KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:41 2014 Check: 00 .. Name: ENSP00000360250/1-522 Len: 530 Check: 2508 Weight: 1.00 Name: ENSBTAP00000045026/1-525 Len: 530 Check: 2684 Weight: 1.00 Name: ENSTTRP00000005345/1-395 Len: 530 Check: 3438 Weight: 1.00 Name: bmy_11847T0/1-396 Len: 530 Check: 1902 Weight: 1.00 Name: BACU012451/1-513 Len: 530 Check: 6071 Weight: 1.00 // 1 50 ENSP00000360250/1-522 ----MGREEL FLTFSFSSGF QESNVKTFCS KNILAILGFS SIIAVIALLA ENSBTAP00000045026/1-525 ----MYSQRR FSSSELPTRT EESELKVFCS KNILSILGFS CIIAVIALLA ENSTTRP00000005345/1-395 ---------- ---------- ---------- ---------- ---------- bmy_11847T0/1-396 MKRGLLEQLS FEAYGGELDF EESEVKIFCS KNILGILGFS SVIAVVALLA BACU012451/1-513 ---------- ------MEDR RESEVKIFCS KNILGILGFS SVIAVVALLA 51 100 ENSP00000360250/1-522 VGLTQNKALP ENVKYGIVLD AGSSHTSLYI YKWPAEKEND TGVVHQVEEC ENSBTAP00000045026/1-525 LGLTQNKALP ENVKFGIVLD AGSSHTSLYI YRWPAEKEND TGVVTQIEEC ENSTTRP00000005345/1-395 ---------- ----FGIVLD AGSSHTNLYI YKWPAEKEND TGVVTQVEEC bmy_11847T0/1-396 LGLTQNKPLP ENVKFGIVLD AGSSHTNLYI YKWPAEKEND TGVVTQIEEC BACU012451/1-513 LGLTQNKPLP ENVKFGIVLD AGSSHTNLYI YKWPAEKEND TGVVTQIEEC 101 150 ENSP00000360250/1-522 RVKGPGISKF VQKVNEIGIY LTDCMERARE VIPRSQHQET PVYLGATAGM ENSBTAP00000045026/1-525 KLKGPGISGF AKKVNEINVY LTACMERAQK VIPSIQHMET PVYLGATAGM ENSTTRP00000005345/1-395 KVKGPGISEF AQKLSEIDIY LTACMERARK VIPASQHTET PVYLGATAGM bmy_11847T0/1-396 KVKGPGISEF AQKLNEIDIY LTACMERARK VIPTSQHTET PVYLGATAGM BACU012451/1-513 KVKGPGISEF AQKLSEIDIY LTACMERARK VIPTSQHTET PVYLGATAGM 151 200 ENSP00000360250/1-522 RLLRMESEEL ADRVLDVVER SLSNYPFDFQ GARIITGQEE GAYGWITINY ENSBTAP00000045026/1-525 RLLRMENKQM ADKILAAVAS SISKYPFDFQ GARIISGQEE GAYGWITVNY ENSTTRP00000005345/1-395 RLLRMENERL ADKILAAVAK SISSYPFDFQ GARIITGQEE GAYGWITINY bmy_11847T0/1-396 RLLRMENERL ADKILAAVAN SISSYPFDFQ GARIITGQEE GAYGWITINY BACU012451/1-513 RLLRMENERL ADKILAAVAH SISSYPFDFQ GARIITGQEE GAYGWITINY 201 250 ENSP00000360250/1-522 LLGKFSQKTR WFSIVPYETN NQETFGALDL GGASTQVTFV PQNQTIESPD ENSBTAP00000045026/1-525 LLGKFTQKLS WFNLKPSKDD TQETYGALDL GGASTQITFV PQNETTESPN ENSTTRP00000005345/1-395 LLGRFTQKLS WFNLKPSEGD TQETYGALDL GGASTQITFV PRNETTESSN bmy_11847T0/1-396 LLGRFTQKLS WFNLKPSEGD TQETYGALDL GGASTQITFV PRNETTESSN BACU012451/1-513 