KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:32 2014 Check: 00 .. Name: ENSTTRP00000009636/1-917 Len: 1193 Check: 3513 Weight: 1.00 Name: ENSP00000293892/1-1053 Len: 1193 Check: 4721 Weight: 1.00 Name: ENSBTAP00000044897/1-646 Len: 1193 Check: 649 Weight: 1.00 Name: bmy_01894T0/1-836 Len: 1193 Check: 3814 Weight: 1.00 Name: BACU009243/1-543 Len: 1193 Check: 8479 Weight: 1.00 // 1 50 ENSTTRP00000009636/1-917 MEVSGDRGAP TLHHTCAPKL S-SPRPAACD PGAFA----- --RMTSGHHT ENSP00000293892/1-1053 MEVSGDPGIP ALHRLCTRAL SASPGPTALG PSTFLPWDVS ARMTSARRRT ENSBTAP00000044897/1-646 ---------- ---------- ---------- ---------- --RTTCRHHT bmy_01894T0/1-836 ---------- ---------- ---------- ---------- ---MTSGHRT BACU009243/1-543 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009636/1-917 AMGPRA---- ---------- ---------- ---------- --------HV ENSP00000293892/1-1053 DVGPRVAFTY PCTQLSPTRA HRHLPVHTVT YPCTQLSPTR AHSCHLPMHT ENSBTAP00000044897/1-646 AMGPRA---- ---------- ---------- ---------- ---------- bmy_01894T0/1-836 AMGPRA---- ---------- ---------- ---------- ---------- BACU009243/1-543 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009636/1-917 DTGRHAYRPS HRCACFQTTV TCPVHIVTEY TLPPAGTQVY CVIMHAPTHV ENSP00000293892/1-1053 VTYPCTPSPT RAHSCHLPVH TVTYTCTLSP THACLHASTV SCLCCIPVHT ENSBTAP00000044897/1-646 ---------- ---------- ---------- ---------- ---------- bmy_01894T0/1-836 ---------- ---------- ---------- ---------- ---------- BACU009243/1-543 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000009636/1-917 PHYLCIPPPC TYHGHRHTAS DSRVYRTHCH VHLVTQHAQT QAAHR----- ENSP00000293892/1-1053 VTYPCTLSPT CAHCHLHMRA RTHPQPHACA VYLCILSPTR AHCHLHVHTV ENSBTAP00000044897/1-646 ---------- ---------- ---------- ---------- ---------- bmy_01894T0/1-836 ---------- ---------- ---------- ---------- ---------- BACU009243/1-543 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000009636/1-917 ---------- ---------- ---------- --PAPWSSKD S--------- ENSP00000293892/1-1053 TYMCVPACTH SITPVHAPPD TSCAWAQAVH RWPVLWGSRS SSMSSGLKQT ENSBTAP00000044897/1-646 ---------- ---------- ---------- ---------- ---------- bmy_01894T0/1-836 ---------- ---------- ---------- ---------- ---------- BACU009243/1-543 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000009636/1-917 -VLGVTGPPG TQGALD---- TAPTQMLMAC SVPSALVSPG LTFLVSLTAH ENSP00000293892/1-1053 PMVGVTGPPW DPDAPA---- PAPAGTLTAH LIPGALQSSG