KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:03 2014 Check: 00 .. Name: ENSP00000229243/1-543 Len: 1567 Check: 8599 Weight: 1.00 Name: ENSBTAP00000045557/1-542 Len: 1567 Check: 8488 Weight: 1.00 Name: ENSTTRP00000011141/1-513 Len: 1567 Check: 5432 Weight: 1.00 Name: bmy_11495T0/1-524 Len: 1567 Check: 5037 Weight: 1.00 Name: BACU003079/1-1547 Len: 1567 Check: 4442 Weight: 1.00 // 1 50 ENSP00000229243/1-543 -----MRKPA AGFLPSLLKV LLLPLA---- ---------- ---------- ENSBTAP00000045557/1-542 -----MRHLA AGSFLSLLRV LLLPLA---- ---------- ---------- ENSTTRP00000011141/1-513 -----MRQLA AASLLSLLRV LLLPPA---- ---------- ---------- bmy_11495T0/1-524 -----MRQLA AASLLSLLRV LLLPPA---- ---------- ---------- BACU003079/1-1547 MESRMWPALL LSHLLPLWPL LLLPLPPPAQ GSSSSPRAPP APARPPCARG 51 100 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 GPSAPRHVCV WERAPPPSRS PRVPRSRRQV LPGTSPPATP SGFEEGPPSS 101 150 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 QYPWAIVWGP TVSREDGGDP NSANPGFLPL DYGFAAPHGL ATPHPNSDSM 151 200 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 RGDGDGLSLG EAPATLRPVL FGGRGEGVDP QLYVTITISV IIVLVATGII 201 250 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------P ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------P ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------P bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------P BACU003079/1-1547 FKFCWDRSQK RRRPSGQQGA LRQEESQQPL TDLSPAGVTV LGAFGDSPTP 251 300 ENSP00000229243/1-543 AAAQD----- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 APAQD----- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 APAQD----- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 APAQD----- ---------- ---------- ---------- ---------- BACU003079/1-1547 TPDHEEPRGG PRPGMPQPKG APAFQLNRRH PCRFHASQLE GRMEESHFNS 301 350 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 NPYFWPSIPT VSGQIENTMF INKMKDQLLP EKGCGLAPPH YPTLLTVPAS 351 400 ENSP00000229243/1-543 ---------- ---------- ---------- --------ST QASTPG---- ENSBTAP00000045557/1-542 ---------- ---------- ---------- --------SA STSTPG---- ENSTTRP00000011141/1-513 ---------- ---------- ---------- --------TL STSTPG---- bmy_11495T0/1-524 ---------- ---------- ---------- --------AL STSTPG---- BACU003079/1-1547 VSLPSGISMD TESKSDQLTP HSQASVTQNI TVVPVPSTGL MTAGPGLVIT 401 450 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 SPSGSLVTTA SSAQTFPISA PMIVSALPPG SQALQVVPDL SKKVASTLTE 451 500 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 EGGGGGGGGG TVAAKPPRGR KKKRMLESGL PEMNDPYVLS PEDDDDHQKD 501 550 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 GKTYRCRMCS LTFYSKSEMQ IHSKSHTETK PHKCPHCSKT FANSSYLAQH 551 600 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 IRIHSGAKPY