KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:56:56 2014 Check: 00 .. Name: ENSP00000398211/1-1320 Len: 1493 Check: 8957 Weight: 1.00 Name: ENSBTAP00000045433/1-1305 Len: 1493 Check: 8200 Weight: 1.00 Name: BACU014614/1-1401 Len: 1493 Check: 904 Weight: 1.00 Name: bmy_01655T0/1-1433 Len: 1493 Check: 9088 Weight: 1.00 Name: ENSTTRP00000005776/1-1321 Len: 1493 Check: 2895 Weight: 1.00 // 1 50 ENSP00000398211/1-1320 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045433/1-1305 ---------- ---------- ---------- ---------- ---------- BACU014614/1-1401 MPMATVGSGA GARDRGTTSA YSPSRR---- ---------- ---------- bmy_01655T0/1-1433 CQGHRCRRGR SPRAGGSPRR LPRAARRWRP GPWPRSARAP VPGTAAPPAR ENSTTRP00000005776/1-1321 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000398211/1-1320 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045433/1-1305 ---------- ---------- ---------- ---------- ---------- BACU014614/1-1401 ---------- ---------- ---------- ---------- ----STTRAL bmy_01655T0/1-1433 TRPLGSRLPA PCHVGAWPRP PLTMTPLESG LLLRFQGRAL LQLQAARGAT ENSTTRP00000005776/1-1321 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000398211/1-1320 ---------- ---------- ----MSSNDS SLMAGIIYYS QEKYFHHVQQ ENSBTAP00000045433/1-1305 ---------- ---------- ---------- --MAGIIYYS KEKYFRHVQQ BACU014614/1-1401 SQLEEEQGLG EGAGQNRDGK GAGTIATVSS SSQAGIIYYS QEKYFRHVQQ bmy_01655T0/1-1433 GTLTRESRSA RHHQTRTRSR GCPEMSSNDS SLMAGIIYYS QEKYFRHVQQ ENSTTRP00000005776/1-1321 ---------- ---------- ----MSINDS SLMAGIIYYS QEKYFRHVQQ 151 200 ENSP00000398211/1-1320 AAAVGLEKFS NDPVLKFFKA YGVLKEEHIQ DAISDLESIR HHPDVSLCST ENSBTAP00000045433/1-1305 AAAVGLEKFN NDPVLQFFKA YGVLREEHIQ DAISSLESIR NHPDVSLCSI BACU014614/1-1401 AAAVGLEKFS NDPVLQFFKA YGVLREERIQ DAISSLESIQ NHPDVSLCSV bmy_01655T0/1-1433 AAAVGLEKFS NDPVLQFFKA YGVLREERIQ DAISSLESIQ NHPDVSLCSV ENSTTRP00000005776/1-1321 AAAVGLEKFS NDPVLQFFKA YGVLREERIQ DAISSLESIQ NHPDVSLCSV 201 250 ENSP00000398211/1-1320 MALIYAHKRC EIIDREAIQE LEYSLKEIRK TVSGTALYYA GLFLWLIGRH ENSBTAP00000045433/1-1305 MALIYAHKCC ETIDREAIQE LESSLKEVRK TASGTALYYA GLFLWLMGRH BACU014614/1-1401 MALIYAHKCC ETIDREAIQE LESSLKEIRK TASGTALYYA GLFLWLMGRH bmy_01655T0/1-1433 MALIYAHKCC ETIDREAIQE LESSLKEIRK TASGTALYYA GLFLWLMGRH ENSTTRP00000005776/1-1321 MALIYAHKCC ETIDREAIQE LESSLKEIRK TASGTALYYA GLFLWLMGRH 251 300 ENSP00000398211/1-1320 DKAKEYIDRM LKISRGFREA YVLRGWVDLT SDKPHTAKKA IEYLEQGIQD ENSBTAP00000045433/1-1305 DKAKEYIDRT