LTLLLSLAAH ENSBTAP00000044897/1-646 ---------- ---------- ---------- ---GALVSPG LALLVSLTAH bmy_01894T0/1-836 ------GPPG TQGALGRPTL DAPTQMLMAC SVPGALVSPG LAFLVSLTAH BACU009243/1-543 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000009636/1-917 CSHPQAEGAT QGGLDVSRAN MWASANTSLL QGFWCQPASQ LARDQLAALI ENSP00000293892/1-1053 CSGPQAKVLS PGGLDASGAN LWASANCSLL QGFWCQPASQ LPRDQLSALI ENSBTAP00000044897/1-646 CSHPQAEGAS QGGLDASRAD LWARASASLL QGFWCQPASQ LSRDQLAALI bmy_01894T0/1-836 CSHPQAEGAT QGGLDVSRAN LWASANTSLL QGFWCQPASQ LSRDQLAALI BACU009243/1-543 MQSPEAH--- ---------- ---SANTSLL QGFWCQPASQ LSRDQLAALI 351 400 ENSTTRP00000009636/1-917 RRMETQHVLL GAWQVSGGPC R-RRTGGRGD GGEVGGALRG QRERGGKPPA ENSP00000293892/1-1053 QRLALLQVPL QAWQVSGKEC RGAGTGGRGD DPTCGKRGRE VGGDWGLRPP ENSBTAP00000044897/1-646 RRMATQHVLL RAW------- ---------- ---------- ---------- bmy_01894T0/1-836 RKMETQHVLL GAW------- ---------- ---------- ---------- BACU009243/1-543 RRMETQHVLL GAW------- ---------- ---------- ---------- 401 450 ENSTTRP00000009636/1-917 ARKRHAACP- ---------- --ALSCLANL AARQGLQGDF ELHPTNLLLL ENSP00000293892/1-1053 QRGRAPTGCH GESRVTRERR SAQLSCLANL ASRCGLQDDF TLHPPNLLLF ENSBTAP00000044897/1-646 ---------- ---------- --QLSCLANL AARQGLQGDF ELHPPDLLLF bmy_01894T0/1-836 ---------- ---------- --QLSCLANL ATQQGLQGDF ELHPTNLLLF BACU009243/1-543 ---------- ---------- --QLSCLANL AAQQGLQGDF ELHPTNLLLF 451 500 ENSTTRP00000009636/1-917 YE-------- ---------- ---------- ---------- ---LTQVREA ENSP00000293892/1-1053 YN-------- ---------- ---------- ---------- ---LSQVREA ENSBTAP00000044897/1-646 YN-------- ---------- ---------- ---------- ---LTQVKEA bmy_01894T0/1-836 YERVPLPAQR PAAWPERAPQ GHLSHSEAPQ LAPLLTAPQP SHSLTQVREA BACU009243/1-543 YD-------- ---------- ---------- ---------- ---LTQVREA 501 550 ENSTTRP00000009636/1-917 DCQAFVRRTA QGNTGLLANL PDQRATLXXX XXXXXXXXXX XXXXXXXXXX ENSP00000293892/1-1053 DCRAFIRRAA QGDVELLSHL PDQRVALWRA AVACLVGAGW GWARCIGGSL ENSBTAP00000044897/1-646 DCRAFIRRAA QGDTELLANL PDQRTALRHR ALVCL----- ------GGPQ bmy_01894T0/1-836 DCQALVRRAA QGNTGLLANL PDQRATLRHR ALACL----- ------GGPR BACU009243/1-543 DCQAFVRRAA QGNTGLLANL PDQRATLQHR ALACL----- ------GGLR 551 600 ENSTTRP00000009636/1-917 X------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000293892/1-1053 PLGADLLALQ GVARLRLSAS DQQLLGALVC DMDASSIGAA DPHMLENLRR ENSBTAP00000044897/1-646 P--------- -----RLSAS DLLLLGVLVC