KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:47 2014 Check: 00 .. Name: bmy_01865T0/1-442 Len: 596 Check: 3391 Weight: 1.00 Name: ENSP00000219406/1-525 Len: 596 Check: 3022 Weight: 1.00 Name: ENSBTAP00000045224/1-489 Len: 596 Check: 7088 Weight: 1.00 Name: BACU009263/1-528 Len: 596 Check: 6990 Weight: 1.00 Name: ENSTTRP00000008603/1-491 Len: 596 Check: 2847 Weight: 1.00 // 1 50 bmy_01865T0/1-442 -MREVWTGHA CSLLGLTGPK VGELWPGGS- ---------- ---------R ENSP00000219406/1-525 MSRQLLPVLL LLLLRASCPW GQEQGARSPS EEPPEEEIP- ---------K ENSBTAP00000045224/1-489 MDGQFLPV-L VLLLGASGLC GQGLGPRGPL EEPPEEKPPE EKPPEEEPPE BACU009263/1-528 MDGQLLPV-L LLLLGASGLW GRGPGPEGAL EEPPEEEPP- ----EEEPPE ENSTTRP00000008603/1-491 ---------- ---------- -----PEGEL Q--------- ---------K 51 100 bmy_01865T0/1-442 GCG---WGHG GLGRSWPCPP D------APW CGHCKALAPE YSKAAALLAA ENSP00000219406/1-525 EDGILVLSRH TLGLALREHP ALLVEFYAPW CGHCQALAPE YSKAAAVLAA ENSBTAP00000045224/1-489 EDGVLVLSRQ TLGQALQEHP ALLVEFYAPW CGHCRALAPE YSKAAALLAA BACU009263/1-528 EDGILVLSRQ TLGLALREHP ALLVEFYAPW CGHCKALAPE YSKAAALLAT ENSTTRP00000008603/1-491 EDGIWVLSLQ TPCPALRERP DLLVGFYAPW CGHCKALAPE YSKAAALLAA 101 150 bmy_01865T0/1-442 ESAKVRLAKV DGPTEPELAE EFAVTEYPTL KFFRDGNHTH PEEYTGPWEA ENSP00000219406/1-525 ESMVVTLAKV DGPAQRELAE EFGVTEYPTL KFFRNGNRTH PEEYTGPRDA ENSBTAP00000045224/1-489 ESARVTLAKV DGPAEPELAE EFAVTEYPTL KFFREGNRTH PEEYTGPREA BACU009263/1-528 ESAKVRLAKV DGPAEPELAE EFAVTEYPTL KFFRDGNHTH PEEYTGPWEA ENSTTRP00000008603/1-491 ESAKVRLAKV DGPAEPELAE EFAVTKYPTL KFFLDGNHTH PEEYTGPWEA 151 200 bmy_01865T0/1-442 EGIAEWLRRR VGPSATRLED EEGARALIDA RDVVVIGFFQ DLQDKDVATF ENSP00000219406/1-525 EGIAEWLRRR VGPSAMRLED EAAAQALIGG RDLVVIGFFQ DLQDEDVATF ENSBTAP00000045224/1-489 EGIAEWLRRR VGPSARQLED EEDIRALTDT RDVVVVGFFQ DLQDRDVATF BACU009263/1-528 EGIAEWLRRR VGPRATGLED EEGARALIDA RDVVVIGFFQ DLQDKDVATF ENSTTRP00000008603/1-491 EGIAEWLRRR VGPSATRLED EEGAQALIDA RDVVVIGFFQ DLQDKDVATF 201 250 bmy_01865T0/1-442 LALAQDALDM SFGFTNQPQL FQKFGLTKDT VVLFKKYDEG RADFPVDEEL ENSP00000219406/1-525 LALAQDALDM TFGLTDRPRL FQQFGLTKDT VVLFKKFDEG RADFPVDEEL ENSBTAP00000045224/1-489 LGLAQDALDM TFGLTDRPQL FQKFGLTKDT VVLFKKYDEG RADFPVDKEL BACU009263/1-528 LALAQDALDV SFGLTNQPQL FQKFGLTKDT VVLFKKYDEG RADFPVDEEL ENSTTRP00000008603/1-491 LALAQDALDM SFGLTNQPQL FQKFGLTKDT VVLFKKYDEG RADFPVDEEL 251 300 bmy_01865T0/1-442 GLDQGDLSRF LLTHSMHLVT EFNSQVSGAG GQVRVGAEDG RRAQEQPTSA ENSP00000219406/1-525 GLDLGDLSRF LVTHSMRLVT EFNSQTSA-- ---------- ---------- ENSBTAP00000045224/1-489 