KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:02 2014 Check: 00 .. Name: bmy_10115T0/1-766 Len: 1175 Check: 3364 Weight: 1.00 Name: ENSTTRP00000000825/1-1131 Len: 1175 Check: 4424 Weight: 1.00 Name: ENSBTAP00000045553/1-1132 Len: 1175 Check: 8075 Weight: 1.00 Name: ENSP00000294725/1-1135 Len: 1175 Check: 5389 Weight: 1.00 Name: BACU001718/1-875 Len: 1175 Check: 2124 Weight: 1.00 // 1 50 bmy_10115T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000825/1-1131 MVDLESEVPP LPPRYRFRDL LLGDQGWQND DRVQVEFYMN ENTFKERLKL ENSBTAP00000045553/1-1132 ---------- ---------- ---------- -RVQVEFYMN ENTFKERLKL ENSP00000294725/1-1135 MVDLESEVPP LPPRYRFRDL LLGDQGWQND DRVQVEFYMN ENTFKERLKL BACU001718/1-875 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_10115T0/1-766 ---MAERRQY QKEAYNTSLY HMAGFESIL- ---------- ---------- ENSTTRP00000000825/1-1131 FFIKNQRSSL RIRLFNFSLK LLSCFLYIIR VLLENPSQG- ---------- ENSBTAP00000045553/1-1132 FFIKNQRSSL RIRLFNFSLK LLSCLLYIIR VLLENPSQGL CCYLCSKQHL ENSP00000294725/1-1135 FFIKNQRSSL RIRLFNFSLK LLSCLLYIIR VLLENPSQG- ---------- BACU001718/1-875 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_10115T0/1-766 --------TK YGDCALESQA PSLDKLMQLK RAMTDHCKIH VYSFFRY--- ENSTTRP00000000825/1-1131 --------NE WSHIFWVNRS LPLWGL-QVS VALISLFETI LLGYLSY-KG ENSBTAP00000045553/1-1132 NIFNFYQNLK MSHIFWVNRS LPLWGL-QVL VALISLFETI LLGYLSYKKG ENSP00000294725/1-1135 --------NE WSHIFWVNRS LPLWGL-QVS VALISLFETI LLGYLSY-KG BACU001718/1-875 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_10115T0/1-766 ----ETFQMP LELSTRNNVQ TFHIIIVQRI QSKLCSLTFK DHQFRYQITY ENSTTRP00000000825/1-1131 NIWEQILRIP FILEVINAVP FIISIFWPSL RNLFVPVFLN CWLAKHALEN ENSBTAP00000045553/1-1132 NIWEQILRIP FILEIINAVP FIISIFWPSL RNLFVPVFLN CWLAKHALEN ENSP00000294725/1-1135 NIWEQILRIP FILEIINAVP FIISIFWPSL RNLFVPVFLN CWLAKHALEN BACU001718/1-875 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_10115T0/1-766 EI--IQAALF RVQVEFYMNE NTFKERLKLF FIKNQRSMPY TLVNICGIQH ENSTTRP00000000825/1-1131 MINDLHRAIQ RTQSAMFNQ- -------VLI LISTLLCLIF T--CICGIQH ENSBTAP00000045553/1-1132 MINDLHRAIQ RTQSAMFNQ- -------VLI LISTLLCLIF T--CICGIQH ENSP00000294725/1-1135 MINDLHRAIQ RTQSAMFNQ- -------VLI LISTLLCLIF T--CICGIQH BACU001718/1-875 MINDLHRAIQ RTQSAMFNQ- -------VLI LISTLLCLIF T--CICGIQH 251 300 bmy_10115T0/1-766 LERIGKKLNL FDSLYFCIVT FSTVGFGDVT PETWSSKLFV VAMICVALVV ENSTTRP00000000825/1-1131 