KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:56:36 2014  Check: 00 ..

 Name: BACU007632/1-122          Len:    164  Check:  1703  Weight:  1.00
 Name: ENSP00000420176/1-117     Len:    164  Check:  6749  Weight:  1.00
 Name: ENSBTAP00000044967/1-116  Len:    164  Check:  6237  Weight:  1.00
 Name: bmy_20082T0/1-129         Len:    164  Check:  7490  Weight:  1.00
 Name: ENSTTRP00000009551/1-116  Len:    164  Check:  5681  Weight:  1.00

//


                          1                                                   50
BACU007632/1-122          ---------- ---------- ---------- MSAPGARLSS LSRLPLVRVK 
ENSP00000420176/1-117     MAAAAAAGSG TPREEEGPAG EAAASQPQAP TSVPGAR--- LSRLPLARVK 
ENSBTAP00000044967/1-116  -MAAAAPGSG AAREEEGTGG DAATPQPPAP TSAPGAR--- LSRLPLARVK 
bmy_20082T0/1-129         -MAALAVGKG AFREEEGTGG DAAAPQPHAP TSAPGAR--- LSRLPLARVK 
ENSTTRP00000009551/1-116  -MAAVATGNG AFQEEEGTGG DAAAPQPHAP TSAPGAR--- LSRLPLARVK 


                          51                                                 100
BACU007632/1-122          ALVE-DPDVT LPGQEASFIL ARAV------ ----ELFVET IAKDACCCAQ 
ENSP00000420176/1-117     ALVKADPDVT LAGQEAIFIL ARAA------ ----ELFVET IAKDAYCCAQ 
ENSBTAP00000044967/1-116  ALVKADPDVT LAGQEAIFIL ARAA------ ----ELFVET IAKDAYCCAQ 
bmy_20082T0/1-129         ALVKADPDVT LAGQEAIFIL ARAAVRQRHN GVAGELFVET IAKDAYCCAQ 
ENSTTRP00000009551/1-116  ALVKADPDVT LAGQEAIFIL ARAA------ ----ELFVET IAKDAYCCAQ 


                          101                                                150
BACU007632/1-122          QGKWKTLQ-R DLDNAIEAVS TASICFSGGY FGLIAELGSF VSLYLPPSAR 
ENSP00000420176/1-117     QGKRKTLQRR DLDNAIEAVD EFA--FLEGT LD-------- ---------- 
ENSBTAP00000044967/1-116  QGKRKTLQRR DLDNAIEAVD EFA--FLEGT LD-------- ---------- 
bmy_20082T0/1-129         QGKRKTLQRR DLDNAIEAVD EFA--FLEGE FSITG----- ---------- 
ENSTTRP00000009551/1-116  QGKRKTLQRR DLDNAIEAVD EFA--FLEGI LD-------- ---------- 


                          151                                                200
BACU007632/1-122          PSAGLSFEKE SLEY 
ENSP00000420176/1-117     ---------- ---- 
ENSBTAP00000044967/1-116  ---------- ---- 
bmy_20082T0/1-129         ---------- ---- 
ENSTTRP00000009551/1-116  ---------- ----