LKISSSSREG YVLRGWVDLS SDKPHTVKKS IKYLEHGIQD BACU014614/1-1401 DKAKEYIDRT LKVSSSSREG YVLRGWVDLS SDKPHTVKKS IKYLEHGIQD bmy_01655T0/1-1433 DKAKEYIDRT LKVSSSSREG YVLRGWVDLS SDKPHTVKKS IKYLEHGIQD ENSTTRP00000005776/1-1321 DKAKEYIDRT LKVSSSSREG YVLRGWVDLS SDKPHTVKKS IKYLEYGIQD 301 350 ENSP00000398211/1-1320 TKDVLGLMGK AMYFMMQQNY SEALEVVNQI TVTSGSFLPA LVLKMQLFLA ENSBTAP00000045433/1-1305 TKDILGLMGK VMYFMILQNY SGALEVVNQI TVTCGSFLPA LVLKMQLFLA BACU014614/1-1401 TKDVLGLMGK ATYFMMLQNY SGALEVVNQI TVAWGSFLPA LVLKMRLFLA bmy_01655T0/1-1433 TKDVLGLMGK ATYFMMLQNY SGALEVVNQI TVAWGSFLPA LVLKMRLFLA ENSTTRP00000005776/1-1321 TKDVLGLMGK ATYFMMLQNY SGALEVVNQI TVAWGSFLPA LVLKMRLFLA 351 400 ENSP00000398211/1-1320 RQDWEQTVEM GHRILEKDES NIDACQILTV HELAREGNMT TVSSLKTQKA ENSBTAP00000045433/1-1305 RQDWEQTVEM GHRILEKDKS NIDACQILAV HELAREGNMT V--------A BACU014614/1-1401 RQDWERTVET GHRILEKDES NIDACQILAV HDLAREGNIT T--------A bmy_01655T0/1-1433 RQDWERTVET GHRILEKDES NIDACQILAV HELAREGNIT T--------A ENSTTRP00000005776/1-1321 RQDWEQTVET GHRILEKDES NVDACQILAV HELAREGNIT TVSSFKTQKA 401 450 ENSP00000398211/1-1320 TNHVRNLIKA LETREPENPS LHLKKIIVVS RLCGSHQVIL GLVCSFIERT ENSBTAP00000045433/1-1305 AEHVRNLIKA LETREPENPS LHLKKILVVS RLCGRHQGIL QLVCSFIERT BACU014614/1-1401 AKHVRNLIKA LETREPQNPS LHLKKILVVG RLSGRHQAIL RLVCSFLERT bmy_01655T0/1-1433 AKHVRNLIKA LETREPQNPS LHLKKIIVVG RLSGRHQAIL WLVCSFLERT ENSTTRP00000005776/1-1321 AERVRNLIKA LETREPQNPS LHLKKILVVG RLSGRHQAIL QLVCSFLERT 451 500 ENSP00000398211/1-1320 FMATPSYVHV ATELGYLFIL KNQVKEALLW YSEAMKLDKD GMAGLTGIIL ENSBTAP00000045433/1-1305 FMATSSDAHM ATELGYLFIL QDQVKEASLW YSKAMKLDES SVAALTGIIW BACU014614/1-1401 FMATSSYAHV ATELGYLFIL QDQVKEASLW YSEAMKLDES SMAAVTGVIW bmy_01655T0/1-1433 FMATSSYAHV ATELGYLFIL QDQVKEASLW YSEAMKLDES SMAALTGVIW ENSTTRP00000005776/1-1321 FMATSSYAHV ATELGYLFIL QDQVKEASLW YSEAMKLDES SMAALTGVIW 501 550 ENSP00000398211/1-1320 CHILEGHLEE AEYRLEFLKE VQKSLGKSEV LIFLQALLMS RKHKGEEETT ENSBTAP00000045433/1-1305 CQILDGHLEE AEHQLEFLKE VQQSLGKSKV LVFLQALLVS KKHRGEQEAT BACU014614/1-1401 CQILDGHLEE AEHQLEFLKE VQQSLGKSEV LVFLQALLAS KKHKGEQEAA bmy_01655T0/1-1433 CQILDGHLEE AEHQLEFLKE VQQSLGKSEV LVFLQALLAS KKHKGEQEAA ENSTTRP00000005776/1-1321 CQILDGHLEE AEHQLEFLKE VQQSFGKSEV LVFLQALLAS KKHKGEQEAA 551 600 ENSP00000398211/1-1320 ALLKEAVELH FSSMQGIPLG SEYFEKLDPY FLVCIAKEYL LFCPKQPRLP ENSBTAP00000045433/1-1305 TLLKEAAELH FSSMQALPMS SEYLERLDPI FLVCIAKEYL VFCPKQPRSP BACU014614/1-1401 