SCNFCEKSFR QLSHLQQHTR IHSKMHTETI KPHKCPHCSK 601 650 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 TFANTSYLAQ HLRIHSGAKP YNCSYCQKAF RQLSHLQQHT RIHTGDRPYK 651 700 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 CAHPGCEKAF TQLSNLQSHR RQHNKDKPFK CHNCHRAYTD ATSLEVHLST 701 750 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 HTVKHAKVYT CTICSRAYTS PPHFQSPGAA PQGGGGGDSN PNPPPQCSFD 751 800 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 LTPYKTAEHH KDICLTVTTS TIQLRAPILS ESWCQLTSYT NSNKKGDKQE 801 850 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 GKARSTLSLY KRERPQVTGT LTKGIENLPF ELQRNFQLMR DLDQRTEDLK 851 900 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 AEIDKLATEY MSSARSLSSE EKLALLRQIQ EAYGKCKGFG DDKVQLAMQT 901 950 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 YEMVDKHIRR LDTDLARFEA DLKEKQIESS DYDSSSSKGK KSEEGGGAVR 951 1000 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 EGRTQKEKKA ARARSKGKNS DEEAPKAAQK KLKLVRTSPE YGMPSVTFGS 1001 1050 ENSP00000229243/1-543 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045557/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011141/1-513 ---------- ---------- ---------- ---------- ---------- bmy_11495T0/1-524 ---------- ---------- ---------- ---------- ---------- BACU003079/1-1547 VHPSDVLDMP VDPNEPTYCL CHQVSYGEMI GCDNPDCSIE WFHFACVGLT 1051 1100 ENSP00000229243/1-543 ------SPLS PTEYERFFAL LTPTWKAETT CRLRATHGCR NPTLVQLDQY ENSBTAP00000045557/1-542 ------SPLS PTEYERFFAL LTPTWKAETT CRLRATHGCR NPTLVQLDQY ENSTTRP00000011141/1-513 ------SPLS PTEYERFFAL LTPTWKAETT CRLRATHGCR NPTLVQLDQY bmy_11495T0/1-524 ------SPLS PTEYERFFAL LTPTWKAETT CRLRATHGCR NPTLVQLDQY BACU003079/1-1547 TKPRGKCPLS PTEYERFFAL LTPTWKAETT CRLRATHGCR NPTLVQLDQY 1101 1150 ENSP00000229243/1-543 ENHGLVPDGA VCSNLPYASW FESFCQFTHY RCSNHVYYAK RVLCSQPVSI ENSBTAP00000045557/1-542 ENHGLVPDGA VCSDLPYASW FESFCQFTQY RCSNHVYYAK RVRCSQPVSI ENSTTRP00000011141/1-513 ENHGLVPEGA VCSDLPHASR FESFCQFTQY RCS-YVYYAK RVGCSQPVSI bmy_11495T0/1-524 ENHGLVPEGA VCSNLPYASW FESFCQFTQY RCSNHVYYAK RIRCSQPVSI BACU003079/1-1547 ENHGLVPEGA VCSDLPYASW FESFCQFTQY RCSNHVYYAK RIRCSQPVSI 1151 1200 ENSP00000229243/1-543 LSPNTLKEIE ASAEV-SPTT MTSPISPHFT VTERQTFQPW PERLSNNVEE ENSBTAP00000045557/1-542 LSPNTLKEVD SSPEVPPPTT ATSPKSSHVT ATERQVFQPW PERLNSNVEE ENSTTRP00000011141/1-513 LSPNTLKEVD TSSEV-PLTT MTSPKSSHIT ATEQQAFQPW PERLNSSVEE bmy_11495T0/1-524 LSPNTLKEVD TSSEV-PLTT MTSPKSSHIT ATERQAFQPW PERLNSNVEE BACU003079/1-1547 LSPNTLKEVD TSSEV-PLTT MTSPKSSHIT ATERQAFQPW PERLNSNVEE 1201 1250 ENSP00000229243/1-543 LLQSSLSLGG QEQAPEHKQE QGVEHRQEPT QEHKQEEGQK QEEQEEEQEE ENSBTAP00000045557/1-542 LLQSSLSLGG QEQGQEPKQE QGQEHKQERG QEHKQEEGQE QEEQEEEQEE ENSTTRP00000011141/1-513 LLQSSLSLGG