KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:56:45 2014  Check: 00 ..

 Name: ENSTTRP00000012657/1-202  Len:    231  Check:  46  Weight:  1.00
 Name: ENSBTAP00000045096/1-212  Len:    231  Check:  2309  Weight:  1.00
 Name: ENSP00000295702/1-183     Len:    231  Check:  8787  Weight:  1.00
 Name: bmy_03400T0/1-183         Len:    231  Check:  8267  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000012657/1-202  MLTLSSGFGA PRKALRVRAM RLLAFLALAL FAVTQAEEGA RLLASKSLLN 
ENSBTAP00000045096/1-212  ---------- ---------M RLLAFAVLAL FAVTQAEEGA RLLASKSLLN 
ENSP00000295702/1-183     ---------- ---------M RLLSFVVLAL FAVTQAEEGA RLLASKSLLN 
bmy_03400T0/1-183         ---------- ---------M RLLAFLALAL FAVTQAEEGA RLLASKSLLN 


                          51                                                 100
ENSTTRP00000012657/1-202  RYAVEGRDLT LQYNIYNVGS SAALDVELSD DSFPPEDFGI VSGMLNVKWD 
ENSBTAP00000045096/1-212  RYAVEGRDLT LQYNIYNVGS SAALDVELSD DSFPPEDFGI VSGMLNVKWD 
ENSP00000295702/1-183     RYAVEGRDLT LQYNIYNVGS SAALDVELSD DSFPPEDFGI VSGMLNVKWD 
bmy_03400T0/1-183         RYAVEGRDLT LQYNIYNVGS SAALDVELSD DSFPPEDFGI VSGMLNVKWD 


                          101                                                150
ENSTTRP00000012657/1-202  RIAPXXXXXX XXXXXXXXXX XXXXXSATIT YLAQEDGPVV IGFTSAPGQG 
ENSBTAP00000045096/1-212  RIAPASNVSH TVVLRPLKAG YFNFTSATVT YLAQEDGPVV IGFTSAPGQG 
ENSP00000295702/1-183     RIAPASNVSH TVVLRPLKAG YFNFTSATIT YLAQEDGPVV IGSTSAPGQG 
bmy_03400T0/1-183         RIAPASNVSH TVVLRPLKAG YFNFTSATIT YLAQEDGPVV IGFTSAPGQG 


                          151                                                200
ENSTTRP00000012657/1-202  GILAQREFDR RFSPHFLDWA AFGVMTLPSI GIPLLLWYSS KRKYDTPKTK 
ENSBTAP00000045096/1-212  GILAQREFDR RFSPHFLDWA AFGVMTLPSI GVPLLLWYSS KRKYDTPKTK 
ENSP00000295702/1-183     GILAQREFDR RFSPHFLDWA AFGVMTLPSI GIPLLLWYSS KRKYDTPKTK 
bmy_03400T0/1-183         GILAQREFDR RFSPHFLDWA AFGVMTLPSI GIPLLLWYSS KRKYDTPKTK 


                          201                                                250
ENSTTRP00000012657/1-202  KN-------- ---------- ---------- - 
ENSBTAP00000045096/1-212  RLSGASTALP AQEIQVLSRL QRESQMQCLL L 
ENSP00000295702/1-183     KN-------- ---------- ---------- - 
bmy_03400T0/1-183         KN-------- ---------- ---------- -