KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:40 2014 Check: 00 .. Name: ENSP00000351832/1-1393 Len: 1561 Check: 8560 Weight: 1.00 Name: ENSBTAP00000045024/1-1392 Len: 1561 Check: 9146 Weight: 1.00 Name: BACU004031/1-1519 Len: 1561 Check: 84 Weight: 1.00 Name: ENSTTRP00000012370/1-1392 Len: 1561 Check: 7569 Weight: 1.00 Name: bmy_17004T0/1-998 Len: 1561 Check: 8771 Weight: 1.00 // 1 50 ENSP00000351832/1-1393 MACSIVQFCY FQDLQAARDF LFPHLREEIL SGALRRDPSK STDWEDDGWG ENSBTAP00000045024/1-1392 MACSIVQFCS FQDLQAARDF LFPHLREETP SGAVRRDPSK S-NWEDDGWG BACU004031/1-1519 MACSIVQFCT FWDLQAARDF LFPRLREETP SCTVRRDPSK S-NWEDDGWG ENSTTRP00000012370/1-1392 MACSIVQFCT FQDLQAARDF LFPRLREENP SCTVRRDPSK S-NWEDDGWG bmy_17004T0/1-998 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000351832/1-1393 AWEENEPQEP EEEGNTCKTQ KTSWLQDCVL SLSPTNDLMV IAREQKAVFL ENSBTAP00000045024/1-1392 AWEESEPQEP EEEGNTCKPQ KTCWLQDCIL SLSPTNDLMV IAREQKAVFL BACU004031/1-1519 AWEETEPQEP SRSGVEPLVT PFILNAQQQS RVEGAVAGFL IGPSSPGQCS ENSTTRP00000012370/1-1392 AWEETEPQDP EEEGNTCKTQ KTSWLQDCVL SLSPTNDLMV ITREQKAVFL bmy_17004T0/1-998 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000351832/1-1393 VPKWKYSDKG KEEMQFAVGW SGSLNVEEGE CVTSALCIPL ASQKRSSTGR ENSBTAP00000045024/1-1392 VPKWKHSDKG KEEMQFAVGW SGSLSVEEGE CVTSALCIPL ASQKRSSTGR BACU004031/1-1519 VEAAQRLPR- RLNPSACVQM PVSKSLLRLE CVTSALCIPL ASQKRSSTGR ENSTTRP00000012370/1-1392 VPKWKHSDKG KEEMQFAVGW SGSLSVEEGE CVTSALCIPL ASQKRSSTGR bmy_17004T0/1-998 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000351832/1-1393 PDWTCIVVGF TSGYVRFYTE NGVLLLAQLL NEDPVLQLKC RTYEIPRHPG ENSBTAP00000045024/1-1392 PDWTCIVVGF TSGYVRFYTE NGVLLLAQLL NEDSVLQLKC RTYEIPRHPG BACU004031/1-1519 PDWTCIVVGF TSGYVRFYTE SGVLLLSQLL NEDPVLQLKC RTYEIPRHPG ENSTTRP00000012370/1-1392 PDWTCIVVGF TSGYVRFYTE SGVLLLSQLL NEDPVLQLKC RTYEIPRHPG bmy_17004T0/1-998 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000351832/1-1393 VTEQNEELSI LYPAAIVTID GFSLFQSLRA CRNQVAKAAA SGNENIQPPP ENSBTAP00000045024/1-1392 VTEQNEELSI LYPAAIVTID GFSLFQSLRA CRNQVAKAAA SGNENIQPPP BACU004031/1-1519 VTEQNEELSI LYPAAIVTID GFSLFQSLRA CRNQVAKAAA SGNENIQPPP ENSTTRP00000012370/1-1392 VTEQNEELSI LYPAAIVTID GFSLFQSLRA CRNQVAKAAA SGNENIQPPP bmy_17004T0/1-998 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000351832/1-1393 LAYKKWGLQD IDTIIDHASV GIMTLSPFDQ MKTASNIGGF NAAIKNSPPA ENSBTAP00000045024/1-1392 LAYKKWGLQD IDTIIDHASI GIMTLSPFDQ MKTASNIGGY NAAIKNSPPA BACU004031/1-1519 LAYKKWGLQD IDTIIDHASI GIMTLSPFDQ MKTASNIGGY NAAIKNSPPA