KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:56:46 2014 Check: 00 .. Name: ENSTTRP00000000917/1-844 Len: 860 Check: 6740 Weight: 1.00 Name: ENSBTAP00000045132/1-831 Len: 860 Check: 9215 Weight: 1.00 Name: bmy_03293T0/1-860 Len: 860 Check: 7149 Weight: 1.00 Name: BACU017300/1-856 Len: 860 Check: 740 Weight: 1.00 // 1 50 ENSTTRP00000000917/1-844 MFALGLPFLA LLVASVESHL GVLGPKNVSQ KDAEFERTYV DEVNSELVNI ENSBTAP00000045132/1-831 MFALGLPFWA LLVASVESHL GVLGPKNVSQ KDAEFERTYV DEVNSELVNI bmy_03293T0/1-860 MFALGLPFLA LLVASVESHL GVLGPKNVSQ KDAEFERAYV DEVNSELVNI BACU017300/1-856 MFALGLPFLA LLVASVESHL GVLGPKNVSQ KDAEFERTYV DEVNSELVNI 51 100 ENSTTRP00000000917/1-844 YTFNHTVTRN RXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000045132/1-831 YTFNHTVTRN RTEGVRVSVN VLNKQKGAPL LFVVRQKEAV VSFQVPLILR bmy_03293T0/1-860 YTFNHTVTRN RTEGVRVSVN VLNKQKGAPL LFVVRQKEAV VSFQVPLILR BACU017300/1-856 YTFNHTVTRN RTEGVRVSVN VLNKQKGAPL LFVVRQKEAV VSFQVPLILR 101 150 ENSTTRP00000000917/1-844 XXFQRKYLYQ KVERTLCQPP TKNESEVQFF YVDVSTLSPV NTTYQLRVSR ENSBTAP00000045132/1-831 GLFQRKYLYQ KVERTLCQPP TKNESEVQFF YVDVSTLSPV NTTYQLRVSR bmy_03293T0/1-860 GMFQRKYLYQ KVERTLCQPP TKNESEVQFF YVDVSTLSPI NTTYQLRVSR BACU017300/1-856 GMFQRKYLYQ KVERTLCQPP TKNESEVQFF YVDVSTLSPI NTTYQLRVSR 151 200 ENSTTRP00000000917/1-844 MDDFVLRTGE QFSFNTTAAQ PQYFKYEFPE GVDSVIVKVT SNKAFPCSVI ENSBTAP00000045132/1-831 MDDFVLRTGE PFSFNTTAAQ PQYFKYEFPE GVDSVIVKVA SNTAFPCSVI bmy_03293T0/1-860 MDDFVLRTGE QFSFNTTAAQ PQYFKYEFPE GVDSVIVKVT SNKAFPCSVI BACU017300/1-856 MDDFVLRTGE QFSFNTTAAQ PQYFKYEFPE GVDSVIVKVT SNKAFPCSVI 201 250 ENSTTRP00000000917/1-844 SIQDVLCPVY DLDNNVAFIG MYQTMTKKAA ITVQRKDFPS NSFYVVVVVK ENSBTAP00000045132/1-831 SIQDVLCPVY DLDNNVAFIG MYQTMTKKAA ITVQRKDFPS NSFYVVVVVK bmy_03293T0/1-860 SIQDVLCPVY DLDNNVAFIG MYQTMTKKAA ITVQRKDFPS NSFYVVVVVK BACU017300/1-856 SIQDVLCPVY DLDNNVAFIG MYQTMTKKAA ITVQRKDFPS NSFYVVVVVK 251 300 ENSTTRP00000000917/1-844 TEDQACGGSL PFYPFVEDEP VDQGHRQKTL SVLVSRAVTS EAYVGGMLFC ENSBTAP00000045132/1-831 TEDQACGGSL PFYPFIEDEP VDQGHRQKTL SVLVSRAVTS EAYVGGMLFC bmy_03293T0/1-860 TEDQACGGSL PFYPFIEDEP VDQGHRQKTL SVLVSRAVTS EAYVGGMLFC BACU017300/1-856 TEDQACGGSL PFYPFIEDEP VDQGHRQKTL SVLVSRAVTS EAYVGGMLFC 301 350 ENSTTRP00000000917/1-844 LGIFLSFYLL TVLLACWENW RQRKKSLLVA VDRACPES-- --GHPRVLAD ENSBTAP00000045132/1-831 LGIFLSFYLL TVLLACWENW RQRKKSLLVA VDRACPES-- --GHPRVLAD bmy_03293T0/1-860 LGIFLSFYLL TVLLACWENW RQRKKSLLVA VDRACPESAS LLGHPRVLAD BACU017300/1-856 LGIFLSFYLL TVLLACWENW RQRKKSLLVA VDRACPES-- --GHPRVLAD 351 400 ENSTTRP00000000917/1-844 SFPGSSPYEG YNYGSFENGS GSTGSTDGLV GSAGPGDLSY NYQGHDQFKR ENSBTAP00000045132/1-831 SFPGSSPYDG YNYGSFENGS GSTGSTDGPV DSAGPGDLSY NYP------- bmy_03293T0/1-860 SFPGSSPYEG YNYGSFENGS GSTGSTDGLV GSAGPGDLSY NYQGHDQFKR BACU017300/1-856 SFPGSSPYEG YNYGSFENGS GSTGSTDGLV GSAGPGDLSY NYQGHDQFKR 401 450 ENSTTRP00000000917/1-844 RLPFGQMRQL CIAMDHSLDP VGTRPRLDSM