KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:36 2014 Check: 00 .. Name: bmy_12457T0/1-350 Len: 488 Check: 4160 Weight: 1.00 Name: ENSTTRP00000004718/1-350 Len: 488 Check: 6451 Weight: 1.00 Name: ENSP00000353557/1-408 Len: 488 Check: 6321 Weight: 1.00 Name: BACU018964/1-350 Len: 488 Check: 7039 Weight: 1.00 Name: ENSBTAP00000044982/1-323 Len: 488 Check: 4827 Weight: 1.00 // 1 50 bmy_12457T0/1-350 MTDALMSKFK VSPQ------ ---------- ---------- ---------- ENSTTRP00000004718/1-350 ---------- ---------- ---------- ---------- ---------- ENSP00000353557/1-408 MIPPEQPQQQ LQPPSPAPPN HVVTTIENLP AEGSGGGGSL SASSRAGVRQ BACU018964/1-350 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000044982/1-323 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_12457T0/1-350 ------EFRL ASSVMLSFEY AQQVAGVRRQ ACSGLFPLYR ISGKQPDDRV ENSTTRP00000004718/1-350 --------EM LISVALGQVL SLLICGI--- ---------S LTSKYLSEDF ENSP00000353557/1-408 RIRKVLNREM LISVALGQVL SLLICGI--- ---------G LTSKYLSEDF BACU018964/1-350 --------EM LISVALGQVL SLLICGI--- ---------S LTSKYLSEDF ENSBTAP00000044982/1-323 ---------- ---------- ---------- ---------- ---------F 101 150 bmy_12457T0/1-350 DFNGVIQLSY LDNRILFTRR KPPGNFTTKM VEVYDPGTDR LGSKLSGGQG ENSTTRP00000004718/1-350 HANTPVFQSF LNYILLFLV- -----YTTTL A--------- ---------- ENSP00000353557/1-408 HANTPVFQSF LNYILLFLV- -----YTTTL A--------- ---------- BACU018964/1-350 HANTPVFQSF LNYILLFLV- -----YTTTL A--------- ---------- ENSBTAP00000044982/1-323 HFTSPSFFSN VDEKIFFLM- -----FMRKL V--------- ---------- 151 200 bmy_12457T0/1-350 LPVHDSDQYP GSDKVLTTFP LSSELKPKNF WVLIFYNFLL DIEMYAKKAP ENSTTRP00000004718/1-350 -------VRQ GEENLLAIL- ------RRRW WKYMILG-LI DLE------- ENSP00000353557/1-408 -------VRQ GEENLLAIL- ------RRRW WKYMILG-LI DLE------- BACU018964/1-350 -------VRQ GEENLLAIL- ------RRRW WKYMILG-LI DLE------- ENSBTAP00000044982/1-323 -------CNA GEENLLAIL- ------RRRW WKYMILG-LI DLE------- 201 250 bmy_12457T0/1-350 VVGIYYNAAL FYYANNLFAK GLSYQKIIGK LFFRIFKLLD CFVIPVVILL ENSTTRP00000004718/1-350 ---------- ---ANYLVVK AYQYTTLTS- -----IQLLD CFVIPVVILL ENSP00000353557/1-408 ---------- ---ANYLVVK AYQYTTLTS- -----IQLLD CFVIPVVILL BACU018964/1-350 ---------- ---ANYLVVK AYQYTTLTS- -----IQLLD CFVIPVVILL ENSBTAP00000044982/1-323 ---------- ---ANYLVVK AYQYTTLTS- -----IQLLD CFVIPVVILL 251 300 bmy_12457T0/1-350 SWFFLLIRYK AVHFLGIIVC ILGMGCMAGA DVLVGRHQGA --GENKLVGD ENSTTRP00000004718/1-350 SWFFLLIRYK AVHFLGIIVC ILGMGCMAGA DVLVGRHQGA --XXXXXXXX ENSP00000353557/1-408 SWFFLLIRYK AVHFIGIVVC ILGMGCMVGA DVLVGRHQGA --GENKLVGD BACU018964/1-350 SWFLLLIRYK AVHFLGIIVC ILGMGCMAGA DVLVGRHQGA --GENKLVGD ENSBTAP00000044982/1-323 SWFFLLIRYK AVHFIGIVVC ILGMGCMAGA DVLVGRHQGA VLGENKLVGD 301 350 bmy_12457T0/1-350 LLVLGGATLY GISNVWEEYI IRTLSRVEFL GMIGLFGAFF R--------- ENSTTRP00000004718/1-350 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXAIMEH ENSP00000353557/1-408 LLVLGGATLY GISNVWEEYI IRTLSRVEFL GMIGLFGAFF SGIQLAIMEH BACU018964/1-350 LLVLGGATLY GISNVWEEYI IRTLSRVEFL GMIGLFGAFF SGIQLAIMEH ENSBTAP00000044982/1-323 LLVLGGATLY GISNVWEEYI IRTLSRVEFL GMIGLFGAFF SGIQLAIMEH 351 400 bmy_12457T0/1-350 ---------- ---LLYVGFS ACMFGLYSFM PVVIKKTSAT SVNLSLLTAD ENSTTRP00000004718/1-350 KELLKVPWDW QIGLLYVGFS ACMFGLYSFM PVVIKKTSAT SVNLSLLTAD ENSP00000353557/1-408 KELLKVPWDW QIGLLYVGFS ACMFGLYSFM PVVIKKTSAT SVNLSLLTAD BACU018964/1-350 KELLKVPWDW QIGLLYVGFS ACMFGLYSFM PVVIKKTSAT SVNLSLLTAD ENSBTAP00000044982/1-323 KELLKVPWDW QIGLLYVGFS ACMFGLYSFM PVVIKKTSAT SVNLSLLTAD 401 450 bmy_12457T0/1-350 LYSLFCGLFL FHYK------ ---------- ---------- ---------- ENSTTRP00000004718/1-350 LYSLFCGLFL FHYKFSGLYL LSFFTILLGL VLYSSTSTYI AQDPRVYKQF ENSP00000353557/1-408 LYSLFCGLFL FHYKFSGLYL LSFFTILIGL VLYSSTSTYI AQDPRVYKQF BACU018964/1-350 LYSLFCGLFL FHYKFSGLYL LSFFTILLGL VLYSSTSTYI AQDPRVYKQF ENSBTAP00000044982/1-323 LYSLFCGLFL FHYKFSGLYL LSFFTILLGL VLYSSTSTYI AQDPRVYKQF 451 500 bmy_12457T0/1-350 ---------- ----QI---- ---------- -------- ENSTTRP00000004718/1-350 RNPSGPVVDL PATAQVEPSV TYTSLGQETE DEPHVRVA ENSP00000353557/1-408 RNPSGPVVDL PTTAQVEPSV TYTSLGQETE EEPHVRVA BACU018964/1-350 RNPSGPVVDL PATAQVEPSV TYTSLGQETE DEPHVRVA ENSBTAP00000044982/1-323 RNPSGPVVDL PATAQVEPSV TYTSLGQETE DEPHVRVA