ENSTTRP00000012370/1-1392 LAYKKWGLQD IDTIIDHASI GIMTLSPFDQ MKTASNIGGY NAAIKNSPPA bmy_17004T0/1-998 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000351832/1-1393 MSQYITVGSN PFTGFFYALE GSTQPLLSHV ALAVASKLTS ALFNAASGWL ENSBTAP00000045024/1-1392 MSQYITVGSS PFTGFFYALE GSTQPLLSHV ALAVASKLTS ALFNAASGWL BACU004031/1-1519 MSQYITVGSN PFTGFFYALE GSTQPLLSHV ALAVASKLTS ALFNAA---- ENSTTRP00000012370/1-1392 MSQYITVGSN PFTGFFYALE GSTQPLLSHV ALAVASKLTS ALFNAASGWL bmy_17004T0/1-998 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000351832/1-1393 GWKSKHEEEA VQKQKPKVEP ATPLAVRFGL PDSRRHGESI CLSPCNTLAA ENSBTAP00000045024/1-1392 GWKSKHEEEA FQKQKPKVEP ATPLAVRFGL PDSRRHGESI CLSPCNTLAA BACU004031/1-1519 ---------- ---------- ------RFGL PDSRRHGESI CLSPCNTLAA ENSTTRP00000012370/1-1392 GWKSKHEEEA VQKQKPKVEP ATPLAVRFGL PDSRRHGESI CLSPCNTLAA bmy_17004T0/1-998 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000351832/1-1393 VTDDFGRVIL LDVARGIAIR MWKGYRDAQI GWIQTVEDLH ERVPEKADFS ENSBTAP00000045024/1-1392 VTDDFGRVIL LDVARGIAIR MWKGYRDAQT GWIQIVEDLH ERVPEKGDFS BACU004031/1-1519 VTDDFGRIIL LDVARGIAIR MWKGYRDAQT GWIQIVEDLH ERVPEKVDFS ENSTTRP00000012370/1-1392 VTDDFGRIIL LDVARGIAIR MWKGYRDAQT GWIQIVEDLH ERVPEKVDFS bmy_17004T0/1-998 ---------- ---------- MWKGYRDAQT GWIQIVEDLH ERVPEKVHFS 451 500 ENSP00000351832/1-1393 PFGNSQGPSR VAQFLVIYAP RRGILEVWST QQGPRVGAFN VGKHCRLLYP ENSBTAP00000045024/1-1392 PFGSPQGPSR VAQFLVIYAP RRGILEVWST QQGPRVGAFN VGKYCRLLYP BACU004031/1-1519 PFGSPQGPSR VAQFLVIYAP RRGILEVWST QQGPRVGAFN VGKHCRLLYP ENSTTRP00000012370/1-1392 PFGSPQGPSR VAQFLVIYAP RRGILEVWST QQGPRVGAFN VGKHCRLLYP bmy_17004T0/1-998 PFGSPQGPSR VAQFLVIYAP RRGILEVWST QQGPRVGAFN VGKHCRLLYP 501 550 ENSP00000351832/1-1393 GYKIMGLNNV TSQSWQPQTY QICLVDPVSG SVKTVNVPFH LALSDKKSER ENSBTAP00000045024/1-1392 GYKIMGLNNI TSQSWQPQTY QICLVDPVSG SVKTVSVPFH LALSDKKSER BACU004031/1-1519 GYKIMGLNNV TSQNWQPQTY QICLVDPVSG SVKTVNVPFH LALSDKKSER ENSTTRP00000012370/1-1392 GYKIMGLNNV TSQNWQPQTY QICLVDPVSG SVKTVNVPFH LALSDKKSER bmy_17004T0/1-998 GYKIMGLNNV TSQNWQPQTY QICLVDPVSG SVKTVNVPFH LALSDKKSER 551 600 ENSP00000351832/1-1393 AKDMHLVKKL AALLKTKSPN LDLVETEIKE LILDIKYPAT KKQALESILA ENSBTAP00000045024/1-1392 AKDMHLVKKL GTLLKAKCPN LDLIETEIKE LILDIKYPAT KKQALESILA BACU004031/1-1519 AKDMHLVKKL GALLKAKSPN LDLIETEIKE LILDIKYPAT KKQALESILA ENSTTRP00000012370/1-1392 AKDMHLVKKL GALLKAKSPN LDLIETEIKE LILDIKYPAT KKQALESILA bmy_17004T0/1-998 AKDMHLVKKL GALLKAKSPN LDLIETEIKE LILDIKYPAT KKQALESILA 601 650 ENSP00000351832/1-1393 SERLPFSCLR NITQTLMDTL