0/1-1198 KHTQALNRKW AEDNEVQNCM ACGKGFSVTV RRHHCRQCGN IFCAECSAKN BACU000978/1-1239 ---------- ---------- ---------- --HHCRQCGN IFCAECSAKN 1401 1450 ENSP00000317955/1-1411 ALTPSSKKPV RVCDACFNDL QG ENSBTAP00000044884/1-1188 ---------- ---------- -- ENSTTRP00000001345/1-1385 ALTPSSKKPV RVCDACFNDL QG bmy_03598T0/1-1198 ALTPSSKKPV RVCDACFNDL QG BACU000978/1-1239 ALTPSSKKPV RVCDACFNDL QG