KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:56:47 2014  Check: 00 ..

 Name: ENSBTAP00000045245/1-113  Len:    193  Check:  7929  Weight:  1.00
 Name: ENSP00000278200/1-166     Len:    193  Check:  8016  Weight:  1.00
 Name: BACU008871/1-193          Len:    193  Check:  1561  Weight:  1.00
 Name: ENSTTRP00000002244/1-166  Len:    193  Check:  9624  Weight:  1.00
 Name: bmy_15482T0/1-107         Len:    193  Check:  3650  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000045245/1-113  MLRGVLGKTF RLVGYTIQYG CIAHCAFEYV GGVLVCSGPS MEPTIQNSDI 
ENSP00000278200/1-166     MLRGVLGKTF RLVGYTIQYG CIAHCAFEYV GGVVMCSGPS MEPTIQNSDI 
BACU008871/1-193          MLRGVLGKTF RLIGYTIQYG CIAHCAFEYV GGVVMCSGPS MEPTIHNSDI 
ENSTTRP00000002244/1-166  MLRGVLGKTF RLVGYTIQYG CIAHCAFEYV GGVVMCSGPS MEPTIQNSDV 
bmy_15482T0/1-107         MLRGVLGKTF RLVGYTIQYG CIAHCAFEYV GGVVMCSGPS MEPTIQNSDI 


                          51                                                 100
ENSBTAP00000045245/1-113  VFAENLSRHF YGIQRGDIVV AKSPSDPKSN ICKRVIGLEG DKILTSSPAG 
ENSP00000278200/1-166     VFAENLSRHF YGIQRGDIVI AKSPSDPKSN ICKRVIGLEG DKILTTSPSD 
BACU008871/1-193          VFAENLSRHF YGIQRGDIVI AKSPSDPKSN ICKRVIGLEG DKILSNSPSG 
ENSTTRP00000002244/1-166  VFAENLSRHF YGIQRGDIVI AKSPSDPKSN ICKRVIGLEG DKILSNSPSV 
bmy_15482T0/1-107         VFAENLSXHF CGIQRGDIVI AKSPSDPKSN ICKRVIGLEG DKILSNSPTG 


                          101                                                150
ENSBTAP00000045245/1-113  FFKSHSYGRR GGS------- ---------- ---------- ---------- 
ENSP00000278200/1-166     FFKSHSYVPM GHVWLEGDNL QNSTDSRCYG PIPYGLIRGR IFFKIW---P 
BACU008871/1-193          FFKSHSYVPV GHVWLEGDNL QNSTDSRYYG PVPYGLIRGR IFFKVILKTP 
ENSTTRP00000002244/1-166  FFKSHSYVPI GHVWLEGDNL QNSTDSRYYG PVPYGLIRGR IFFKIW---P 
bmy_15482T0/1-107         FFKSHSY--- ---------- ---------- ---------- ---------- 


                          151                                                200
ENSBTAP00000045245/1-113  ---------- ---------- ---------- ---------- --- 
ENSP00000278200/1-166     LSDFGFLRAS PNGHRFSDD- ---------- ---------- --- 
BACU008871/1-193          MKESSNAFAS PVDHTFYVLS SAKAALCNRT EQFRIANSTA KLT 
ENSTTRP00000002244/1-166  LSDFGFLRDS PNGHRFSDD- ---------- ---------- --- 
bmy_15482T0/1-107         ---------- ---------- ---------- ---------- ---