SSVEEDDYDT LADIDSDKNV ENSBTAP00000045132/1-831 ---------- --------DP PGTRPRLDSM SSVEEDDYDT LADVDSDKNV bmy_03293T0/1-860 RLPFGQMRQL CIAMDHSLDP VGTRPRLDSM SSVEEDDYDT LADIDSDKNV BACU017300/1-856 RLPFGQMRQL CIAMDHSLDP VGTRPRLDSM SSVEEDDYDT LADIDSDKNV 451 500 ENSTTRP00000000917/1-844 IRTKQYLCVA DLARKDKRVL RKKYQIYFWN IATIAVFYAL PVVQLVITYQ ENSBTAP00000045132/1-831 IRTKQYLYVA DLARKDKRVL RKKYQIYFWN IATIAVFYAL PVVQLVITYQ bmy_03293T0/1-860 IRTKQYLCVA DLARKDKRVL RKKYQIYFWN IATIAVFYAL PVVQLVITYQ BACU017300/1-856 IRTKQYLCVA DLARKDKRVL RKKYQIYFWN IATIAVFYAL PVVQLVITYQ 501 550 ENSTTRP00000000917/1-844 TVVNVTGNQD ICYYNFLCAH PLGNLSAFNN ILSNLGYILL GLLFLLVILQ ENSBTAP00000045132/1-831 TVVNVTGNQD ICYYNFLCAH PLGNLSAFNN ILSNLGYILL GLLFLLIILQ bmy_03293T0/1-860 TVVNVTGNQD ICYYNFLCAH PLGNLSAFNN ILSNLGYILL GLLFLLIILQ BACU017300/1-856 TVVNVTGNQD ICYYNFLCAH PLGNLSAFNN ILSNLGYILL GLLFLLIILQ 551 600 ENSTTRP00000000917/1-844 REINHNRALL RNDLYALECG IPKHFGLFYA MGTALMMEGL LSACYHVCPN ENSBTAP00000045132/1-831 REINHNRALL RNDLCALECG IPKHFGLFYA MGTALMMEGL LSACYHVCPN bmy_03293T0/1-860 REINHNRALL RNDLYALECG IPKHFGLFYA MGTALMMEGL LSACYHVCPN BACU017300/1-856 REINHNRALL RNDLYALECG IPKHFGLFYA MGTALMMEGL LSACYHVCPN 601 650 ENSTTRP00000000917/1-844 YTNFQFDTSF MYMIAGLCML KLYQKRHPDI NASAYSAYAC LAIVIFFSVL ENSBTAP00000045132/1-831 YTNFQFDTSF MYMIAGLCML KLYQKRHPDI NASAYSAYAC LAIVIFFSVL bmy_03293T0/1-860 YTNFQFDTSF MYMIAGLCML KLYQKRHPDI NASAYSAYAC LAIVIFFSVL BACU017300/1-856 YTNFQFDTSF MYMIAGLCML KLYQKRHPDI NASAYSAYAC LAIVIFFSVL 651 700 ENSTTRP00000000917/1-844 GVVFGKGNTA FWVIFSVIHI IATLLLSTQL YYMGRWKLDS GICRRILHVL ENSBTAP00000045132/1-831 GVVFGKGNTA FWIIFSVIHI TATLLLSTQL YYMGRWKLDS GICRRILHVL bmy_03293T0/1-860 GVVFGKGNTA FWVIFSVIHI IATLLLSTQL YYMGRWKLDS GICRRILHVL BACU017300/1-856 GVVFGKGNTA FWVIFSVIHI IATLLLSTQL YYMGRWKLDS GICRRILHVL 701 750 ENSTTRP00000000917/1-844 YTDCIRQCSG PLYVDRMVLL VMGNIINWSL AAYGLIMRPN DFASYLLAIG ENSBTAP00000045132/1-831 YTDCIRQCSG PLYVDRMVLL VMGNIINWSL AAYGLIMRPN DFASYLLAIG bmy_03293T0/1-860 YTDCIRQCSG PLYVDRMVLL VMGNIINWSL AAYGLIMRPN DFASYLLAIG BACU017300/1-856 YTDCIRQCSG PLYVDRMVLL VMGNIINWSL AAYGLIMRPN DFASYLLAIG 751 800 ENSTTRP00000000917/1-844 ICNLLLYFAF YIIMKLRSGE RIKLIPLLCI ICTSVVWGFA LFFFFQGLST ENSBTAP00000045132/1-831 ICNLLLYFAF YIIMKLRSGE RIKLIPLLCI VCTSVVWGFA LFFFFQGLST bmy_03293T0/1-860 ICNLLLYFAF YIIMKLRSGE RIKLIPLLCI ICTSVVWGFA LFFFFQGLST BACU017300/1-856 ICNLLLYFAF YIIMKLRSGE RIKLIPLLCI ICTSVVWGFA LFFFFQGLST 801 850 ENSTTRP00000000917/1-844 WQKTPAESRE HNRDCILLDF FDDHDIWHFL SSIAMFGSFL VCGGCPEP-- ENSBTAP00000045132/1-831 WQKTPAESRE HNRDCILLDF FDDHDIWHFL SSIAMFGSFL VLLTLDDDLD bmy_03293T0/1-860 WQKTPAESRE HNRDCILLDF FDDHDIWHFL SSIAMFGSFL VLLTLDDDLD BACU017300/1-856 WQKTPAESRE HNRDCILLDF FDDHDIWHFL SSIAMFGSFL VLLTLDDDLD 851 900 ENSTTRP00000000917/1-844 ---------- ENSBTAP00000045132/1-831 TVQRDKIYVF bmy_03293T0/1-860 TVQRDKIYVF BACU017300/1-856 TVQRDKIYVF