QDQGQER--- ---------- ---------- -----EGQEE bmy_11495T0/1-524 LLQSSLSLGG QEQGQERRQE QGQE------ ---------- -EEEAEEEEE BACU003079/1-1547 LLQSSLTLGG QDQGQEHRQE QGQE------ ---------E EAEEEEEKEE 1251 1300 ENSP00000229243/1-543 EGKQEEGQGT KEGREAVSQL QTDSEPKFHS ESLSSNPSSF APRVREVEST ENSBTAP00000045557/1-542 E--KQEGQGT EEALESVSRL QADPEPKFRS ELVSSNPFSF TPRVREVEST ENSTTRP00000011141/1-513 E--WEEGQGT KHALEVTSGL -LDPEPKTQS EFVTSNPFSF TPRVREVEST bmy_11495T0/1-524 K--QEEGQGT KEALEAMSGL QADPEPKTES EFASSNPFSF TPRVREVEST BACU003079/1-1547 K--QEEGQGT KEALEAMSGL QADPEPKTQS EFASSNPFSF TPRVREVEST 1301 1350 ENSP00000229243/1-543 PMIMENIQEL IRSAQEIDEM NEIYD--ENS YWRNQNPGSL LQLPHTEALL ENSBTAP00000045557/1-542 PMLMENLQEL IRSAQEMNEM NDVYD--GET IWRSQSPGSL LQLPHVEALL ENSTTRP00000011141/1-513 PMTMENIQEI IQSVQEMDEM NEMNDVYEEN IWKAQSPGSL LQLPHVEALL bmy_11495T0/1-524 PMMMENIQEL IRSVQEMDEM NDVYE--EEN IWRTQSPGSL LQLPHVEALL BACU003079/1-1547 PMMMESIQEL IRSVQEMDEM NDVYE--EEN IWRAQSPGSL LQLPHVEALL 1351 1400 ENSP00000229243/1-543 VLCYSIVENT CIITPTAKAW KYMEEEILGF GKSVCDSLGR RHMSTCALCD ENSBTAP00000045557/1-542 TLCYSIVENT CVITPTAKAW QYLENEILGF GISVCDSLGR RHLAACTLCD ENSTTRP00000011141/1-513 ALCYSIVENT CVITPTAKAW QHLEDEILGF GKSVCDSLGR RHVATCALCE bmy_11495T0/1-524 ALCYSIVENT CVITPTAKAW QHLEDEILGF GKSVCDNLGR RHVATCTLCD BACU003079/1-1547 ALCYSIVENT CVITPTAKAW QHLEDEILGF GKSVCDNLGR RHVATCTLCD 1401 1450 ENSP00000229243/1-543 FCSLKLEQCH SEASLQRQQC DTSHKTPFVS PLLASQSLSI GNQVGSPESG ENSBTAP00000045557/1-542 FCSLKLEQCH SEANLQRQQC DSSHKTPFVS PLLASQSMTI GTQIGSLKSG ENSTTRP00000011141/1-513 FCSLKLEQCR SEASLQRQQC DSSHKTPFVS PLLASQSMSV GTQVGTLKSG bmy_11495T0/1-524 FCSLKLEQCH SEASLQRQQC DSSHKTPFIS PLLASQSMSI GTQIGTLKSG BACU003079/1-1547 FCSLKLEQCH SEASLQRQQC DSSHKTPFIS PLLASQSMSI GTQIGTLKSG 1451 1500 ENSP00000229243/1-543 RFYGLDLYGG LHMDFWCARL ATKGCEDVRV SGWLQTEFLS FQDGDFPTKI ENSBTAP00000045557/1-542 RFYGLDLYGG LRMDFWCARL ATKGCEDNRV ASWLQTEFLS FQDGDFPTRI ENSTTRP00000011141/1-513 RFYALDLYGG LRMDFWCARL ATKGCEDNRV ASWLQTEFLS FQDGDFPTKI bmy_11495T0/1-524 RFYGLDLYAG LRMDFWCARL ATKGCEDNRV ASWLQTEFLS FQDGDFPTKI BACU003079/1-1547 RFYGLDLYAG LLMDFWCARL ATKGCEDNRV ASWLQTEFLS FQDGDFPTKI 1501 1550 ENSP00000229243/1-543 CDTDYIQYPN YCSFKSQQCL MRNRNRKVSR MRCLQNETYS ALSPGKSEDV ENSBTAP00000045557/1-542 CDTEYVQYPN YCAFKSQQCM MRNRDRKVSR MRCLQNETYT VLTPDKSEDL ENSTTRP00000011141/1-513 CDTEYVQYPN YCAFKSQQCR MRNRNRKVSR MRCLQNETYT VLTPAKSEDL bmy_11495T0/1-524 CDTEYVQYPN YCAFKSQQCM MRNRNRKVSR MRCLQNETYS VLTQAKSEDL BACU003079/1-1547 CDTEYVQYPN YCAFKSQQCM MRNRNRKVSR MRCLQNETYT VLTQAKSEDL 1551 1600 ENSP00000229243/1-543 VLRWSQEFST LTLGQFG ENSBTAP00000045557/1-542 VLRWSQEFST LTLGQAG ENSTTRP00000011141/1-513 VLRWSQEFST LTLGQAG bmy_11495T0/1-524 VLRWSQEFST LTLGQAG BACU003079/1-1547 VLRWSQEFST LTLGQAG