KSQELESVDE GLLQFCANKL KLLQLYESVS ENSBTAP00000045024/1-1392 SERLPFSCLK NITQTLMDTL KNQELESVDE GLLQFCANKL KLLHLYESVS BACU004031/1-1519 SIRLPFSCLR NITQTLMDTL KNQELECVDE GLLQFCANKL KLLHLYESVS ENSTTRP00000012370/1-1392 SIRLPFSCLR NITQTLMDTL QNQELECVDE GLLQFCANKL KLLHLYESVS bmy_17004T0/1-998 SIRLPFSCLR NITQTLMDTL KNQELECVDE GLLQFCANKL KLLHLYESVS 651 700 ENSP00000351832/1-1393 QLNSLDFHLD TPFSDNDLAL LLRLDEKELL KLQALLEKYK QENTRTNVRF ENSBTAP00000045024/1-1392 QLNSTDFHSD TPFSDNDLAV LLRLDEKELL KLQALLEKYK QENNRTAVRF BACU004031/1-1519 QLNSIDFHSD TPFSDNDLAV LLRLDEKELL KLQALLEKYK QENGRTAVRF ENSTTRP00000012370/1-1392 QLNSIDFHSD TPFSDNDLAV LLRLDEKELL KLQALLEKYK QENSRTAVRF bmy_17004T0/1-998 QLNSIDFHSD TPFSDNDLAV LLRLDEKELL KLQALLEKYK QENSRTAVRF 701 750 ENSP00000351832/1-1393 SDDKDGVLPV KTFLEYLEYE KDVLNIKKIS EEEYVALGSF FFWKCLHGES ENSBTAP00000045024/1-1392 SDDKDGVLPV KTFLEYLEYE KDVVNIKKTS EEEYVALGSF FFWKCLCGES BACU004031/1-1519 SDDKDGVLPV KTFLEYLEYE KDVISIKKIS EEDCVALGSF FFWKCLCGES ENSTTRP00000012370/1-1392 SDDKDGVLPV KTFLEYLEYE KDVINIKKIS EEDRVALGSF FFWKCLCGES bmy_17004T0/1-998 SDDKDGVLPV KTFLEYLEYE KDVINIKKIS EEDCVALGSF FFWKCLCGES 751 800 ENSP00000351832/1-1393 STEDMCHTLE SAGLSPQLLL SLLLSVWLSK EKDILDKPQS ICCLHTMLSL ENSBTAP00000045024/1-1392 STEEMCHTLE SAGLSPQLLL SLLLSVWLSK EKDILDKPQS VCCLHTMLYL BACU004031/1-1519 STEDMCHTLE SAGLSPQLLL SLLLSVWLSK EKDILDNPRS VCCLHTTLYL ENSTTRP00000012370/1-1392 STEDMCHALE SAGLSPQLLL SLLLSVWLSK EKDILDKPQS VCCLHTTLCL bmy_17004T0/1-998 STEDMCHTLE SAGLSPQLLL SLLLSVWLSK EKDILDNPQS VCCLHTMLYL 801 850 ENSP00000351832/1-1393 LSKMKVAIDE TWDSQSVSPW WQQMRTACIQ SENNGAALLS AHVGHSVAAQ ENSBTAP00000045024/1-1392 LSKMKVAIEE TWDSQSVSPW WQQMRTVCIQ SENNGAALLS AHVGHAVAAQ BACU004031/1-1519 LSKMKVAGEE AWDSQSVSPW WQQMRTACIQ SENNGAALLS AHVGHAVAAQ ENSTTRP00000012370/1-1392 LSKMKVAIEE TWDSQSVSPW WQQMRTACIQ SEHNGAALLS AHVGHAVAAQ bmy_17004T0/1-998 LSKMKVAGEE TWDSQSVSPW WQQMRTACIQ SENNGAALLS AHVGHAVAAQ 851 900 ENSP00000351832/1-1393 ISNNMTEKKF SQTVLGADSE ALTDSWEALS LDTEYWKLLL KQLEDCLILQ ENSBTAP00000045024/1-1392 ISNSLTEKKF SQTVSGTDSE ALTDSWEALS LDTEYWKLLL KQLEDCLLLQ BACU004031/1-1519 LSNNLTEKKF SQTVSGTDSE ALTDSWEALS LDTEYWKLLL KQLEDCLLLQ ENSTTRP00000012370/1-1392 ISNSLTEKNF SQTVSGTDSE ALTDSWEALS LDTEYWKLLL KQLEDCLLLQ bmy_17004T0/1-998 LSNNLTEKKF SQTVSGTDSE ALTDSWEALS LDTEYWKLLL KQLEDCLLLQ 901 950 ENSP00000351832/1-1393 TLLHSKGNTQ TSKVSSLQAE PLPRLSVKKL LEGGKGGIAD SVAKWIFKQD ENSBTAP00000045024/1-1392 TLLHSKTNTR TSKVSSLQAE PLPKLSVKKL LEGGKGGIAD SVAKWIFKQD BACU004031/1-1519 TLLHSKVNGP ASKASSLQAE PLPKLSVKKL