KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:45 2014 Check: 00 .. Name: ENSP00000408002/1-508 Len: 550 Check: 8482 Weight: 1.00 Name: ENSTTRP00000001030/1-508 Len: 550 Check: 6458 Weight: 1.00 Name: ENSBTAP00000045115/1-431 Len: 550 Check: 1572 Weight: 1.00 Name: bmy_06623T0/1-489 Len: 550 Check: 4199 Weight: 1.00 Name: BACU013696/1-450 Len: 550 Check: 4899 Weight: 1.00 // 1 50 ENSP00000408002/1-508 MPPKRNEKYK LPIPFPEGKV LDDMEGNQWV LGKKIGSGGF GLIYL----- ENSTTRP00000001030/1-508 MPPRRKEKYR LPVPLPEGKV LGDVEGKQWV LGKMIGSGGF GLIYL----- ENSBTAP00000045115/1-431 MPPRRKEKYK LPIPLPEGTV LDDMEGKQWV LGKLVGSGGF GLIYL----- bmy_06623T0/1-489 ---------- ---------- ---MEGKQWV LGKMIGSGGF GLIYI----- BACU013696/1-450 ---------- -MATFCTWAL PAVGQWAPWA AKVR-----F RLSLIVDYPS 51 100 ENSP00000408002/1-508 AFPTNKPEKD ARHVVKVEYQ ENGPLFSELK FYQRVAKKDC IKKWIERKQL ENSTTRP00000001030/1-508 AFPVNNPDKD ARHVIKVEYQ ENGPLFSEL- FYQRAAKRDC IKKWXXXXXX ENSBTAP00000045115/1-431 AFPTNKPDKD ARHVIKVEYQ ENGPLFSELK FYQRAAKKDC IKKWIELKKL bmy_06623T0/1-489 AFPINNPDKD ARHVIKVEYQ ENGPLFSELK FYQRVAKKDC IKKWIELKQL BACU013696/1-450 SFPINNPDKD ARHVIKVEYQ ENGPLFSELK FYQRVAKKDC IKKWIELKQL 101 150 ENSP00000408002/1-508 DYLGIPLFYG SGLTEFKGRS YRFMVMERLG IDLQKISGQN GTFKKSTVLQ ENSTTRP00000001030/1-508 XXXXXXXXXX XXXXXXXXXX YRFMVMERLG IDLQKISDQN GTFKKSTVLQ ENSBTAP00000045115/1-431 DYLGIPLFYG SGITEFKGKS YRFMVMERLG IDLQKISDQN GTFKKSTVLQ bmy_06623T0/1-489 DYLGIPQFYG SGITEFKGKS YRFMVMERLG IDLQKISDQN GTFKKSTVLQ BACU013696/1-450 DYLGIPQFYG SGITEFKGKS YRFMVMERLG IDLQKISDQN GTFKKSTVLQ 151 200 ENSP00000408002/1-508 LGIRMLDVLE YIHENEYVHG DIKAANLLLG YKNPDQVYLA DYGLSYRYCP ENSTTRP00000001030/1-508 LGIRMXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVYLA DYGLSYRYCP ENSBTAP00000045115/1-431 LGIRMLDVLE YIHENEYVHG DIKAANLLLG YRNPDRVYLA DYGLSYRYCP bmy_06623T0/1-489 LGIRMLDVLE YIHENEYVHA DIKAANLLLG YRNPHQVYLA DYGLSYRYCP BACU013696/1-450 LGIRMLDVLE YIHENEYVHA DIKAANLLLG YRNPHQVYLA DYGLSYRYCP 201 250 ENSP00000408002/1-508 NGNHKQYQEN PRKGHNGTIE FTSLDAHKGV ALSRRSDVEI LGYCMLRWLC ENSTTRP00000001030/1-508 NGNHKQYQEN PRKSHNGTIE FTSLHAHKGV ALSRRSDLEI LGYCLLRWLC ENSBTAP00000045115/1-431 NGNHKQYQEN PKKGHNGTIE FTSLDAHKGV ALSRRSDLEI LGYCLLRWLC bmy_06623T0/1-489 NGNHKQYQEN PRKSHNGTIE FTSLDAHKGV ALSRRSDLEI LGYCLLRWLC BACU013696/1-450 NGNHKQYQEN PRKSHNGTIE FTSLDAHKGV ALSRRGDLEI