KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:57:01 2014 Check: 00 .. Name: ENSP00000296420/1-261 Len: 305 Check: 3542 Weight: 1.00 Name: ENSBTAP00000045511/1-250 Len: 305 Check: 5637 Weight: 1.00 Name: bmy_16457T0/1-240 Len: 305 Check: 1370 Weight: 1.00 Name: ENSTTRP00000003894/1-262 Len: 305 Check: 2723 Weight: 1.00 // 1 50 ENSP00000296420/1-261 MELLQVTIL- FLLPSICSSN STGVLEAANN SLVVTT--TK PSITTPNTES ENSBTAP00000045511/1-250 MKLLQGTIFC LLLSSISSND QIADTSATTT P-LSTTSEIN PTPPTRDTRT bmy_16457T0/1-240 MKLLQGTVLC LLLSSLCSGV DDAEVKDTTT PVLSSTSATE TSVPTSNITS ENSTTRP00000003894/1-262 MKLLQGTILC LLLSSLCSGL DDTEVKDTAT PVLPSTSATK TSVPTSNTTS 51 100 ENSP00000296420/1-261 LQKNVVTPTT GTTPKGTITN ELLKMSLMST ATFLTSKDEG LKATTTDVRK ENSBTAP00000045511/1-250 SPN------- -----GTSSK EAAQMPHLLT PSPVTPNTKG DGASTESIME bmy_16457T0/1-240 SPNVVEKSTV EIS------- ---------- ---------- ---------- ENSTTRP00000003894/1-262 SPNVAEKSTV EISAKGATSK EPLETSLLST LSSVTTAVNE LGSTAKGVTK 101 150 ENSP00000296420/1-261 NDSIISNVTV TSVTLPNAVS TLQSSKPKTE TQSSIKTTEI PGSVLQPDAS ENSBTAP00000045511/1-250 TKLSTTEATV MSQSLSNAVS TSQSSDSKTE TQSSIKATET PVNTSPPEAS bmy_16457T0/1-240 ---------- ---------- ------TKAE IQSSIKATET PVNTLQPDAS ENSTTRP00000003894/1-262 TAFITTRTTV INRPLPNATS TLQSPQSKTE IQSSIKATET TVNTLQPDAS 151 200 ENSP00000296420/1-261 PSKTGTLTSI PVTIPENTSQ SQVIGTEGGK NASTSATSRS YSSIILPVVI ENSBTAP00000045511/1-250 SFRTATLSSI SVTSAENISP SQV-GLENAK NASASTTSPS YSSIILPIVI bmy_16457T0/1-240 PSRIPTLSSI SVTILENISQ SQ--GTENAK NASSSSTNPS YSSIILPVVI ENSTTRP00000003894/1-262 PTRIPTLSSI SVTILENISQ SQV-ITENAK NASSSSAS-S YSSIILPVVI 201 250 ENSP00000296420/1-261 ALIVITLSVF VLVGLYRMCW KADPGTPENG NDQPQSDKES VKLLTVKTIS ENSBTAP00000045511/1-250 ALIVITLSVF VLVGLYRMCW KTDPGTQENG NEQPQSDKES VKLLTVKTIS bmy_16457T0/1-240 ALIAITLSVF ALVGLYRMCW KTDPGTPENG NDQPQSDKES VKLLTVKTIS ENSTTRP00000003894/1-262 ALIAITLSVF ALVGLYRMCW KTDPGTPENG NDQPQSDKES VKLLTVKTIS 251 300 ENSP00000296420/1-261 HESGEH---- ---------- SAQGKTKN-- ---------- ---------- ENSBTAP00000045511/1-250 HESGEH---- ---------- SAQGKTKN-- ---------- ---------- bmy_16457T0/1-240 HESASNLMSF DLQRLTLQLL CSRGRKRESP VDSILTSNPA RQCAPVTCLN ENSTTRP00000003894/1-262 HESGEH---- ---------- SAQGKTKN-- ---------- ---------- 301 350 ENSP00000296420/1-261 ----- ENSBTAP00000045511/1-250 ----- bmy_16457T0/1-240 KVMSR ENSTTRP00000003894/1-262 -----