ALLKEAAELH FSSMQALPLS SEYFERLDPL FLVCIAKEYL VFCPKQPRSP bmy_01655T0/1-1433 ALLKEAAELH FSSMQALPLS AEYFERLDPL FLVCIAKEYL VFCPKQPRSP ENSTTRP00000005776/1-1321 ALLKEAAELH FSSTQALPLS TEYFERLDPL FLVCIAKEYL VFCPKQPRSP 601 650 ENSP00000398211/1-1320 GQIVSPLLKQ VAVILNPVVK AAPALIDPLY LMAQVRYYS- ELENAQSILQ ENSBTAP00000045433/1-1305 GQIVSPLLKQ VAAILNPVVK VAPALIEPLY VMAQVKYLSG ELEHAQSTLQ BACU014614/1-1401 GQIVSPLLKQ VSVILNPVVK AAPALIDPLY VMAQVKYLSG ELENAQSTLQ bmy_01655T0/1-1433 GQIVSPLLKQ VSVILNPVVK AAPALIDPLY VMAQVKYLSG ELENAQSTLQ ENSTTRP00000005776/1-1321 GQIMSPLLKQ VSVILHPVVK AAPALIDPLY LMAQVKYLSG ELEYAQSTLQ 651 700 ENSP00000398211/1-1320 RCLELDPASV DAHLLMCQIY LAQGNFGMCF HCLELGVSHN FQVRDHPLYH ENSBTAP00000045433/1-1305 RCLELDPTSV DTHLLMAQIY LAQGNFAMCS HSLELGVSHN FQVRDHPLYH BACU014614/1-1401 RCLELDPTSV DAYLLMSQIY LAQGNFAMCS HCLELGVSYN FQVRDHPLYH bmy_01655T0/1-1433 RCLELDPTSV DAYLLMSQIY LAQGNFPMCS HCLELGVSYN FQVRDHPLYH ENSTTRP00000005776/1-1321 RCLELDPTSV DAYLLMSQIY LAQGNFAMCS HCLELGVSYN FQVRDHPLYH 701 750 ENSP00000398211/1-1320 LIKARALNKA GDYPEAIKTL KMVIKLPALK KEEGRKFLRP SVQPSQRASI ENSBTAP00000045433/1-1305 FIKAKALNKS GDYPEAIKAL KMIIKLPTLR TEENKKFRGP CVRPSERVSI BACU014614/1-1401 FIKARALNKS GDYPEAIKAL KMIIKLPILK MEESRKFHGP SVRPSERVSI bmy_01655T0/1-1433 FIKARALNKS GDYPEAIKAL KMIIKLPILK MEESKKFHGP SVRPSERVSI ENSTTRP00000005776/1-1321 FIKARALNKS GDYPEAIKAL KMIIKLPNLK MEESKKFHGP SVRPSERVSI 751 800 ENSP00000398211/1-1320 LLELVEALRL NGELHEATKV MQDTINEFGG TPEENRITIA NVDLVLSKGN ENSBTAP00000045433/1-1305 LLELADALRM NGELHEATKV MQDAINEFSG TPEEMRVTIA NVDLALSKGS BACU014614/1-1401 LLELADALRM NGELHEATKV MQDTINEFSG TPEEIRITIA NVDLALSKGN bmy_01655T0/1-1433 LLELADALRM NGELHEATKV MQDTINEFSG TPEEIRITIA NVDLALSKGN ENSTTRP00000005776/1-1321 LLELADALRM NGELHEATKV MQDTINEFSG TPEEIRITIA NVDLALSKGN 801 850 ENSP00000398211/1-1320 VDVALNMLRN ILPKQSCYME AREKMANIYL QTLRDRRLYI RCYRELCEHL ENSBTAP00000045433/1-1305 VDLALSVLQS ITPRQPCYTE AKEKMASIYL QTRKDARLYI GCYRELCEHL BACU014614/1-1401 VDLALSILRN ITPKQPCYTE AKEKMASIYL QTRKDVHLYI GCYRELCEHL bmy_01655T0/1-1433 VDLALSILRN ITPKQPCYTE AKEKMASIYL QTRKDVHLYI GCYRELCEHL ENSTTRP00000005776/1-1321 VDLALSILRN ITPKQPCYME AKEKMASIYL QTCKDVRLYI GCYRELCEHL 851 900 ENSP00000398211/1-1320 PGPHTSLLLG DALMSILE-- ---------- ---------- ---------- ENSBTAP00000045433/1-1305 PGPHTSLLLG DAFMNIQE-- ---------- ---------- ---------- BACU014614/1-1401 PGPHTSLLLG DAFMNIQEVS EGLVTSPSGP LPPKTYFSSE REERDCGPFP bmy_01655T0/1-1433 