KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:52 2014 Check: 00 .. Name: ENSP00000359498/1-255 Len: 302 Check: 2713 Weight: 1.00 Name: ENSBTAP00000045355/1-282 Len: 302 Check: 7701 Weight: 1.00 Name: ENSTTRP00000000577/1-252 Len: 302 Check: 7445 Weight: 1.00 Name: bmy_04159T0/1-291 Len: 302 Check: 2292 Weight: 1.00 Name: BACU007776/1-196 Len: 302 Check: 6764 Weight: 1.00 // 1 50 ENSP00000359498/1-255 MSSHRRKAKG RNRRSH---- RAMRVAHLEL ----ATYELA A------TES ENSBTAP00000045355/1-282 MPTDRKSTRG RIRSRTRARI RALRRARSKK VNLGGESSAE NRAENPAMGS ENSTTRP00000000577/1-252 MPSKGQLSRG RNGRR----- RALRAARRKQ ----SSCQAA E------MVS bmy_04159T0/1-291 MLFEGQLMLG RTRSKT---- RALRGSRCKL ----SSCRAG KQEKNLAMGS BACU007776/1-196 MLFEGRLMLG RTWSKT---- RALQGSRCKL ----SSCQEG KQEKNLAMGW 51 100 ENSP00000359498/1-255 NPESSHPGYE AAMADRPQPG WRE------- -----SLKMR VSKPFGMLML ENSBTAP00000045355/1-282 QPRGS----- -MASAQQSRG QAASVHGVRG GTRRSTLKVW VSQRFGLFLL ENSTTRP00000000577/1-252 STSGSAPEDQ AIMADRPKPG PRA------- -----FLKVW ACKHSRLLLF bmy_04159T0/1-291 STSGSTPERQ AITADKPKPG PQASLRGIQA ETCHSLVKVW ARKHSGLLLF BACU007776/1-196 STSGSTPERQ AITADKPKPG PQGSLRGIQA ETRHSLVKAW ARKHSGLLLF 101 150 ENSP00000359498/1-255 SIWILLFVCY YLSYYLCSGS SYFVLANGHI LPNSENAHGQ SLEEDSALEA ENSBTAP00000045355/1-282 GFWFLLLLCF Y----MSTGY MDSVSANNYI LWSSENADGQ SLNETSALRS ENSTTRP00000000577/1-252 GVCAL--CCF Y--CYLSARF SNSVSPTENI LWSNENVNGQ PLEETAARET bmy_04159T0/1-291 GVWVLLLLLC Y--YYLSARF SNSVSPSEYI LWSNENANGQ PLEETAAWEA BACU007776/1-196 GVWVLLMLLY Y--YYLSA-- ---------- ---------- ---------- 151 200 ENSP00000359498/1-255 LLNFFFPTTC NLRENQVAKP CNELQDLSES ECLRHKCCFS SSGTTSFKCF ENSBTAP00000045355/1-282 LIRFFFPTTC VPVEGQVLTP CKQGQDLNKD ECLKYKCCYS SIETATVSCF ENSTTRP00000000577/1-252 LLSFFFPTTC IVQENQEIKP CRHLQDLSKS ECLRYKCCYS SSKTSKFNCF bmy_04159T0/1-291 LLSFFFPTTC XPKENQVVKP CNHLQDLSKS QCLGYKCCYS SSRTSNFNCF BACU007776/1-196 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000359498/1-255 APFRDVPKQM MQMFGLGAIS LILV-CLPIY CRSLFWRSEP ADDLQRQDNR ENSBTAP00000045355/1-282 APLRDKPTQM FRMFGFGAMS MVFLGCLPMY CCSFCWKSRW AGLLRRRFNR ENSTTRP00000000577/1-252 APLRDKPMQM FRMFGLGVIS ILILGCLLIC CYLLCQRSIW ANPLRRKVNR bmy_04159T0/1-291 APLKDKPTQM FRMFGLGVIS MIILGCLPIY CCLFCQRSTW ANPLRRKVNR BACU007776/1-196 -----KPTQM FRMFGLGVIS MIILGCLPIY CCLFCRRSTW ANPLRRKVNR 251 300 ENSP00000359498/1-255 VVTGLKKQRR KRKRKSEMLQ KAARGREEHG DE-------- ---------- ENSBTAP00000045355/1-282 TLKRLKKHRK KPKRDTEMLE TAV-DEEGYG DEKDQETTAL FSQ------- ENSTTRP00000000577/1-252 ILKGFKNRRH KPKRVAGTLG KAT-DEEGLG DEKE------ ---------- bmy_04159T0/1-291 ILKGLKNRRR KLKRNAETLG KAT-DEEGLG DEKEQETKGI AMWTCKLMQL BACU007776/1-196 ILKGLKNRRK KLKRNAETLG KAM-DVERLG DEKEQETKGN DNSI------ 301 350 ENSP00000359498/1-255 -- ENSBTAP00000045355/1-282 -- ENSTTRP00000000577/1-252 -- bmy_04159T0/1-291 YL BACU007776/1-196 --