LEGGKGGIAD SVAKWIFKQD ENSTTRP00000012370/1-1392 TLLHSKVNAS TSKASSLQAE PLPKLSVKKL LEGGKGGIAD SVAKWIFKQD bmy_17004T0/1-998 TLLHSKVNAP TSKASSLQAE PLPKLSVKKL LEGGKGGIAD SVAKWIFKQD 951 1000 ENSP00000351832/1-1393 FSPEVLKLAN EERDAENPDE PKEGVNRSFL EVSEMEMDLG AIPDLLHLAY ENSBTAP00000045024/1-1392 FSPEVLKLAN KGRDAENPDE PREGINRGLF EVSEVEMDLG AIPDLLHLAY BACU004031/1-1519 VSPEVLKLAN KERDAENSDE PKDGINRGSS EVSEMEKDLG AIPDLLHLAY ENSTTRP00000012370/1-1392 VSPEVLKLAN KERDAENSDE PKEGINRGLS EVSEVETDLG AIPDLLHLAY bmy_17004T0/1-998 VSPEVLKLAN KERDAENSDE PKEGINRALS EVSEVEKDLG AIPDLLHLAY 1001 1050 ENSP00000351832/1-1393 EQFPCSLELD VLHAHCCWEY VVQWNKDPEE ARFFVRSIEH LKQIFNAHVQ ENSBTAP00000045024/1-1392 KQFPCSLELD VLHAHCCWEY VVQWNKDPEE ARFFVRSIEH LKHILNAHIQ BACU004031/1-1519 KQFPCSLELD VLHAHCCWEY VVQWNKDPEE ALFFVRSIEH LEHILNARVQ ENSTTRP00000012370/1-1392 KQFPCSLELD VLHAHCCWEY VVQWNKDPEE ALFFVRSIEH LEHILNAHVQ bmy_17004T0/1-998 KQFPCSLELD VLHAHCCWEY VVQWNKDPEE ALFFVRSIEH LEHILNAHVQ 1051 1100 ENSP00000351832/1-1393 NGIALMMWNT FLVKRFSAAT YLMDKVG--- ---------- ------KSPK ENSBTAP00000045024/1-1392 NGIALMMWNT FLVKRFSAAT YLMDKVG--- ---------- ------KAPK BACU004031/1-1519 NGIALMMWNT FLVKRFSAAT YLMDKVRLEK HQRIGYA--- ------EGLS ENSTTRP00000012370/1-1392 NGIALMMWNT FLVKRFSAAT YLMDKVG--- ---------- ------KAPK bmy_17004T0/1-998 NGIALMMWNT FLVKRFSAAT YLMDKVRLEK HQRIGYAEGF THERNLTAHR 1101 1150 ENSP00000351832/1-1393 DRLCRR---- --DVGMSDTA MTSFLGSCLD LLQILME--- ---------- ENSBTAP00000045024/1-1392 DRLCRR---- --DVGMSDTA VTSFLGCCWD LLQTLME--- ---------- BACU004031/1-1519 DSMLKLSLPR CLQLWTVDRR LTCGHGCVV- LLSFRLEVYS GRGFIRVVSL ENSTTRP00000012370/1-1392 DRLCRR---- --DVGMSDTA MTSFLGCCWD LFQTLME--- ---------- bmy_17004T0/1-998 DGLASKCLSE PDDVGMSDTA MTSFLGCCWD LLQTLME--- ---------- 1151 1200 ENSP00000351832/1-1393 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045024/1-1392 ---------- ---------- ---------- ---------- ---------- BACU004031/1-1519 PSFRLEVYSG SGFIRVVSLP SFRLEVYSGR GFIRVVSLPS FRLEVYSGRG ENSTTRP00000012370/1-1392 ---------- ---------- ---------- ---------- ---------- bmy_17004T0/1-998 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000351832/1-1393 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045024/1-1392 ---------- ---------- ---------- ---------- ---------- BACU004031/1-1519 FIRVVSLPSF RLEVYSGRGF IRVVSLPSFR LEVYSGSGFI RVVSLPSFRL ENSTTRP00000012370/1-1392 ---------- ---------- ---------- ---------- ---------- bmy_17004T0/1-998 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000351832/1-1393 ---------- ---------- ---------- ADVSRDEIQV PVLDTEDAWL ENSBTAP00000045024/1-1392 ---------- ---------- ---------- ADVSRDEMQV PVLDTEDAWL BACU004031/1-1519 EVYSGRGFIR VVSLPSFRLE VYSESGFIRV ADVSRDEMQV PAVDAEDAWL ENSTTRP00000012370/1-1392 ---------- ---------- ---------- ADVSRDEMQV PVLDTEDAWL bmy_17004T0/1-998 ---------- ---------- ---------- ADVSRDEMQV PAVDAEDAWL 1301 1350 ENSP00000351832/1-1393 SVEGPISIVE LALEQKHIHY PLVEHHSILC SILYAVMRFS LKTVKPLSLF ENSBTAP00000045024/1-1392 TVEGPVSIVE LALDQKHIHY PLVVHHSVLG AILYAVMRFS LKTVKPLSLF BACU004031/1-1519 AVEGPVSIVE LALEQRHIHY PLVEHHSALC ALLYAVMRFS LKAVKPLSLF ENSTTRP00000012370/1-1392 AVEGPVSIVE LALEQRHIHY PLVEHHSVLC SLLYAVMRFS LKAVKPLSLF bmy_17004T0/1-998 AVEGPVSIVE LALEQRHIHY PLVEHHSALC ALLYAVMRFS LKAVKPLSLF 1351 1400 ENSP00000351832/1-1393 DSKGKNAFFK DLTSIQLLPS GEMDPNFISV RQQFLLKVVS AAVQAQHSAT ENSBTAP00000045024/1-1392 DSKGKNAFFK DLTSIQLLPS GEMDPNFISV RQQFLLKVVS AAVQARHTVA BACU004031/1-1519 DSKGKNAFFK DLTSIQLLPS GEMDANFISV RQQFLLKVVS AAVQARHAVT ENSTTRP00000012370/1-1392 DSKGKNAFFK DLTSIQLLPS GEMDANFISV RQQFLLKVVS AAVQARHAVT bmy_17004T0/1-998 DSKGKNAFFK DLTSIQLLPS GEMDANFISV RQQFLLKVVS AAVQARHAVT 1401 1450 ENSP00000351832/1-1393 KVKDPTEEAT PTPFGKDQDW PALAVDLAHH LQVSEDVVRR HYVGELYNYG ENSBTAP00000045024/1-1392 KDRDSTEEAA TAPFGKDQDW PVLAVDLAHH LQVNEDVVRR HYVGELYNYG BACU004031/1-1519 KDKDSSEEAL TTLFGKDQDW PVLALDLAHH LQVSEDVVRR HYVGELYSYG ENSTTRP00000012370/1-1392 KDKGSSEEAM TTLLGKDQDW PVLALDLAHH LQVSEDVVRR HYVGELYSYG bmy_17004T0/1-998 KDKDSSEEAL TTLFGKDQDW PVLALDLAHH LQVSEDVVRR HYVGELYSYG 1451 1500 ENSP00000351832/1-1393 VDHLGEEAIL QVHDKEVLAS QLLVLTGQRL AHALLHTQTK EGMELLARLP ENSBTAP00000045024/1-1392 ADHLGEEAIL QVQDKEVLAS QLLVLIGQRL AHAVLRTQTR EGLELLARLP BACU004031/1-1519 ADHLGEEAIL QVQDKEVLAS QLLVLIGQRL AHAVLRTQTR EGLELLARLP ENSTTRP00000012370/1-1392 ADHLGEEAIL QVQDKEVLAS QLLVLIGQRL AHAVLRTQTR EGLELLARLP bmy_17004T0/1-998 ADHLGEEAIL QVQDKEVLAS QLLVLIGQRL AHAVLRTQTR EGLELLARLP 1501 1550 ENSP00000351832/1-1393 PTLCTWLKAM DPQDLQNTEV PIATTAKLVN KVIELLPEKH GQYGLALHLI ENSBTAP00000045024/1-1392 PTLCTWLKAM NPQDLQNTEV PIATTAKLVN KVIELLPENH GQYSLALHLT BACU004031/1-1519 PTLCTWLKAM NPQDLQNTEV PIATTAKLVN KVIELLPENH GQYSLALHLT ENSTTRP00000012370/1-1392 PTLCTWLKAM SPQDLQNTEV PIATTAKLVN KVIELLPENH GQYSLALHLT bmy_17004T0/1-998 PTLCTWLKAM NPQDLQNTEV PIATTAKLVN KVIELLPENH GQYSLALHLT 1551 1600 ENSP00000351832/1-1393 EAVEAISLPS L ENSBTAP00000045024/1-1392 EAVEAISLPP L BACU004031/1-1519 EAVEAIAIPP L ENSTTRP00000012370/1-1392 EAVEAIAIPP L bmy_17004T0/1-998 EAVEAIAIPP L