PGPHTSLLLG DAFMNIQE-- ---------- ---------- ---------- ENSTTRP00000005776/1-1321 PGPHTSLLLG DAFMNIQE-- ---------- ---------- ---------- 901 950 ENSP00000398211/1-1320 --PEKALEVY DEAYRQNPHD ASLASRIGHA YVKAHQYTEA IEYYEAAQKI ENSBTAP00000045433/1-1305 --PEKALEVY DEAYRKNPHD ASLINRIGQA YVKTHQYTKX LTVFPSLTSS BACU014614/1-1401 HQPEKALEVY DEAYRKNPHD ASLISRIGQA YVKTHQYTKA INYYEAAQKI bmy_01655T0/1-1433 --PEKALEVY DEAYRKNPHD ASLISRIGQA YVKTHQYTKA INYYEAAQKI ENSTTRP00000005776/1-1321 --PEKALEVY DEAYRKNPHD ASLISRIGQA YVKTHQYTKA INYYEAAQKI 951 1000 ENSP00000398211/1-1320 NGQDFLCCDL GKLLLKLKKV NKAEKVLKQA LEHDIVQDIP SMMNDVKCLL ENSBTAP00000045433/1-1305 RHTPSSPAGW GRGQALAGAP NPAPILPQQP PPQGPVKDIP SMMNDVKCLL BACU014614/1-1401 SGQDFLCCDL AELLLKLKKF NKAEKVLKQA LDHDFVKDIP SMMNDVKCLL bmy_01655T0/1-1433 SGQDFLCCDL AELLLKLKKF NKAEKVLKQA LDHDFVKDIP SMMNDVKCLL ENSTTRP00000005776/1-1321 SGQDFLCHDL AELLLKLKKF NKAEKVLKQA LDHDFVKDIP SLMNDVKCLL 1001 1050 ENSP00000398211/1-1320 LLAKVYKSHK KEAVIETLNK ALDLQSRILK RVPLEQPEMI PSQKQLAASI ENSBTAP00000045433/1-1305 LLAKVYKSHK KEDVTETLNK AMDLQSRILK RVPLERPEMI PSQKQLAASI BACU014614/1-1401 LLAKVYKSHK KEDVMDTLNK AMDLQSRILT RVPLEQPEMI PSQKQLAASI bmy_01655T0/1-1433 LLAKVYKSHK KEDVMDTLNK AMDLQSRILK RVPLEQPEMI PSQKQLAASI ENSTTRP00000005776/1-1321 LLAKVYKSHK KEDVMDTLNK AMDLQSRILK RVPLEQPEMI PSQKQLAASI 1051 1100 ENSP00000398211/1-1320 CIQFAEHYLA EKEYDKAVQS YKDVFSYLPT DNKVMLELAQ LYLLQGHLDL ENSBTAP00000045433/1-1305 CIQFGEYYLA EKEYAKAVQS YKDALSYTPI NNKVVLELAR LYLLQGHLDL BACU014614/1-1401 CNHFGEYYLA EKEYAKAAQS YKDALSYSPI DNKVVLELAR LYLLQGHLDL bmy_01655T0/1-1433 CVHFGEYYLA EKEYAKAVQS YKDALSYSPI DNKVVLELAR LYLLQGHLDL ENSTTRP00000005776/1-1321 CIHFGEYYLA EKEYAKAVQS YKDALSYSPI DDKVVPELAR LYLLQGHLDL 1101 1150 ENSP00000398211/1-1320 CEQHCAILLQ TEQNHETASV LMADLMFRKQ KHEAAINLYH QVLEKAPDNF ENSBTAP00000045433/1-1305 CEQHCADLLQ TEKNHEAASV VMADLMFRRQ KYEAAINLYH QVLEKAPDNF BACU014614/1-1401 CEQHCAILLQ TEKNHETASV MMADLMFRKQ NYEAAINLYH QVLEEAPDNF bmy_01655T0/1-1433 CEQHCAILLQ TEKNHETASV MMADLMFRKQ KYEAAINLYH QVLEKAPDNF ENSTTRP00000005776/1-1321 CEQHCAILLQ TEKNHETASV MMADLMFRKQ KYEAAINLYH QVLEKAPDNF 1151 1200 ENSP00000398211/1-1320 LVLHKLIDLL RRSGKLEDIP AFFELAKKVS SRVPLEPGFN YCRGIYCWHI ENSBTAP00000045433/1-1305 PVLNKLIDLL RRSGKLEDAP AVFELAEKMS SRVPLEPGFN FCRGIYCWHI BACU014614/1-1401 PVLNKLIDLL RRSGKLEDAP AFFELAKKVS SRVPLEPGFN YCRGIYCWHI bmy_01655T0/1-1433 PVLNKLIDLL RRSGKLEDAP AFFELAKKVS SRVPLEPGFN