KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:35 2014 Check: 00 .. Name: ENSP00000369907/1-474 Len: 512 Check: 5241 Weight: 1.00 Name: ENSTTRP00000001665/1-474 Len: 512 Check: 1991 Weight: 1.00 Name: ENSBTAP00000044966/1-477 Len: 512 Check: 3247 Weight: 1.00 Name: bmy_21475T0/1-449 Len: 512 Check: 8011 Weight: 1.00 Name: BACU006598/1-409 Len: 512 Check: 2454 Weight: 1.00 // 1 50 ENSP00000369907/1-474 ---MKTKCIC ELCSCGRHHC PHLPTKIYDK TEKPCLLSEY TENYPFYHSY ENSTTRP00000001665/1-474 ---MKRKCIC DLCSCGRHHC PHLPTKIYDK TEKPCLFSEY TKNYPLYRSY ENSBTAP00000044966/1-477 MAPTKGKCVC ELCSCGRHHC PHLPTKIYDK TEKPCLLSEY TENYPVYHSY bmy_21475T0/1-449 ---------- ---------- ---------- ---------- ---------- BACU006598/1-409 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000369907/1-474 LPRESFKPRR EYQKGPIPME GLTTSRRDFG PHKVAPVKVH QYDQFVPSEE ENSTTRP00000001665/1-474 LPRESFKPKL EYQKASAPME GLTTFRRDFG PHRVLPVKIH QPDPFVPSEE ENSBTAP00000044966/1-477 LPRESFKPKM DYQRACTPME GLTTSRRDFG PHKVLPVKIH QPNPFVPSEE bmy_21475T0/1-449 ---------- ---MGPPRRQ PRLQVRRDFG PHKVLPVKIH QPDPFVPSGE BACU006598/1-409 ---------- --------ME GLTTSRRDFG PHKVLPVKIH QPNPFVPSGE 101 150 ENSP00000369907/1-474 NMDLLTTYKK DYNPYPVCRV DPIKPRDSKY PCSDKMECLP TYK------- ENSTTRP00000001665/1-474 DMDLLTTYKQ DYNPYPVSRV DPIKPRDNKY PRGGKMECLP TYK------- ENSBTAP00000044966/1-477 NMDLQTTYKQ DYNPYPLCRV DPFKPRDSKY PCGDKMESLP TYK------- bmy_21475T0/1-449 TMDLLTSYKQ DYNPYPVSRV DPIKPRDSKY PCGDKMECLP TYKGTLLNGI BACU006598/1-409 NMDLLTSHKQ DYNPYPVSRV DPIKPRDSKY PCGDKMECLP TYK------- 151 200 ENSP00000369907/1-474 ---------- ---------- --------AD YLPWNQPRRE PLRLEHKYQP ENSTTRP00000001665/1-474 ---------- ---------- -------XXX XXXXXXXXXX XXXXXXXXSP ENSBTAP00000044966/1-477 ---------- ---------- --------AD YLPWNQPRRE LLRPPHHYRP bmy_21475T0/1-449 SFKEVLANYA HDTLALKGFY WWLFRHARAD YLPWNQPRRE LLRLPRNYRP BACU006598/1-409 ---------- ---------- --------AD YLPWNQPRRE MLRLPRNYRP 201 250 ENSP00000369907/1-474 ASVRFDNRTT HQDDYPIKGL VKTISCKPLA MPKLCNIPLE DVTNYKMSYV ENSTTRP00000001665/1-474 ASTKFDSRTT HQDDYSMKGL VNTKSCKPPA ALRLCNIPLE DLTDYKMSYV ENSBTAP00000044966/1-477 ASTKFDSRTT QQDDYSMKGL VNTRSCKPPA VPKLCNVPLE DLTNYKMSYV bmy_21475T0/1-449 ASTKFDSRTT HQDDYSMKGL VNTMSCKPPP ALKLCNIPLE DLTNYKMSYM BACU006598/1-409 ASTKFDSRTT HQDDYSMKGL VNTMSCKPPA ALKLCNIPLE DLTNYKMSYM 251 300 ENSP00000369907/1-474 AHPVEKRFVH EAEKFRPCEI PFESLTTQKQ SYRGLMGEPA KSLKPLARPP ENSTTRP00000001665/1-474 AHPMEKRYVY EPEKFKPCEI PFESLTTHNE SYRGLMGEPA KSLKPPERPS ENSBTAP00000044966/1-477 AHPLEKRFVH ESEKFRPCEI PFESLTTHKE SYRGLMGEPA KSLKPPARPY bmy_21475T0/1-449 AHPMEKRYVY EPEKFRPCEI PIESLTTHNE SYRGLMGEPA KSLKPPARPS BACU006598/1-409 AHPMEKRYVY EPEKFRPCEI PIESLTTHNE SYRGLMGEPA KSLKPSARPS 301 350 ENSP00000369907/1-474 GLDMPFCNTT EFRDKYQAWP MPRMFSKAPI TYVPPEDRMD LLTTVQAHYT ENSTTRP00000001665/1-474 VLDTPFSNTS EFRDKYQAWP TPRMFSKAPA TYVAPEEKMD LLTTVQAHYT ENSBTAP00000044966/1-477 GLDTPFSNTT EFRDKYQAWP TPQVFSKPPS MYVPPEEKMD LLTTVQTHYT bmy_21475T0/1-449 AXDTPFSNTT EFRDKYQAWP TPQMFSKAPA TFVAPEEKMD LLTTVRAHYT BACU006598/1-409 ALDTPFSNTT EFRDKYQAWP TPQMFSKAPA TFVAPEEKMD LLTTVRAHYT 351 400 ENSP00000369907/1-474 CPKGAPAQSC RPALQIKKCG RFEGSSTTKD DYKQWSSMRT EPVKPVPQLD ENSTTRP00000001665/1-474 YPKGAPAQSC RPVLSVKKGG RFESSTTTKE DFKQWVGVQT KPVKPVSQLK ENSBTAP00000044966/1-477 YPKGAPAESC RPALSVKKGG RFEGSTTTKE DYKQWASTRT EPAKPIPQLN bmy_21475T0/1-449 YPKGAPAQSY QPVLSVKKGG RFESSTTTKE DYKQWAGMQT EPVKPIPQLN BACU006598/1-409 YPKGAPAQSY RPVLSVKKGG RFESSTTTKE DYKQWASMQT KPVKPIPQLN 401 450 ENSP00000369907/1-474 LPTEPLDCLT TTRAHYVPHL PINTKSCKPH WSGPRGNVPV ESQTTYTISF ENSTTRP00000001665/1-474 RPTEPLDHLT TTRAHYVPCP PVTTKSCKPA WSGLRRNIPV EGQTTYTISF ENSBTAP00000044966/1-477 LPTEPLDCLT TTRAHYVPHL PMMTKSCKPV WSGPQGNIPV EGQTTYTISF bmy_21475T0/1-449 LPTEPLDCLT TTRAHYVPCP PITTKSCKPP WSGPRGDIPV EGQTTYTISF BACU006598/1-409 LPTEPLDCLT TTRAHYVPCP PITTKSCKPP WSGPRGDIPV EGHTTYTISF 451 500 ENSP00000369907/1-474 TPKEMGRCLA SYPEPPGYTF EEVDALGHRI YKPVSQAGSQ QSSHLSVDDS ENSTTRP00000001665/1-474 TPKKMS-CLA SYPEPPGYIF EKTDALGHRI YRPVSQTGSR PSSCLSVGDS ENSBTAP00000044966/1-477 TPKEMSRCLA SYPEPPGYIF EEIDALGHRI YRPVSQTGSR RSSRFSVGDS bmy_21475T0/1-449 TPKEMSRCLA SYPELPGYIF EETDALGHRI YRPVSQTGSR RSSRLSVGDS BACU006598/1-409 TPKAMSRCLA SYPEPPGYIF EETDALGHRI YRPVSQTGSR RSSRLSVGDS 501 550 ENSP00000369907/1-474 ENPNQRELEV LA ENSTTRP00000001665/1-474 ENPNQQELTV SA ENSBTAP00000044966/1-477 ENPNQQELTV SA bmy_21475T0/1-449 ENPNEQELTV SA BACU006598/1-409 ENPNQQELTV SA