GLDQGDLSRF LLTHSMHLVT EYSSETSS-- ---------- ---------- BACU009263/1-528 GLDQGDLSRF LLTHSMHLVT EFNSQTSR-- ---------- ---------- ENSTTRP00000008603/1-491 GLDQGDLSRF LLTHSMHLVT EFNSQTSR-- ---------- ---------- 301 350 bmy_01865T0/1-442 TCPRRRPVRS LQPRSLTTCC CSSTRRWPPT GSCWRASGRR LPASGGRYWL ENSP00000219406/1-525 --------KI FAARILNHLL LFVNQTLAAH RELLAGFGEA APRFRG---- ENSBTAP00000045224/1-489 --------KI FEAKILNHLL LFINQTLDAH RELLAGFREA APPFRG---- BACU009263/1-528 --------KI FAARILNHLL LFVNQTLAPH RELLAGFREA APGFLG---- ENSTTRP00000008603/1-491 --------KI FAAGILNHLL LFVNQTLAPH RELLAGFREA APSFRG---- 351 400 bmy_01865T0/1-442 GPGWGVGWRW GGGAPTRTPC WQVLFVVVDV GANNDHVLQY FGLKAEEAPT ENSP00000219406/1-525 ---------- ---------- -QVLFVVVDV AADNEHVLQY FGLKAEAAPT ENSBTAP00000045224/1-489 ---------- ---------- -QVLFVVVDV GADNDHVLQY FGLKAQEAPT BACU009263/1-528 ---------- ---------- -QVLFVVVDV GANNDHVLQY FGLKAEEAPT ENSTTRP00000008603/1-491 ---------- ---------- -QVLFVVVDV GASNDHVLQY FGLKAEEAPT 401 450 bmy_01865T0/1-442 LRFINIETTK KYMPADRGPV TATSVAAFCR AVLGGEVKVR CWTAQLGGGG ENSP00000219406/1-525 LRLVNLETTK KYAPVDGGPV TAASITAFCH AVLNGQVKPY LLSQEI---- ENSBTAP00000045224/1-489 LRFINIETTK KYAPEHGAPV TAATITDFCR TVLGGGVKPY HLSQEV---- BACU009263/1-528 LRFINTETTK KYMPADRGPV TATSVAAFCH AVLGGEVKPY HLSQEV---- ENSTTRP00000008603/1-491 LRFINIETTK KYMPADRGPV TATSVAAFCH AVLGGEVKPY RLSQEV---- 451 500 bmy_01865T0/1-442 ASSGSWERPP IKHLAGS--- ---------- ---------- ---------- ENSP00000219406/1-525 --PPDWDQRP VKTLVGKNFE QVAFDETKNV FVKFYAPWCT HCKEMAPAWE ENSBTAP00000045224/1-489 --PPDWDQRP VKTLVGKNFE QVAFDETKNV FIKFYAPWCA HCKEMAPAWE BACU009263/1-528 --PPDWDQRP VKTLVGKNFE QVAFDETKNV FIKFYAPWCT HCKEMAPAWE ENSTTRP00000008603/1-491 --PPDWDQRP VKTLVGKNFE QVAFDETKNV FIKFYAPWCT HCKEMAPAWE 501 550 bmy_01865T0/1-442 ---------- ---------- ---------- --PSLIT--- ---------- ENSP00000219406/1-525 ALAEKYQDHE DIIIAELDAT ANELDAFAVH GFPTLKYFPA GPGRKVIEYK ENSBTAP00000045224/1-489 ELAEKYRDHE DVIIAELDAT ANELEAFPVH GFPTLKYFPA GPGRKVIDYK BACU009263/1-528 ALAEKYRDHE DIVIAELDAT ANELEALPVH GFPTLKYFPA GPGRKVIEYK ENSTTRP00000008603/1-491 ALAEKYRDHE DIVIAELDAT ANELEALPVH SFPTLKYFPA GPGRKVIEYK 551 600 bmy_01865T0/1-442 ---------- ---------- ---------- ---------- ------ ENSP00000219406/1-525 STRDLETFSK FLDNGGVLPT EEPPEEPAAP FPEPPANSTM GSKEEL ENSBTAP00000045224/1-489 G--------- ---------- ---------- ---------- ------ BACU009263/1-528 GTRDLETFSK FLDSGGELPA EEPTEVPGAP FPEMPENTT- EPKDEL ENSTTRP00000008603/1-491 GTRDLETFSK FLDSGGELPA EEPTEVPGAP FPEMPENTT- EPKDEL