KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:56:47 2014 Check: 00 .. Name: BACU015316/1-788 Len: 789 Check: 1105 Weight: 1.00 Name: ENSP00000307423/1-447 Len: 789 Check: 3445 Weight: 1.00 Name: bmy_06158T0/1-446 Len: 789 Check: 8781 Weight: 1.00 Name: ENSBTAP00000045192/1-452 Len: 789 Check: 7215 Weight: 1.00 // 1 50 BACU015316/1-788 MKLHCEVEVV SRHLPALGLR NRGKGVRAVL SLCQQAPRTQ PGPRAGGERG ENSP00000307423/1-447 ---------- ---------- ---------- ---------- ---------- bmy_06158T0/1-446 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045192/1-452 ---------- ---------- ---------- ---------- ---------- 51 100 BACU015316/1-788 GQHPACLFIS TLKDKFGTRY ELKENIEQFF TKFVDEGKAT VRLKEPPVDI ENSP00000307423/1-447 ---------- ---------- ---------- ---------- ---------- bmy_06158T0/1-446 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045192/1-452 ---------- ---------- ---------- ---------- ---------- 101 150 BACU015316/1-788 CLSKANSSSL KGFLSAMRLA HRGCDIEAPL LTLTPVKTSE FEKFKTKMVI ENSP00000307423/1-447 ---------- ---------- ---------- --------MR FRIYKRKVLI bmy_06158T0/1-446 ---------- ---------- ---------- --------MR FRIYKRKVLI ENSBTAP00000045192/1-452 ---------- ---------- ---------- --LPAPETMR FRIYKRKVLI 151 200 BACU015316/1-788 TSKKDYPLSK NFPYSLEHLQ TSYCGLVRVD MRMLSLKNLR KLDLSHNHIK ENSP00000307423/1-447 LT-------- --------LV VAACGFV--- ---------- ---------- bmy_06158T0/1-446 LT-------- --------LV VAACGFV--- ---------- ---------- ENSBTAP00000045192/1-452 LM-------- --------LV VAACGFV--- ---------- ---------- 201 250 BACU015316/1-788 KLPATIGDLI HLQELNLNDN HLESFSVALC QSTLQKSLRS LDLSKNKIKA ENSP00000307423/1-447 ---------- ---------- ---------- -------LWS SNGRQRKNEA bmy_06158T0/1-446 ---------- ---------- ---------- -------LWS SNGRQRKNEA ENSBTAP00000045192/1-452 ---------- ---------- ---------- -------LWS SNGRQRKNEA 251 300 BACU015316/1-788 LPVQFCQLQE LTDLKLDDNE LIQLPFKMGH LTNLRFLSAA RNKLPFLPSE ENSP00000307423/1-447 LAP------- ---------- ---------- ---------- ----PLLDAE bmy_06158T0/1-446 LSP------- ---------- ---------- ---------- ----PLLDAE ENSBTAP00000045192/1-452 LAP------- ---------- ---------- ---------- ----PLLDAD 301 350 BACU015316/1-788 FKNLSLEYLD LFGNIFEQPQ VLPVIKLQMP LTLLESSART VLYNRKGKNA ENSP00000307423/1-447 ---------- ---------- ---------- ---------- ---------- bmy_06158T0/1-446 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045192/1-452 ---------- ---------- ---------- ---------- ---------- 351 400 BACU015316/1-788 PDVGTEPERQ RCGPIGSGRP RPCVSRLDRE APTDSPRGGA EGCGPGDRGA ENSP00000307423/1-447 ------PAR- --GAGGRGGD HPSVA----- ---------- -------VGI