DMDASSIVAA DPHVLQNLQH bmy_01894T0/1-836 P--------- -----SLSTS DLLLLGVLVC DMDASSIMAA DPHVLQNLQR BACU009243/1-543 P--------- -----SLSTS DLLLLGVLVC DMDASSIMAA DPHVLQNLQR 601 650 ENSTTRP00000009636/1-917 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000293892/1-1053 CPRLTAAQRI ALNSLLAGGK TSLGPPGSWT LEGLQALGPL ATYISPHLWA ENSBTAP00000044897/1-646 CPRLTAAQQA ALNRLLASGR TVLGPPSSWN LERLWALGRL ASYISPGLWM bmy_01894T0/1-836 CPQLMATQQA ALNRLLASGR TRLGPPGSWN LEGLQALGPL ATYISPSLWM BACU009243/1-543 CPQLMATQQA ALNRLLASGR TRLGP----- ---------- ---------- 651 700 ENSTTRP00000009636/1-917 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000293892/1-1053 QVQEAVGLGF FRSVVASCQV GRLGQREARC FVTSFLESKT KPVSSRPRLS ENSBTAP00000044897/1-646 QVKEAVGLDF FRSIVAACRA GQLRQRDARR FVTSFLEAKS KAVSSPSKRD bmy_01894T0/1-836 QVQEAVGLDF FGSIVATCWA GQLSQRDTRR FGTGFLEVKA KLVPSRPKWD BACU009243/1-543 -AHQAMGLDF FGSIVATCWA GQLSQRDTKR FGTGFLEVKA KLVPSRPKWD 701 750 ENSTTRP00000009636/1-917 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000293892/1-1053 T------GNI TAATLRDDLF LVHYDCAELE SCLDGCILRT NLDTLLQHLL ENSBTAP00000044897/1-646 TGRPCIRGSI TAATLHDDLF LMRYDCGQLE SCLGSSVLRA NLDPLLQHPL bmy_01894T0/1-836 TERPFIRGDI TAATLHDDLF LVRYDCVQLE SCLGSLVLRA NLDPLLQHPL BACU009243/1-543 TGRPFIRGDI TAAMLHDDLF LVRYDCVQLK SCLGSLVLRA NLDPLLQHPL 751 800 ENSTTRP00000009636/1-917 XXXXXXXXXX XXXXXYPGSV PEEQLQLIPS LAYLYSHAEI GQWHITSKDT ENSP00000293892/1-1053 PTECQHVVKA KLAQIYPQGL PEDQLRLITS LVYLYSRTEI GQWSITSQDT ENSBTAP00000044897/1-646 PAECQQVVKA KLARVYPGGV PEEQLRLIPS LLYLYSLSEI GQWHITSKDT bmy_01894T0/1-836 PAQCQQVVKA KLAQVYPGGV PEEQLRLIPS LAYLYSRAEI GQWHITSKDT BACU009243/1-543 PAQCQQVVKA KLAQVYPGGV PEEQLQLIPS LAYLYSRAEI GQWHITSKDT 801 850 ENSTTRP00000009636/1-917 VVALLAPDGA LENQTEVILQ KFLDHIGTIT SALLVANGGS RLCWMSPRQI ENSP00000293892/1-1053 VMALLASDVA LENQTEAVLQ KFLEHNGTVS GALLLAIGGT RLCWMSPHQI ENSBTAP00000044897/1-646 VVTLLAPDGA LENQTEAILQ KFLDHNGTVT GALLVAIGGS RLCWMSPRQI bmy_01894T0/1-836 VVALLAPDGA LENQTEAILQ KFLDHNGTIT SALLLAIGGS HLCWMSPRQI BACU009243/1-543 VMALLAPDGA LENNTEAILQ KFLDHNGTIT SALLLAIGGS HLCWMSPRQI 851 900 ENSTTRP00000009636/1-917 QAIRPLEFRL AGALDISSCP QSRKNVLYDK AREAFGTART VDAYYSFTPP ENSP00000293892/1-1053 QTIHPQELRL AGALDLSSCP QSRKDVLYTK AHETFGSSGT LAAYYRLMRP ENSBTAP00000044897/1-646 QDIRPSEFRL AGALDISSCP QTRKNVLFDK AREAFASAST SDTYYRFMRP bmy_01894T0/1-836 QAIRPLD--L AGALDISSCP QSRKNMFYDK