KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:56:52 2014  Check: 00 ..

 Name: ENSBTAP00000045318/1-238  Len:    239  Check:  5789  Weight:  1.00
 Name: ENSP00000440396/1-239     Len:    239  Check:  7782  Weight:  1.00
 Name: bmy_15512T0/1-198         Len:    239  Check:  8556  Weight:  1.00
 Name: BACU019730/1-239          Len:    239  Check:  7450  Weight:  1.00
 Name: ENSTTRP00000010016/1-238  Len:    239  Check:  7363  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000045318/1-238  MEKEKVNDE- KPDPENSLDF SEHFNQLELL ETHGHLIPTG TQSLWIGNSD 
ENSP00000440396/1-239     MEKEKGNDDG IPDQENSLDF SEHFNQLELL ETHGHLIPTG TQSLWVGNSD 
bmy_15512T0/1-198         MEKEKVNDDG KPDPENSLDF SEHFNQLELL ETHGHLIPTG TQSLW----- 
BACU019730/1-239          MEKEKVNDDG KPDPENSLDF SEHFNQLELL ETHGHLIPTG TQSLWVGNSD 
ENSTTRP00000010016/1-238  -EKEKVNDDG KPDPENSLDF SEHFNQLELL ETHGHLIPTG TQSLWVGNSD 


                          51                                                 100
ENSBTAP00000045318/1-238  DDEEQDEKTE EWYQLQEKKM EKDPSKLLLW AAEKNRLTTV QRLLSERATH 
ENSP00000440396/1-239     EDEEQDDKNE EWYRLQEKKM EKDPSRLLLW AAEKNRLTTV RRLLSEKATH 
bmy_15512T0/1-198         ---------- ---------- ---------- ------LTTV RRLLSEKAAH 
BACU019730/1-239          EDEEQDEKTE EWYQLQEKKM EKDPSKLLLW AAEKNRLTTV RRLLSEKATH 
ENSTTRP00000010016/1-238  EDEEQDEKTE EWYQLQEKKM EKDPSKLLLW AAEKNRLTTV RRLLSEKATH 


                          101                                                150
ENSBTAP00000045318/1-238  VNTRDEDKYT PLHRAAYNGH LDVVRELIAH GADVHAVTVD GWTPLHSACK 
ENSP00000440396/1-239     VNTRDEDEYT PLHRAAYSGH LDIVQELIAQ GADVHAVTVD GWTPLHSACK 
bmy_15512T0/1-198         VNTRDEDGYT PLHRAAYSGH LDVVRELIAH RADVRAVTVD GWTPLHSACK 
BACU019730/1-239          VNTRDEDGYT PLHRAAYSGH LDVVRELIAH RADVRAVTVD GWTPLHSACK 
ENSTTRP00000010016/1-238  VNTRDEDGYT PLHRAAYSGH LDVVRELIAH RADVHAVTVD GWTPLHSACK 


                          151                                                200
ENSBTAP00000045318/1-238  WNNARVASFL LQHDADVNAQ TKGLLTPLHL AAGNRDSKDT LELLLMNRYI 
ENSP00000440396/1-239     WNNTRVASFL LQHDADINAQ TKGLLTPLHL AAGNRDSKDT LELLLMNRYV 
bmy_15512T0/1-198         WNNTRVASFL LQHDADINAQ TKGLLTPLHL AAGNRDSKDT LELLLMNRYV 
BACU019730/1-239          WNNTRVASFL LQHDADINAQ TKGLLTPLHL AAGNRDSKDT LELLLMNRYI 
ENSTTRP00000010016/1-238  WNNTRVASFL LQHDADINAQ TKGLLTPLHL AAGNRDSKDT LELLLMNRYI 


                          201                                                250
ENSBTAP00000045318/1-238  KPGLKNSLEE TAFDIARRTG IYHYLFEIVE GCTNCSPQS 
ENSP00000440396/1-239     KPGLKNNLEE TAFDIARRTS IYHYLFEIVE GCTNSSPQS 
bmy_15512T0/1-198         KAGLKNNLEE TAFDIARRTS IYHYLFEIVE GCTNSSPQS 
BACU019730/1-239          KAGLKNNLEE TAFDIARRTS IYHYLFEIVE GCTNSSPQS 
ENSTTRP00000010016/1-238  KAGLKNNLEE TAFDIARRTS MYHYLFEIVE GCTNSSPQS