YCRGIYCWHI ENSTTRP00000005776/1-1321 PVLNKLIDLL RRSGKLEDAP AFFELAKKVS SRVPLEPGFN YCRGIYCWHI 1201 1250 ENSP00000398211/1-1320 GQPNEALKFL NKARKDSTWG QSAIYHMVQI CLNPDNEVVG GEAFENQGAE ENSBTAP00000045433/1-1305 GQPNEALKFL NKARKDTAWG QSATYHMVQI CLNPDNEIVG GEAFENLVTE BACU014614/1-1401 GQPNEALKFL NKARKDSTWG QSATYYMVQI CLNPDNEIVG GEAFENLVTE bmy_01655T0/1-1433 GQPNEALKFL NKARKDSTWG QSATYYMVQI CLNPDNEIVG GEAFENLVTE ENSTTRP00000005776/1-1321 GQPNEALKFL NKARKDSTWG QSAIYYMVQI CLNPDNEIVG GEAFENLVTE 1251 1300 ENSP00000398211/1-1320 SNYMEKKELE QQGVSTAEKL LREFYPHSDS SQTQLRLLQG LCRLATREKA ENSBTAP00000045433/1-1305 SNFSSRKELE QHGVRTAEKL LREFYPHSAG GHTQLRLLQS LCLLATREKA BACU014614/1-1401 S----KKELE QHGVRTAEKL LREFYPHSAW GQTQLRLLQS LCLLATREKA bmy_01655T0/1-1433 S----KKELE QHGVRTAEKL LREFYPHSAW GQTQLRLLQS LCLLATREKA ENSTTRP00000005776/1-1321 SNSTDRKELE QHGVRTAEKL LREFYPHSAW GQTQLRLLQS LCLLATREKA 1301 1350 ENSP00000398211/1-1320 NMEAALGSFI QIAQAEKDSV PALLALAQAY VFLKQIPKAR MQLKRLAKTP ENSBTAP00000045433/1-1305 NVEVALSTFV EMAQAEKDSV PALLAMAQAC SLLKQVPKAR TQLKRLAKAP BACU014614/1-1401 NMEAALGTFI EMAQAE---- --------AY SLLKQVPKAR TQLKRLAKAP bmy_01655T0/1-1433 NMEAALGTFI EMAQAEKDSI PALLAVAQAY SLLKQVPKAR TQLKRLAKAP ENSTTRP00000005776/1-1321 NVEAALGTFT EMAQAEKDSI PALLAMAQAY SLLKQVPKAR TQLKRLAKAP 1351 1400 ENSP00000398211/1-1320 WVLSEAEDLE KSWLLLADIY CQGSKFDLAL ELLRRCVQYN K--------- ENSBTAP00000045433/1-1305 WALAEADDLE RSWLLLADIY CQGGKFDLAS ELLQRCVKYN K--------- BACU014614/1-1401 WTLAEAEDLE KSWLLLADIY CQGGKFDLAS ELLRRCMQYN KARGARLGSD bmy_01655T0/1-1433 WTLAEAEDLE KSWLLLADIY CQGGKFDLAS ELLRRCMQYN K--------- ENSTTRP00000005776/1-1321 WTLAEAEDLE KSWLLLADIY CQGGKFDLAS ELLRRCMQYN K--------- 1401 1450 ENSP00000398211/1-1320 -----SCYKA YEYMGFIMEK EQSYKDAVTN YKLAWKYSHH ANPAIGFKLA ENSBTAP00000045433/1-1305 -----SCCKA YEYMGFIMER EQSYKDAAAN YELAWKYSHH TNPAIGFRLA BACU014614/1-1401 RLSLQSCCKA YEYMGFIMER EQSYKDAATN YELAWKYSHH ANPASGFKLA bmy_01655T0/1-1433 -----SCCKA YEYMGFIMER EQSYKDAATN YELAWKYSHH ANPASGFKLA ENSTTRP00000005776/1-1321 -----SCCKA YEYMGFIMER EQSYKDAATN YELAWKYSHH ANPASGFKLA 1451 1500 ENSP00000398211/1-1320 FNYLKDKKFV EAIEICNDVL REHPDYPKIR EEILEKARRS LRP ENSBTAP00000045433/1-1305 FNYLKDKRFV EAIEVCHDVL REHPNYPKIR EEILEKAQGS LRP BACU014614/1-1401 FNYLKDKRFV EAIEVCHDVL KQHPNYPRIR EEILEKAQGS LRP bmy_01655T0/1-1433 FNYLKDKRFV EAIEVCHDVL KEHPNYPRIR EEILEKAQGS LRP ENSTTRP00000005776/1-1321 FNYLKDKRFV EAIEVCHDVL KEHPNYPRIR EEILQKAQGS LRP