LERIGKKLNL FDSLYFCIVT FSTVGFGDVT PETWSSKLFV VAMICVALVV ENSBTAP00000045553/1-1132 LERIGKKLNL FDSLYFCIVT FSTVGFGDVT PETWSSKLFV VAMICVALVV ENSP00000294725/1-1135 LERIGKKLNL FDSLYFCIVT FSTVGFGDVT PETWSSKLFV VAMICVALVV BACU001718/1-875 LERIGKKLNL FDSLYFCIVT FSTVGFGDVT PETWSSKLFV VAMICVALVV 301 350 bmy_10115T0/1-766 LPIQFEQLAY LWMERQKSGG NYSRHRAQTE KHVVLCVSSL KIDLLMDFLN ENSTTRP00000000825/1-1131 LPIQFEQLAY LWMERQKSGG NYSRHRAQTE KHVVLCVSSL KIDLLMDFLN ENSBTAP00000045553/1-1132 LPIQFEQLAY LWMERQKSGG NYSRHRAQTE KHVVLCVSSL KIDLLMDFLN ENSP00000294725/1-1135 LPIQFEQLAY LWMERQKSGG NYSRHRAQTE KHVVLCVSSL KIDLLMDFLN BACU001718/1-875 LPIQFEQLAY LWMERQKSGG NYSRHRAQTE KHVVLCVSSL KIDLLMDFLN 351 400 bmy_10115T0/1-766 EFYAHPRLQG RDIRQTTSTQ HD----KNLG LKLCEMPKQF ASGFKLKELV ENSTTRP00000000825/1-1131 EFYAHPRLQD YYVVILCPTE MDVQVRRVLQ IPMWSQRVIY LQGSALKDQD ENSBTAP00000045553/1-1132 EFYAHPRLQD YYVVILCPTE MDVQVRRILQ IPMWSQRVIY LQGSALKDQD ENSP00000294725/1-1135 EFYAHPRLQD YYVVILCPTE MDVQVRRVLQ IPMWSQRVIY LQGSALKDQD BACU001718/1-875 EFYAHPRLQD YYVVILCPTE MDVQVRRVLQ IPMWSQRVIY LQGSALKDQD 401 450 bmy_10115T0/1-766 LY-------- ---------- ---TGQDHQT ILRAWAVKDF APNCPLYVQI ENSTTRP00000000825/1-1131 LLRAKMDDAE ACFILSSRCE VDRTSSDHQT ILRAWAVKDF APNCPLYVQI ENSBTAP00000045553/1-1132 LLRAKMDDAE ACFILSSRCE VDRTSSDHQT ILRAWAVKDF APNCPLYVQI ENSP00000294725/1-1135 LLRAKMDDAE ACFILSSRCE VDRTSSDHQT ILRAWAVKDF APNCPLYVQI BACU001718/1-875 LLRAKMDDAE ACFILSSRCE VDRTSSDHQT ILRAWAVKDF APNCPLYVQI 451 500 bmy_10115T0/1-766 LKPENKFHIK FADHVVCEEE FKYAMLALNC ICPATSTLIT LLVHTSRGQE ENSTTRP00000000825/1-1131 LKPENKFHIK FAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE ENSBTAP00000045553/1-1132 LKPENKFHIK FADHVVCEEE FKYAMLALNC ICPATSTLIT LLVHTSRGQE ENSP00000294725/1-1135 LKPENKFHIK FADHVVCEEE FKYAMLALNC ICPATSTLIT LLVHTSRGQE BACU001718/1-875 LKPENKFHIK FADHVVCEEE FKYAMLALNC ICPATSTLIT LLVHTSRGQE 501 550 bmy_10115T0/1-766 GQQSPEQWQK MYGRCSGNEV YHIVLEESTF FAEYEGKSFT YASFHAHKK- ENSTTRP00000000825/1-1131 GQQSPEQWQK MYGRCSGNEV YHIVLEESTF FAEYEGKSFT YASFHAHKKF ENSBTAP00000045553/1-1132 GQQSPEQWQK MYGRCSGNEV YHIVLEESTF FAEYEGKSFT YASFHAHKKF ENSP00000294725/1-1135 GQQSPEQWQK MYGRCSGNEV YHIVLEESTF FAEYEGKSFT YASFHAHKKF BACU001718/1-875 GQQSPEQWQK MYGRCSGNEV YHIVLEESTF FAEYEGKSFT YASFHAHKKF 551 600 bmy_10115T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000825/1-1131 GVCLIGIRRE DNKNILLNPG PRYIMSATDI CFYINITKEE NSAFKNHDHQ ENSBTAP00000045553/1-1132 GVCLIGIRRE DNKNILLNPG PRYIMNATDT CFYINITKEE NSAFKNHDHQ ENSP00000294725/1-1135 GVCLIGVRRE DNKNILLNPG PRYIMNSTDI CFYINITKEE NSAFKNQDQQ BACU001718/1-875 GVCLIGIRRE DNKNILLNPG PRCIMNATDI CFYINITKEE NSAFKNHDHQ 601 650 bmy_10115T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000825/1-1131 KKSNVSRSFY HGPSRLPVHS IIASMGTVAI DLQDTSCRSA SGPTLSLPSE ENSBTAP00000045553/1-1132 KKSNVPRSFY HGPSRLPVHS IIASMGTVAI DLQDTSCRSA SGPTLSLPTE ENSP00000294725/1-1135 RKSNVSRSFY HGPSRLPVHS IIASMGTVAI DLQDTSCRSA SGPTLSLPTE BACU001718/1-875 KKSNVSRSFY HGPSRLPVHS IIASMGTVAI DLQDTSCRSA SGPTLSLPSE 651 700 bmy_10115T0/1-766 ---------- ---------- ---------- ---------- -------YAK ENSTTRP00000000825/1-1131 GNKEVRRPSI APVLEVADTS SLQTCDLLSD QSEDETTPDE EMSSNVEYAK ENSBTAP00000045553/1-1132 GSKEVRRPSI APVLEVADTS SIQTCDLLSD QSEDETTPDE EMSSNLEYAK ENSP00000294725/1-1135 GSKEIRRPSI APVLEVADTS SIQTCDLLSD QSEDETTPDE EMSSNLEYAK BACU001718/1-875 GNKEVRRPSI APVLEVADTS SIQTCDLLSD QSEDETTPDE EMSSNVEYAK 701 750 bmy_10115T0/1-766 GYPPYSPYIG SSPTFCHLLH EKVPFCCLRL DKSCQHNCYE DAKAYGFKNK ENSTTRP00000000825/1-1131 GYPPYSPYIG SSPTFCHLLH EKVPFCCLRL DKSCQHNYYE DAKAYGFKNK ENSBTAP00000045553/1-1132 GYPPYSPYIG SSPTFCHLLH EKVPFCCLRL DKSCQHNYYE DAKAYGFKNK ENSP00000294725/1-1135 GYPPYSPYIG SSPTFCHLLH EKVPFCCLRL DKSCQHNYYE DAKAYGFKNK BACU001718/1-875 GYPPYSPYIG SSPTFCHLLH EKVPFCCLRL DKSCQHNCYE DAKAYGFKNK 751 800 bmy_10115T0/1-766 LIIVAAETAG NGLYNFIVPL RAYYRPKKEL NPVILLLDNP ---------- ENSTTRP00000000825/1-1131 LIIVAAETAG NGLYNFIVPL RAYYRPKKEL NPVILLLDNP PDMHFLDAIC ENSBTAP00000045553/1-1132 LIIVAAETAG NGLYNFIVPL RAYYRPKKEL NPVILLLDNP PDMHFLDAIC ENSP00000294725/1-1135 LIIVAAETAG NGLYNFIVPL RAYYRPKKEL NPIVLLLDNP PDMHFLDAIC BACU001718/1-875 LIIVAAETAG NGLYNFIVPL RAYYRPKKEL NPVILLLDNP ---------- 801 850 bmy_10115T0/1-766 ---------- ----LDDLLR CGVTFAANMV VVDKESTMSA EEDYMADAKT ENSTTRP00000000825/1-1131 WFPMVYYMVG SIDNLDDLLR CGVTFAANMV VVDKESTMSA EEDYMADAKT ENSBTAP00000045553/1-1132 WFPMVYYMVG SIDNLDDLLR CGVTFAANMV VVDKESTMSA EEDYMADAKT ENSP00000294725/1-1135 WFPMVYYMVG SIDNLDDLLR CGVTFAANMV VVDKESTMSA EEDYMADAKT BACU001718/1-875 ---------- ----LDDLLR CGVTFAANMV VVDKESTMSA EEDYMADAKT 851 900 bmy_10115T0/1-766 IVNVQTLFR- -LFSSLSIIT ELTHPANMRF MQFRAKDCYS LALSKLEKKE ENSTTRP00000000825/1-1131 IVNVQTLFR- --VSSLS-IT ELTHPANMRF MQFRAKDCYS LALCKLEKKE ENSBTAP00000045553/1-1132 IVNVQTLFRC TLFSSLSIIT ELTHP-HMRF