KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:01 2014 Check: 00 .. Name: ENSP00000362424/1-691 Len: 811 Check: 5803 Weight: 1.00 Name: ENSBTAP00000045498/1-686 Len: 811 Check: 5190 Weight: 1.00 Name: ENSTTRP00000009469/1-529 Len: 811 Check: 3982 Weight: 1.00 Name: bmy_17948T0/1-497 Len: 811 Check: 9451 Weight: 1.00 Name: BACU011017/1-644 Len: 811 Check: 2601 Weight: 1.00 // 1 50 ENSP00000362424/1-691 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045498/1-686 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009469/1-529 ---------- ---------- ---------- ---------- ---------- bmy_17948T0/1-497 YPIEELKTDP QSFKTDRRIC RTLRQPHRRR RPSARAAGQG SGRRRGSVAK BACU011017/1-644 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000362424/1-691 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045498/1-686 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009469/1-529 ---------- ---------- ---------- ---------- ---------- bmy_17948T0/1-497 AAPPWRPRAA APRTRLGGLR CTVGWKLERR VQAGPGRGGG AGGGWGAGLK BACU011017/1-644 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000362424/1-691 ---------- -MNAAVVRRT QEALGKVIRR PPLTEKLLSK PPFRYLHDII ENSBTAP00000045498/1-686 ---------- -MNAAVVKRT QEALGKVIRR PPLTEKLLNK PPFRYLHDII ENSTTRP00000009469/1-529 ---------- -MNAAVVKRT QEALGKVIRR -PLTEKLLNE PPFRYLHDII bmy_17948T0/1-497 LGGRRDAGGA AMNAAVVKRT QEALGKVIRR PPLTEKLLNK PPFRYLHDII BACU011017/1-644 ---------- -MNAAVVKRT QEALGKVIRR PPLTEKLLNK PPFRYLHDII 151 200 ENSP00000362424/1-691 TEVIRMTGFM KGLYTDAEMK SDNVKDKDAK ISFLQKAIDV VVMVSGEPLL ENSBTAP00000045498/1-686 TEVIRMTGFM KGLYTDVEMK SDNVKDKDAK ISFLQKAIDV VVIVSGEPLS ENSTTRP00000009469/1-529 TEVIRMTGFM KGLYTDAEMK SDNVKXXXXX XXXXXXXXXX XXMVSGEPLL bmy_17948T0/1-497 TEVIRTTGFM KGLYTDAEMK SDNVKDKDAK ISFLQKAIDV VVMVSGEPLL BACU011017/1-644 TEVIRTTGFM KGLYTDAEMK SDNVKDKDTK ISFLQKAIDV VVMVSGEPLL 201 250 ENSP00000362424/1-691 AKPARIVAGH EPERTNELLQ IIGKCCLNKL SSDDAVRRVL AGEKGEVKGR ENSBTAP00000045498/1-686 AKPTRIVAGH EPERTNELLQ RIGKCCLSKL SSDDAVKRVL AGEKGDTKGR ENSTTRP00000009469/1-529 AKPARIVAGH EPERTNELLQ RIGKCCLNKL SSDDAVKRVL AGEKVETKGR bmy_17948T0/1-497 AKPARIVAGH EPERTNELLQ RIGKCCLNKL SSDDAVKRVL AGEKAETKGR BACU011017/1-644 AKPARIVAGH EPERTNELLQ RIGKCCLNKL SSDDAVKRVL AGEKAETKGR 251 300 ENSP00000362424/1-691 ASLTSRSQEL DNKNVREEES RVHKNTEDRG DAEIKERSTS RDRKQKEELK ENSBTAP00000045498/1-686 PSLTSKPQEL DNKNVREDES RVQKDKEDRG NSELKERSTS RDQKQKEDLK ENSTTRP00000009469/1-529 SSLTSKP--- ---------- ---------- ---------- -----KNDKE bmy_17948T0/1-497 SSLTSKPQEL DNKNVRVEAS RVPKDKADRR NSEINERNTS GGRKQKEELK BACU011017/1-644 SSLTSKPQEL DNKNVREEAS RVPKDKADRR NSEINERNTS GGRKQKEELK 301 350 ENSP00000362424/1-691 EDRKPREKDK DKEKAKENGG NRHR------ --EGERERAK ARARPDNERQ ENSBTAP00000045498/1-686 EESKPREKER DKAKAKENER DRHKEPERDK HREGDRERAK NRARPDRERD ENSTTRP00000009469/1-529 EESKPREKER DREKAKENDR DRHK------ --EGESERAK NRARPE---G bmy_17948T0/1-497 EENKPREKER DKEKAKENDR DRHKDPERDK YHEGERERAK NRARPERDRA BACU011017/1-644 EENKPREKER DREKAKENDR DRHKDPERDK YHEGERERAK NRTRPERDRA 351 400 ENSP00000362424/1-691 KDRGNRERDR DSERKKETER KSEGGKEKER LRDRDRERDR DKGKDRDRRR ENSBTAP00000045498/1-686 RDRGPRERDK DA------ER RSEGGKEKER GKERERERE- -------RRR ENSTTRP00000009469/1-529 QDKG-AERES --------ER KNEGGKE-EK WKDRESERER HKGQERARQR bmy_17948T0/1-497 KD---AERER --------ER MNEGGKEKEK RKDRERERER DRDRDRGRQR BACU011017/1-644 KD---AERER --------EP KNEGGKEKEK RKERERERER DRGRD--RQR 401 450 ENSP00000362424/1-691 VKNGEHSWDL DREKNREHDK PEKKSASSGE MSKKLSDGTF KDSKAETETE ENSBTAP00000045498/1-686 LRNGELCRDP EPERSRELDR PEKKLSSSGE MSKKLSDGSF KDPKAETETE ENSTTRP00000009469/1-529 VRDGQRSRDP DRERSHEREK PGRKSSSSGE MSKKASDGSF KDSKAETETE bmy_17948T0/1-497 VRNGEHGGDP DGEKSHERDK PEKKSSSSGE MSKKSSDGSF KDSKAETETE BACU011017/1-644 VRNGEHGGDP DREKSHERDK PEKKSSSSGE MSKKSSDGSF KDSKAETETE 451 500 ENSP00000362424/1-691 ISTRASKSLT TKTSKRRSKN SVEGRKEDNI SAKSLDSIVS GINNEPNQET ENSBTAP00000045498/1-686 IPTRASRSVT TKMSKQRSKN SVEGRKENVV SAKILDPVVP GLNNEPDQET ENSTTRP00000009469/1-529 ISSRASRSVT TKTSKRRSKN SVEXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17948T0/1-497 IPTRASRSVT TKTSKRRSKN S-----EDDI SAKILDPIVS GLNNEPDQET BACU011017/1-644 ISTRASRSVT TKTSKRRSKN SVEG------ ---------- ---------- 501 550 ENSP00000362424/1-691 TTSEIGTKEA NINSTSISDD NSASLRCENI QPNPTEKQKG DSTSDAEGDA ENSBTAP00000045498/1-686 TTSEIETKEA NTNSASISDD TAASLWRGSA ESEPAVKQKG DCPSDAEGDA ENSTTRP00000009469/1-529 XXXXXXTKEA NTNSASVSDA NSSSLPRESA EPEPAVKQKG DSPSDAEGDV bmy_17948T0/1-497 TTSEIVYRRT EMT------- ---------- ---------- ---------- BACU011017/1-644 ------TKEA NTHSASVSDA NSSSLQRESA EPEPAVKQKG DSPSDAEGDV 551 600 ENSP00000362424/1-691 GPAGQDKSEV PETPEIPNEL SSNIRRIPRP GSARPAPPRV KRQDSMEALQ ENSBTAP00000045498/1-686 GAPGQEKSEA PENPEPPGEP PAAVRRLPRP GSARPAPPRV RRQESVEALT ENSTTRP00000009469/1-529 GPSGQEKCEV PENSELPGEL PAAVRRIPRP GSARPAPPRV RRPESAEVPT bmy_17948T0/1-497 ---------- ---------- ---------- ---------- ---------- BACU011017/1-644 GPSGQEKCEV PENSELPGEL PAAVRRIPRP GSARPAPPRV RRQESAEVLT 601 650 ENSP00000362424/1-691 MDRSGSGKTV SNVITESHNS DNEEDDQFVV EAAPQLSEMS EIEMVTAVEL ENSBTAP00000045498/1-686 TDRTGSGKTV SNVITESQNS DNEDDDQFVV EAAPQLPEMS ELEMAQAVEL ENSTTRP00000009469/1-529 TDRTGSGKTV SNVIIESQNS DSEDADQFVV EAAPQLSETS ELEMVQAVEL bmy_17948T0/1-497 ---------- ---------- ---------- ---------- ---------- BACU011017/1-644 SDRTGSGKTI SNVIVESQNS DNEDDDQFVV EAAPQLSEVS ELEMVQAVEL 651 700 ENSP00000362424/1-691 EEEEKHGGLV KKILETKKDY EKLQQSPKPG EKERSL-FES AWKKEKDIVS ENSBTAP00000045498/1-686 EEDEKHGGLV KKILETKKDY EKLQQSSRPG EKEKPLVFES SWKKEKDIVS ENSTTRP00000009469/1-529 -QDEKHGGLV KKILETKKDY EKLQQSPKPG EKEKLLVFES AWKKEKDIVS bmy_17948T0/1-497 ---------- ---------- ---------- ---------- ---------- BACU011017/1-644 -EDEKHGGLV KKILETKKDY EKLQQSPKPG EKEKLLVFES AWKKEKDIVS 701 750 ENSP00000362424/1-691 KEIEKLRTSI QTLCKSALPL GKIMDYIQED VDAMQNELQM WHSENRQHAE ENSBTAP00000045498/1-686 KEIEKLRVSI QTLCRSALPL GKIMDYIQED VDAMQNELQL WHAENQQHAE ENSTTRP00000009469/1-529 K--------- ---------- ---------- ---------- ---------- bmy_17948T0/1-497 ---------- ---------- ---------- ---------- ---------- BACU011017/1-644 KEIEKLRGSI QSLCRSALPL GKIMDYLQED VDAMQKELQL WRSESRQHAE 751 800 ENSP00000362424/1-691 ALQQEQRITD CAVEPLKAEL AELEQLIKDQ QDKICAVKAN ILKNEEKIQK ENSBTAP00000045498/1-686 ALQLEQSITD GAVEPLKAEL AELEQLVRDQ QDKICAVKAN ILKNEEKIQK ENSTTRP00000009469/1-529 ---------- ---------- ---------- ---------- ---------- bmy_17948T0/1-497 ---------- ---------- ---------- ---------- ---------- BACU011017/1-644 ALQAERSITD CAVEPLKAEL AELEQLVRDQ QDKICAVKA- ----VHSCAR 801 850 ENSP00000362424/1-691 MVYSINLTSR R ENSBTAP00000045498/1-686 MVYSINLSSR R ENSTTRP00000009469/1-529 ---------- - bmy_17948T0/1-497 ---------- - BACU011017/1-644 FSSSLP---- -