KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:43 2014 Check: 00 .. Name: ENSBTAP00000045078/1-949 Len: 970 Check: 2202 Weight: 1.00 Name: BACU008294/1-881 Len: 970 Check: 4844 Weight: 1.00 Name: ENSP00000253055/1-954 Len: 970 Check: 6959 Weight: 1.00 Name: bmy_11277T0/1-624 Len: 970 Check: 549 Weight: 1.00 Name: ENSTTRP00000000727/1-948 Len: 970 Check: 5214 Weight: 1.00 // 1 50 ENSBTAP00000045078/1-949 MEEEEWGAAK EWGTTPAGPV WTAVFDYEAA GEEELTLRRG DRVQVLSQDC BACU008294/1-881 MEEEEWGAAK EWGTTPAGPV WTAVFDYEAA GDEELTLRRG DRVQVLSQDC ENSP00000253055/1-954 MEEEEGAVAK EWGTTPAGPV WTAVFDYEAA GDEELTLRRG DRVQVLSQDC bmy_11277T0/1-624 MEEEEWGAAK EWGTTPAGPV WTAVFDYEAA GDEELTLRRG DRVQVLSQDC ENSTTRP00000000727/1-948 MEEEELGAAK EWGTTPAGPV WTAVFDYEAA GEEELTLRRG DRVQVLSQDC 51 100 ENSBTAP00000045078/1-949 AVSGDEGWWT GQLPSGRVGV FPSNYVALGT PAAPAGLQLP QEIPFHELQL BACU008294/1-881 AVSGDEGWWT GQLPSGRVGV FPSNYVAPGT PAAPADLQLP QEIPFHQLQL ENSP00000253055/1-954 AVSGDEGWWT GQLPSGRVGV FPSNYVAPGA PAAPAGLQLP QEIPFHELQL bmy_11277T0/1-624 AVSGDEGWWT GQLPSG---- ---------- ---------- ---------- ENSTTRP00000000727/1-948 AVSGDEGWWT GQLPSGRVGV FPSNYVAPGT PAAPADLQLP QEIPFHELQL 101 150 ENSBTAP00000045078/1-949 EEIIGVGGFG KVYRALWRGE EVAVKAARLD PERDPAVTAE QVRQEARLFG BACU008294/1-881 EEIIGVGGFG KVYRALWHGE EVAVKAARLD PERDPAVTAE QVRQEARLFG ENSP00000253055/1-954 EEIIGVGGFG KVYRALWRGE EVAVKAARLD PEKDPAVTAE QVCQEARLFG bmy_11277T0/1-624 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000727/1-948 EEMIGVGGFG KVYRALWHGE EVAVKAARLD PERDPAVTAE QVRQEARLFG 151 200 ENSBTAP00000045078/1-949 ALQHPNIIAL RGACLSPPHL CLVMEYARGG ALSRVLAGRR VPPHVLVNWA BACU008294/1-881 ALQHPNIIAL RGACLSPPHL CLVMEYARGG ALSRVLAGRR VPPHVLVNWA ENSP00000253055/1-954 ALQHPNIIAL RGACLNPPHL CLVMEYARGG ALSRVLAGRR VPPHVLVNWA bmy_11277T0/1-624 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000727/1-948 ALQHPNIIAL RGACLSPPHL CLVMEYARGG ALSRVLAGRR VPPHVLVNWA 201 250 ENSBTAP00000045078/1-949 VQVARGMNYL HNDAPVPIIH RDLKSINILI LEAIENHNLA DTVLKITDFG BACU008294/1-881 VQVARGMNYL HNDAPVPIIH RDLKSINILI LEAIENHNLA DTVLKITDFG ENSP00000253055/1-954 VQVARGMNYL HNDAPVPIIH RDLKSINILI LEAIENHNLA DTVLKITDFG bmy_11277T0/1-624 ---------- ---------- -------LLI LEAIENHNLA DTVLKITDFG ENSTTRP00000000727/1-948 VQVARGMNYL HNDAPVPIIH RDLKSINILI LEAIENHNLA DTVLKITDFG 251 300 ENSBTAP00000045078/1-949 LAREWHKTTK MSAAGTYAWM APEVIRLSLF SKSSDVWSFG VLLWELLTGE BACU008294/1-881 LAREWHKTTK MSAAGTYAWM APEVIRLSLF SKSSDVWSFG VLLWELLTGE ENSP00000253055/1-954 LAREWHKTTK MSAAGTYAWM APEVIRLSLF SKSSDVWSFG VLLWELLTGE bmy_11277T0/1-624 LAREWHKTTK MSAAGTYAWM APEVIRLSLF SKSSDVWSFG VLLWELLTGE ENSTTRP00000000727/1-948 LAREWHKTTK MSAAGTYAWM