MQFRAKHGYA IQLKISEQKE ENSP00000294725/1-1135 IVNVQTLFR- -LFSSLSIIT ELTHPANMRF MQFRAKDCYS LALSKLEKKE BACU001718/1-875 IVNVQTLFR- -LFSSLSIIT ELTHPANMRF MQFRAKDCYS LALSKLEKKE 901 950 bmy_10115T0/1-766 RERGSNLAFM FRLPFAAGRV FSISMLDTLL YQ-------- ---------- ENSTTRP00000000825/1-1131 RXX--XLAFM FRLPFAAGRV FSISMLDTLL YQSFVKDYMI SITRLLLGLD ENSBTAP00000045553/1-1132 RERGSNLAFI FRLPFAAGRV FSISMLDTLL YQSFVKDYMI SITRLLLGLD ENSP00000294725/1-1135 RERGSNLAFM FRLPFAAGRV FSISMLDTLL YQSFVKDYMI SITRLLLGLD BACU001718/1-875 RERGSNLAFM FRLPFAAGRV FSISMLDTLL YQSFVKDYMI SITRLLLGLD 951 1000 bmy_10115T0/1-766 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000825/1-1131 TTPGSGFLCS MKITEDDLWI RTYARLYQKL CSSTGDVPIG IYRTESQKLT ENSBTAP00000045553/1-1132 TTPGSGFLCS MKITEDDLWI RTYARLYQKL CSSTGDVPIG IYRTESQKLT ENSP00000294725/1-1135 TTPGSGFLCS MKITADDLWI RTYARLYQKL CSSTGDVPIG IYRTESQKLT BACU001718/1-875 TTPGSGFLCS MKITEDDLWI RTYARLYQKL CSSTGDVPIG IYRTESQKLT 1001 1050 bmy_10115T0/1-766 ---------- SQISISVEEW EDTKDAKEQG HHRSNHRNST SSDQSDHPLL ENSTTRP00000000825/1-1131 TSE------- SLISISVEEW EDTKDAKEQG HHRSNHRNST SSDQSDHPLL ENSBTAP00000045553/1-1132 TSEKHVMKSK SQISISVEEW EDTKDAKEQG HHRSNHRNST SSDQSDHPLL ENSP00000294725/1-1135 TSE------- SQISISVEEW EDTKDSKEQG HHRSNHRNST SSDQSDHPLL BACU001718/1-875 TSE------- SQISISVEEW EDTKDAKEQG HHRSNHRNST SSDQSDHPLL 1051 1100 bmy_10115T0/1-766 RRKSMQWARR LSRKGPKHS- ---------- ---------- ---------- ENSTTRP00000000825/1-1131 RRKSMQWARR LSRKGPKHSG KTAEKITQQR LNLYRRSERQ ELAELVKNRM ENSBTAP00000045553/1-1132 RRKSMQWARR LSRKGPKHSG RTAEKMTQQR LNLYRRSERQ ELAELVKNRM ENSP00000294725/1-1135 RRKSMQWARR LSRKGPKHSG KTAEKITQQR LNLYRRSERQ ELAELVKNRM BACU001718/1-875 RRKSMQWARR LSRKGPKHSG KTAEKITQQR LNLYRRSERQ ELAELVKNRM 1101 1150 bmy_10115T0/1-766 ---------- DEMNDHQSTL SYILINPSPD TRLELNDVVY LIRPDPLAYL ENSTTRP00000000825/1-1131 KHLGLSTVGY DEMNDHQSTL SYILINPSPD TRLELNDVVY LIRPDPLAYL ENSBTAP00000045553/1-1132 KHLGLSTVGY DEMNDHQNTL SYILINPSPD TRLELNDVVY LIRPDPLAYL ENSP00000294725/1-1135 KHLGLSTVGY DEMNDHQSTL SYILINPSPD TRIELNDVVY LIRPDPLAYL BACU001718/1-875 KHLGLSTVGY GML------- ---------- ----LTSIV- ---------- 1151 1200 bmy_10115T0/1-766 PNGEPSRKNS ICNTTGQDSR EETQL ENSTTRP00000000825/1-1131 PNGEPSRKNS ICNTTGQDSR EETQL ENSBTAP00000045553/1-1132 PNSEPSRKNS ICNTMVQDSR EETQL ENSP00000294725/1-1135 PNSEPSRRNS ICNVTGQDSR EETQL BACU001718/1-875 ---------- ---------- -----