AREAFGSART PHAYYSFTHP BACU009243/1-543 QAIRPLEFCL AGALDITSCP QSRKNVLCDK AREAFGSART AYAYYSFTNP 901 950 ENSTTRP00000009636/1-917 Y--------- ---------- LPLGGAPVEE LRHLPQANVS VDIDAFTSLN ENSP00000293892/1-1053 YLGGSPGGAQ PP------SP VPPGGAPVEE LRHLAHANIS MDIDTFTSLN ENSBTAP00000044897/1-646 Y--------- ---------- --LGGAPVEE LRHLAQANVS MDIYTFTNLN bmy_01894T0/1-836 PTSGTPPGSP APEAPPLAAA PPLGGAPVEE LRHLAQANVS VDVDTFTNLN BACU009243/1-543 H--------- ---------- --LGGTPVEE LRHLAQATVS VDIDTFTNLN 951 1000 ENSTTRP00000009636/1-917 TRVL------ ---------- ---------- ---------- ---------- ENSP00000293892/1-1053 PLEL------ ---------- ---------- ---------- ---------- ENSBTAP00000044897/1-646 PRVL------ ---------- ---------- ---------- ---------- bmy_01894T0/1-836 PRVLQVGPGA TRHGVGQGWP SRGCLGYGLQ APTPTPKSEV CRQCVLPGLT BACU009243/1-543 PRVL------ ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000009636/1-917 ---------- ---------- QSLSVGNVTT LLGQNMGDLQ KAHSHPTISS ENSP00000293892/1-1053 ---------- ---------- QSLDVGNVTA LLGHNVGDLQ KARSHPTVRA ENSBTAP00000044897/1-646 ---------- ---------- QSLTVGNVTT LLGPNVGDLQ KARSHPIISS bmy_01894T0/1-836 PALRPSIDPA HDPSDPSLPS QSLSVGNVTT LLGQNVGDLQ KAHSHPTISS BACU009243/1-543 ---------- ---------- QSLSVGNVTT LLGQNVGDLQ KAHSHPTISS 1051 1100 ENSTTRP00000009636/1-917 WLCSLNPSAL GELGLDTDPT GPTGLTHLTT GTPNTIPWMP HLV-----PT ENSP00000293892/1-1053 WLRSLNSSTL GQLGLDASPT SPTGPAHGTR GPPSTTHQVL HLVHTSGLPT ENSBTAP00000044897/1-646 WLRSLNRSAL SELGLDTDAT SPTSSAHSTT GTPSTTLWTR HQA-----PT bmy_01894T0/1-836 WLRSLNQSAL GELGLDTDPT GPTGLTHSTT GTPNTTPWTP HLV-----PT BACU009243/1-543 WLRSLNQSAL GELGLDTDPT GPTGLTHSTT GTPNTTPWTP HLV-----PT 1101 1150 ENSTTRP00000009636/1-917 SDRPWSTDPS S-----HLGY LPLAVALPSG LLWLLYW--- ---------- ENSP00000293892/1-1053 ND---AQAST SGSLWAPLGY LPLAMALPCS LLCLLHWGTC ILVSVDSVAS ENSBTAP00000044897/1-646 SE---GPGST ARSPPAPLGY LPLAVALTAG LLWLL----- ---------- bmy_01894T0/1-836 SHWPWSTDPS SGSPPAHLGY LPLSVALPSG LLWLLY---- ----CSTPGP BACU009243/1-543 SD-------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000009636/1-917 ------GTCP MASKDSTAPA PLAGKPGLVG GAGCLPRPRC LPH ENSP00000293892/1-1053 GWLGSQGSGA GKTEVLDSAG RPLGLTGQL- ---------- --- ENSBTAP00000044897/1-646 ---------- ---------- ---------- ---------- --- bmy_01894T0/1-836 SWNHSQGTCP VASKDSAAPA PLAGKPGL-- ---------- --- BACU009243/1-543 ---------- ---------- ---------- ---------- ---