APEVIRLSLF SKSSDVWSFG VLLWELLTGE 301 350 ENSBTAP00000045078/1-949 VPYREIDALA VAYGVAMNKL TLPIPSTCPE PFARLLEECW DPDPHGRPDF BACU008294/1-881 VPYREIDALA VAYGVAMNKL TLPIPSTCPE PFARLLEECW DPDPHGRPDF ENSP00000253055/1-954 VPYREIDALA VAYGVAMNKL TLPIPSTCPE PFARLLEECW DPDPHGRPDF bmy_11277T0/1-624 VPYREIDALA VAYGVAMNKL TLPIPSTCPE PFARLLEECW DPDPHGRPDF ENSTTRP00000000727/1-948 VPYREIDALA VAYGVAMNKL TLPILSTCPE PFARLLKECW DPDPHGRPDF 351 400 ENSBTAP00000045078/1-949 GSILKQLEVI EQSALFQMPL ESFHSLQEDW KLEIQHMFDD LRTKEKELRS BACU008294/1-881 GSILKQLEVI EQSALFQMPL ESFHSLQEDW KLEIQHMFDD LRTKEKELRS ENSP00000253055/1-954 GSILKRLEVI EQSALFQMPL ESFHSLQEDW KLEIQHMFDD LRTKEKELRS bmy_11277T0/1-624 GSILKQLEVI EQSALFQMPL ESFHSLQEDW KLEIQHMFDD LRTKEKELRS ENSTTRP00000000727/1-948 GSILKQLEVI EQSALFQMPL ESFHSLQEDW KLEIQHMFDD LRTKEKELRS 401 450 ENSBTAP00000045078/1-949 REEELLRAAQ EQRFQEEQLR RREQELAERE MDIVERELHL LMCQLSQEKP BACU008294/1-881 REEELLRAAQ EQRFQEEQLR RREQELAERE MDIVERELHL LMCQLSQEKP ENSP00000253055/1-954 REEELLRAAQ EQRFQEEQLR RREQELAERE MDIVERELHL LMCQLSQEKP bmy_11277T0/1-624 REEELLRAAQ EQRFQEEQLR RREQELAERE MDIVERELHL LMCQLSQEKP ENSTTRP00000000727/1-948 REEELLRAAQ EQRFQEEQLR RREQELAERE MDIVERELHL LMCQLSQEKP 451 500 ENSBTAP00000045078/1-949 RVRKRKGNFK RSRLLKLREG GSHISLPSGT RPHPFSSPER PL--GAALTQ BACU008294/1-881 RVRKRKGNFK RSRLLKLREG SSHISLPSGF E-HKITVQAS PTLDKRKGSD ENSP00000253055/1-954 RVRKRKGNFK RSRLLKLREG GSHISLPSGF E-HKITVQAS PTLDKRKGSD bmy_11277T0/1-624 RVRKRKGNFK RSRLLKLREG SSHISLPSGF E-HKITVQAS PTLDKRKGSD ENSTTRP00000000727/1-948 RVRRRRGNFK RSRLLKLREG SSHISLPSGF E-HKITVQAS PTLDKRKGSD 501 550 ENSBTAP00000045078/1-949 GSSLPFISLL FKRTLALLPI SLRLAKPGAM GVCLGDLPRL GALDDHCLLP BACU008294/1-881 GVSPPASPSI IPRLRAIRLT PVDGGGGSSS GSSSGGSGTW GRNSG----- ENSP00000253055/1-954 GASPPASPSI IPRLRAIRLT PVD-CGGSSS GSSSGGSGTW SR-GG----- bmy_11277T0/1-624 G--------- ---------- ---------- ---------- ---------- ENSTTRP00000000727/1-948 GVSPPASPSI IPRLRAIRLT PVDGGGGSSS GSSSGGSGTW GRNSG----- 551 600 ENSBTAP00000045078/1-949 SPRAFSLQGA PKIG---GVG AVI------G LLAVKGLGER HRAWGGGARG BACU008294/1-881 PPKKEELVGG KKKGRTWGPS STLQKERAGG EERLKALGEG SKQWSSSAPN ENSP00000253055/1-954 PPKKEELVGG KKKGRTWGPS STLQKERVGG EERLKGLGEG SKQWSSSAPN bmy_11277T0/1-624 ---------- --KGRTWGPS STLQKERAGG EERLKALGEG SKQWSSSAPN ENSTTRP00000000727/1-948 PPKKEELVGG KKKGRTWGPS STLQKERAGG EERLKALGEG SKQWSSSAPN 601 650 ENSBTAP00000045078/1-949 GVVLHAASTS PLRQPVPS-- AAWSWAPSYP DVLASSVSSP VTPHRLTLHH BACU008294/1-881 ------LGKS PKHTPITPGF ASLNEMEEFA EA-DGGSSVP PSPY--TTPS ENSP00000253055/1-954 ------LGKS PKHTPIAPGF ASLNEMEEFA EAEDGGSSVP PSPY--STPS bmy_11277T0/1-624 ------LGKS PKHTPITPGF ASLNEMEEFA