bmy_06158T0/1-446 ------PAR- --GAGARAGD HPAVS----- ---------- -------VGI ENSBTAP00000045192/1-452 ------PVR- --GAGARAGD HPAVS----- ---------- -------VGI 401 450 BACU015316/1-788 RRASRWLSGQ SPPECGEVAA APHPEVDNLT LRYRSLVYQL NFDQTVRNVG ENSP00000307423/1-447 RR------VS NVSAASLVPA VPQPEADNLT LRYRSLVYQL NFDQTLRNVD bmy_06158T0/1-446 RR------GS NESAAPLVAA APHPEVDNLT LRYRSLVYQL NFDQTVRNVG ENSBTAP00000045192/1-452 RR------GS NESAAPLVAA APQPEVDNLT LRYRSLVYQL NFDQTLRNVD 451 500 BACU015316/1-788 KAGSWAPREL ALVVQVHNRP EYLKLLLDSL RKAQGIDNVF VIFSHDFWST ENSP00000307423/1-447 KAGTWAPREL VLVVQVHNRP EYLRLLLDSL RKAQGIDNVL VIFSHDFWST bmy_06158T0/1-446 KAGSWAPREL ALVVQVHNRP EYLKLLLDSL RKAQGIDNVF VIFSHDFWST ENSBTAP00000045192/1-452 KAASWTPREL ALVVQVHNRP EYLKLLLDSL RKAQGIDDVL VIFSHDFWST 501 550 BACU015316/1-788 EINQLIAGVD FCPVLQVFFP FSIQLYPNEF PGTDPRDCPR DVEKNAALQM ENSP00000307423/1-447 EINQLIAGVN FCPVLQVFFP FSIQLYPNEF PGSDPRDCPR DLPKNAALKL bmy_06158T0/1-446 EINQLIAGVD FCPVLQVFFP FSIQLYPNEF PGTDPRDCPR DVEKNAALQM ENSBTAP00000045192/1-452 EINQLIAGVD FCPVLQVFFP FSIQLYPNEF PGTDPRDCPR DMEKNAALRM 551 600 BACU015316/1-788 GCINAEYPDS FGHYREAKFS QTKHHWWWKL HFVWERVKVL RDYAGLILFL ENSP00000307423/1-447 GCINAEYPDS FGHYREAKFS QTKHHWWWKL HFVWERVKIL RDYAGLILFL bmy_06158T0/1-446 GCINAEYPDS FGHYREAKFS QTKHHWWWKL HFVWERVKVL RDYAGLILFL ENSBTAP00000045192/1-452 GCINAEYPDS FGHYREAKFS QTKHHWWWKL HFVWERVKVL RDYAGLILFL 601 650 BACU015316/1-788 EEDHYLAPDF YHVFKKMWQL KQQECPECDV LSLGTYTAIR SFYGVADKVD ENSP00000307423/1-447 EEDHYLAPDF YHVFKKMWKL KQQECPECDV LSLGTYSASR SFYGMADKVD bmy_06158T0/1-446 EEDHYLAPDF YHVFKKMWQL KQQECPECDV LSLGTYTAIR SFYGVADKVD ENSBTAP00000045192/1-452 EEDHYLAPDF YHVFKKMWKL KQLECPECDV LSLGTYTAIR NFYDVADKVD 651 700 BACU015316/1-788 VKTWKSTEHN MGLALTRDAY QKLIECTDTF CTYDDYNWDW TLQYLTVSCL ENSP00000307423/1-447 VKTWKSTEHN MGLALTRNAY QKLIECTDTF CTYDDYNWDW TLQYLTVSCL bmy_06158T0/1-446 VKTWKSTEHN MGLALTRDAY QKLIECTDTF CTYDDYNWDW TLQYLTVSCL ENSBTAP00000045192/1-452 VKTWKSTEHN MGLALTREAY QKLIECTDTF CTYDDYNWDW TLQYLTVSCL 701 750 BACU015316/1-788 PKFWKVLVPQ VPRIFHAGDC GMHHQKTCRP STQSAQIESL LNNNKQYLFP ENSP00000307423/1-447 PKFWKVLVPQ IPRIFHAGDC GMHHKKTCRP STQSAQIESL LNNNKQYMFP bmy_06158T0/1-446 PKFWKVLVPQ VPRIFHAGDC GMHHQKTCRP STQSAQIESL LNNNKQYLFP ENSBTAP00000045192/1-452 PKFWKVLVPQ VPRIFHAGDC GMHHQKTCRP ATQSAQLESL LNNNKQYLFP 751 800 BACU015316/1-788 ETLTISEKF- MAALSPPRKN GGWGDIRDHE LCKSYRRLQ ENSP00000307423/1-447 ETLTISEKFT VVAISPPRKN GGWGDIRDHE LCKSYRRLQ bmy_06158T0/1-446 ETLTISEKF- MAALSPPRKN GGWGDIRDHE LCKSYRRLQ ENSBTAP00000045192/1-452 ETLTISEKF- MTSLSPPRKN GGWGDIRDHE LCKSYRRLQ