LGYCLLRWLC 251 300 ENSP00000408002/1-508 GKLPWEQNLK DPVAVQTAKT NLLDELPQSV LKWAPSGSSC C---EIAQFL ENSTTRP00000001030/1-508 GRLPWEQNLE DPVAVQTAKT NLLDELPESV LKWAPSGSSC C---EIAQYL ENSBTAP00000045115/1-431 GRLPWERNLQ DPVAVQAAKT NLLDELPESV LQWAPSGSSC R---EIAQYL bmy_06623T0/1-489 GRLPWEQNLE DPVAVQTAKT NLLDELPESV LKWAPSGSSC PKSGEIAQYL BACU013696/1-450 GRLPWEQNLE DPVAVQAAKT NLLDELPESV LKWAPSGSSC R---EIAQYL 301 350 ENSP00000408002/1-508 VCAHSLAYDE KPNYQALKKI LNPHGIPLGP LDFSTKGQSI NVHTPNSQ-- ENSTTRP00000001030/1-508 VCAHNLAYDE KPNYQMLKKI LNPSGIPLGP LEFSPKGESL NVRTPNNQ-- ENSBTAP00000045115/1-431 VCAHNLAYDE KPDYQMLKKI LNPSGIPLGP LEFYTKGDSL NTHAPDNQKV bmy_06623T0/1-489 VCAHNLAYDE KPDYQMLKKI LNPSGIPLGP LEFSPKGESL NVRTPNNQ-- BACU013696/1-450 VCAHNLAYDE KPDYQMLKKI LNPSGIPLGP LEFSPEGESL NVRTPNNQ-- 351 400 ENSP00000408002/1-508 ---------- ---------- ---------- -KVDSQKAAT KQVNKAHNRL ENSTTRP00000001030/1-508 ---------- ---------- ---------- -KVDSRKAAT KQVNQMQNRL ENSBTAP00000045115/1-431 RRGDPEEIPL VQGKEQRLRF AGAALKRYPT SKVDSRKAEA KQAYQVQNML bmy_06623T0/1-489 ---------- ---------- ---------- -KVDSRKAAT KQVNQMQNRL BACU013696/1-450 ---------- ---------- ---------- -KVDSRKAAT KQVNQMQNRL 401 450 ENSP00000408002/1-508 IEKKVHSERS AESCATW-KV QKEEKLIGLM NNEAAQESTR RRQKYQESQE ENSTTRP00000001030/1-508 LEKKGHSEKS AESCATWRKV QEEEKLTGLS NSETAQEITR RRQKYCESQE ENSBTAP00000045115/1-431 VGKKGHSDRS AESRTPRRKV QEEEKLTGVR NSETVQ---- ---------- bmy_06623T0/1-489 LEKKGHSERS AESCATWRKV QEEEKLTGLF NSETVQESTR RRQKYCESQE BACU013696/1-450 LEKKGPSERS AESCATWRKV QEEEKLTGLF NSETAQESTR RRQKYCESQE 451 500 ENSP00000408002/1-508 PLNEVNSFPQ KISYTQFPNS FYEPHQDFTS PDIFKKSRSP SWYKYTSTVS ENSTTRP00000001030/1-508 FLNGVKSSPQ KSSCIQFPNS FYEPHQDFTS PDMFNKSSSP SCYTSTSTTG ENSBTAP00000045115/1-431 ---------- ----VVY--- ---------- ---------- ---------- bmy_06623T0/1-489 FLNEVKSSPQ KSSGIQFPSS FYEPHQDFTS PDTFNKSSSP SWYTYTSTTG BACU013696/1-450 FLNEVKSSPQ KFSSIQFPSS FYEPHQDFTS PDMFNKSSSP SWYTYTSTTD 501 550 ENSP00000408002/1-508 TGITDLESST GLWPTISQFT LSEETNADVY YYRIIIPVLL MLVFLALFFL ENSTTRP00000001030/1-508 MEVTELDSST GFWLTISQFT LSEEIKADVY YYGFTILLLL ILVCLALYFL ENSBTAP00000045115/1-431 ---------- ---------- ---------- ---------- ---------- bmy_06623T0/1-489 MEVTELDSST GFWLTISQFT LSEEIKADVY YYGFTILLLL ILVCLALYFL BACU013696/1-450 IK-------- ---------- ---------- ---------- ----------