EA-DGGSSVP ASPY--TTPS ENSTTRP00000000727/1-948 ------LGKS PKHTPITPGF ASLNEMEEFA EA-DGGSSVP PSPY--TTPS 651 700 ENSBTAP00000045078/1-949 YLSLRPPRRM TSGYKAGAQT VVCGRGGVWG K-ARGEGSPS CLPATLMLLW BACU008294/1-881 YLTVPLPSQP SPXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000253055/1-954 YLSVPLPAEP SPGARAPWEP TPSAPPARWG HGARRRCDLA LLGCATLLGA bmy_11277T0/1-624 YLTVPLPSQP SPGARAPWEP TPPARP---G HGSRRRCELA LLGCATLLGA ENSTTRP00000000727/1-948 YLTVPLPSQP SPGARAPWEP TPPARP---G HGSRRRCELA LLGCATLLGA 701 750 ENSBTAP00000045078/1-949 LGARYVLREV CSLTGQGLGR YSQRMALSRG MMLGLAGGLA PSDPFRLSRV BACU008294/1-881 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000253055/1-954 VGLGADVAEA RAADGEEQRR WLDGLFFPRA GRFPRGLSPP ARPHGRREDV bmy_11277T0/1-624 VGLGADVAEV RSANGEEQRS WLDGLFFPRG GRFPRGLSPP GRSPSRRDDA ENSTTRP00000000727/1-948 VGLGADVAEV RSVNGEEPRS WLDGLFFPRG GRFPRGLSPP GRSPSRRDDA 751 800 ENSBTAP00000045078/1-949 G------EAW TVILCSKPAK TRGSRLLLKM NSGIRMPDSL SVPPAPPSPP BACU008294/1-881 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000253055/1-954 GPGLGLAPSA TLVSLSSVSD CNSTRSLLRS DSDEAAPAAP SPPPSPPAPT bmy_11277T0/1-624 APGPGLAPSA TLVSLSSVSD CNSTRSLLRS DSDEAAPAAP SPPPSPPAP- ENSTTRP00000000727/1-948 APGPGLAPSA TLVSLSSVSD CNSTRSLLRS DSDEAAPAAP SPPPSPPAPA 801 850 ENSBTAP00000045078/1-949 P-PQPSTNPL VDLELESFKK DPRQSLTPTH VTAARAVSRG HRRTPSDGAL BACU008294/1-881 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG TGGRRQTGRW ENSP00000253055/1-954 PTPSPSTNPL VDLELESFKK DPRQSLTPTH VTAACAVSRG HRRTPSDGAL bmy_11277T0/1-624 -----STNPL VDLELESFKK DPRQSLTPTH VTAAHAVSRG HRRTPSDGAL ENSTTRP00000000727/1-948 P----STNPL VDLELESFKK DPRQSLTPTH VTAARAVSRG HRRTPSDGAL 851 900 ENSBTAP00000045078/1-949 GQRGAPEPMG PGPGPRDPLD FPRLPDPQAL FPTRRRPPEF PGRPTTLTFA BACU008294/1-881 GSGGRPSP-- --PAPALVSE APRAQGAE-- ----KGPSPV PS-PKTYVAA ENSP00000253055/1-954 GQRGPPEPAG HGPGPRDLLD FPRLPDPQAL FPARRRPPEF PGRPTTLTFA bmy_11277T0/1-624 GQRGAPAPTG PGPGE----- ---------- ---------- ---------- ENSTTRP00000000727/1-948 GQRGAPEPTG PGLGPRDPLD FPRLPDPQGL FPTRRRPPEF PGRPTTLTFA 901 950 ENSBTAP00000045078/1-949 PRPRPASSRP RLDPWKLVSF GQTLSISPPS RPDTPESPGL PSMQPTLLDM BACU008294/1-881 PRRPPGC--- ---------- ---------- ---------- ---------- ENSP00000253055/1-954 PRPRPAASRP RLDPWKLVSF GRTLTISPPS RPDTPESPGP PSVQPTLLDM bmy_11277T0/1-624 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000727/1-948 PRPRPAASRP RLDPWKLVSF GQTLSISPPS RPDTPESPGP PSMQPTLLDM 951 1000 ENSBTAP00000045078/1-949 DMEGQSQDST VPLCGAHGSR BACU008294/1-881 ---------- ---------- ENSP00000253055/1-954 DMEGQNQDST VPLCGAHGSH bmy_11277T0/1-624 ---------- ---------- ENSTTRP00000000727/1-948 DMEGQSQDST VPLCGAHGSV