LLGRFTQKLS WFNLKPSEGD TQETYGALDL GGASTQITFV PRNETTESSN 251 300 ENSP00000360250/1-522 NALQFRLYGK DYNVYTHSFL CYGKDQALWQ KLAKDIQVAS NEILRDPCFH ENSBTAP00000045026/1-525 NNLYFRLYGK NYSVYTHSFL CYGKDQALLQ KLALGLQ-GT NGIIHEPCFH ENSTTRP00000005345/1-395 NTLHFRLYGK NYGVYTHSFL CYGKDQALLQ KLSKDLQ-AT NGTIRDPCFH bmy_11847T0/1-396 TALHFRLYGK NYGVYTHSFL CYGKDQALLQ KLSKDLQ-AS ---------- BACU012451/1-513 TTLHFRLYGK NYGVYTHSFL CYGKDQALLQ KLSKDLQ-GT NGTIRDPCFH 301 350 ENSP00000360250/1-522 PGYKKVVNVS DLYKTPCTKR FEMT---LPF QQFEIQGIGN YQQCHQSILE ENSBTAP00000045026/1-525 SRYMRKIKMS VLNEGFCTKR HELNSSFYPL VDIEIRGAGN FQRCRQSIIQ ENSTTRP00000005345/1-395 SGYRRKMNMS DLYEAPCTRR FEATFPFLPF PEVEIRGTGN YQQCRRSILQ bmy_11847T0/1-396 ---------- ---------- ---------- ---------- ---------- BACU012451/1-513 SGYRRKMNMS DLYDAPCTRR FEATFPFLPF PEFEIRGTGN YRQCRRSILQ 351 400 ENSP00000360250/1-522 LFNTSYCPYS QCAFNGIFLP PLQGDFGAFS AFYFVMKFLN LTSEK-VSQE ENSBTAP00000045026/1-525 LFNTSYCPYS SCSFNGVFLP PLHGQFGAFS AFYYVMEFLN LTSEESVSVE ENSTTRP00000005345/1-395 LFNTSYCPYS SCSFNEILLP PLQGNFEXXX XXXXXXXXXX XXXXXXXXXX bmy_11847T0/1-396 ---------- ---------- -------AFS AFYYVMEFLN LTSEEQSTHK BACU012451/1-513 LFNTSYCPYS SCSFNGIFLP PPQGNFGAFS AFYYVMEFLN LTSEEQSTHK 401 450 ENSP00000360250/1-522 KVTEMMKKFC AQPWEEIKTS YAGVKEKYLS EYCFSGTYIL SLLLQGYHFT ENSBTAP00000045026/1-525 QLTEKLEEFC AQRWEEVQKN FGEVKEKYLS EYCFSGTYIL VLLLNGYHFT ENSTTRP00000005345/1-395 XXXXXXXX-X XXXXXXLQMY FGEVKEKY-S EYCFSGTYIL ALLLNGYHFT bmy_11847T0/1-396 KMINTLEKFC SRPWEEV--- ---------- ---------- ---------- BACU012451/1-513 KMINTLEKFC SRPWEELQMY FGEVKEKYLS EYCFSGTYIL ALLLNGYHFT 451 500 ENSP00000360250/1-522 ADSWEHIHFI GKIQGSDAGW TLGYMLNLTN MIPAEQPLST PLSHSTYVFL ENSBTAP00000045026/1-525 AESWKNIHFM NKVRSTSVGW TLGYMLNLTN KIPAEEPMSP PLPHSTYVFL ENSTTRP00000005345/1-395 AESWKDIHFM GK-------- ---------- ---------- ---------- bmy_11847T0/1-396 ---------- ---RSTSVGW TLGYMLNLTN MIPSEEPLST PLSHTTYVFL BACU012451/1-513 AESWKNIHFM GKVRSTSVGW TLGYMLNLTN MIPSEEPLST PLSHSTYVFL 501 550 ENSP00000360250/1-522 MVLFSLVLFT VAIIGLLIFH KPSYFWKDMV ENSBTAP00000045026/1-525 MVLFSLILLA VIIVGIVVFH KPSYFWKDMV ENSTTRP00000005345/1-395 ---------- ---------- ---------- bmy_11847T0/1-396 MVLFSLILVI AVIIGIFIFH KPSYFWKDMV BACU012451/1-513 MVLFSLILVI AVIIGIFIFH KPSYFWKDMV