KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:03 2014 Check: 00 .. Name: ENSP00000268624/1-665 Len: 750 Check: 3128 Weight: 1.00 Name: ENSBTAP00000045577/1-587 Len: 750 Check: 292 Weight: 1.00 Name: ENSTTRP00000012172/1-643 Len: 750 Check: 6613 Weight: 1.00 Name: bmy_21380T0/1-523 Len: 750 Check: 3860 Weight: 1.00 Name: BACU009704/1-630 Len: 750 Check: 37 Weight: 1.00 // 1 50 ENSP00000268624/1-665 ---MASASQG ADDDGSRRKP RLAASLQISP QPRPWRPLPA QAQSAWGPAP ENSBTAP00000045577/1-587 ---QASAALG TDD-SVRRKP RLAASLQISP GSSPWKPSAS LGQEP---AP ENSTTRP00000012172/1-643 MASQASAALG ANA-GARRKT RLAASLQISP GPSPRRPSAN LGQDPWEIVP bmy_21380T0/1-523 MASQASAALG VDT-GARRKP RLAASLQISP GPSPRRPSAS LGQDPWETVP BACU009704/1-630 MASQASAALG ADT-GACRKP RLAASLQISP GPSPRRPSAS LGQDPWETAP 51 100 ENSP00000268624/1-665 APATYRAE-G GWPQVS-VLR DSGPGAGAGV GELGAARAWE NLGEQMGKAP ENSBTAP00000045577/1-587 APNADNDEPG GQLQASAAAG DGEAWVGAGM GSWGRLGTR- ----RMGRSL ENSTTRP00000012172/1-643 APNSEDAEQG GQLQAS-ATG HGGPGVGARV WELGAARAQE DSRGRMRRSH bmy_21380T0/1-523 APNLDDAEQG GQLQAS-ATG HGGPGVGAHA RELGAARARE DSRGRMGGSP BACU009704/1-630 APNSDDAEQG GQLQAS-ATG H--------- ---------- ---------- 101 150 ENSP00000268624/1-665 RVPVPPAG-- ---------L SLPLKDPPAS QAVSLLTEYA ASLGIFLLFR ENSBTAP00000045577/1-587 RVAVPPAGPA GDFPKITRHR GLQLKDPPLG QAVASLTQYA ANLGVSLIFR ENSTTRP00000012172/1-643 RVSFPSAGP- ---------- GLQIKDPPPG QAVALLTQCA ATLGVSLIFR bmy_21380T0/1-523 KVSFPXAGPA GEFPTAARQL GLQLKDPPPG QAVALLTQCA ASLGVSLIFR BACU009704/1-630 -------GPA GEFPTAARQL GLQLKDPPPG QAVALLTQCA ASLGVSLIFR 151 200 ENSP00000268624/1-665 EDQPPGKVFK YRAPGGEELK AMCLWQVEVL RAFLLRTGWR GLWRGDLDLG ENSBTAP00000045577/1-587 ESQTAD---- ---------- ---------- ---------- ---------- ENSTTRP00000012172/1-643 ENQTADDPFK CRKKRAVCLG EQGTFILGTV Q--------- ------LDVG bmy_21380T0/1-523 EDQTAD---- ---------- ---------- ---------- ---------- BACU009704/1-630 EDQTAD---- ---------- ---------- ---------- ---------- 201 250 ENSP00000268624/1-665 PDSSWANRLP FLLICEMESR IPAVEELGPC FPFSVSAELD GVVCPAGTAN ENSBTAP00000045577/1-587 ---------- ---------- --------PC SPFSVSVELD GVVCPPGTAN ENSTTRP00000012172/1-643 PGTTWARYLP -LVCPLCKVG SGAVSEPNPC LPFSMSVELD GVVCPAGTAY bmy_21380T0/1-523 ---------- ---------- --------PC LPFSVSVELD GVVCPAGTAY BACU009704/1-630 ---------- ---------- --------PC LPFSVSVELG GVVCPAGTAY 251 300 ENSP00000268624/1-665 SKTEAKQQAA LSALCYIRSQ LENPESPQTS SRPPLAPLSV ENILTHEQRC ENSBTAP00000045577/1-587 SKLEAKQQAA LSALHYIRRQ LEGPEPPKTP NQPPLAPLSI ENIVTHEQRC ENSTTRP00000012172/1-643 SKAEAEQQAA LAALHYIQHR LESPETPKTP SWPPLAPLSI ENILTHEQRC bmy_21380T0/1-523 NKPEAKQQAA LSALHYIQRR LESPETPKTP SRPPLAPLSI ENILTHEQRC BACU009704/1-630 SKPEAKQQAA LSALHYIQRR LESPETPKTP SQHPLAPLSI ENILTHEQRC 301 350 ENSP00000268624/1-665 AALVSAGFDL LLDERSPYWA CKGTVAGVIL ERGWAVSAPS CTEIPRARGH ENSBTAP00000045577/1-587 AAVVSAGFDR LVDASSPYRA CKGTVAAVIL ER-------- --EVPGARGH ENSTTRP00000012172/1-643 AAVVSAGFDR LVDASSQYWA CKGTVAAVIL ER--VISAPF PAEVPGAQGH bmy_21380T0/1-523 AAVVSAGFDR LVDASSQYWA CKGTVAAVIL ER-------- --EVPGAQGH BACU009704/1-630 AAVVSAGFDR LVDASSQYWA CKGTVAAVIL ER-------- --EVPGAQGH 351 400 ENSP00000268624/1-665 VKEIYKLVAL GTGSSCCAGW LEFSGQQLHD CHGLVIARRA LLRFLFRQLL ENSBTAP00000045577/1-587 AKETYQLVAL GTGGGSCTGW LDFSGRQLHD CHGLVVARRA LLRFLFRQLL ENSTTRP00000012172/1-643 AKEIYQLVAL GTGSGSCAGW LDFSGRQLHD GHGLVVARRA LLRFLFRQLI bmy_21380T0/1-523 AKEIYQLVAL GTGGGSCARW LDFSGRQLHD CHGLVVARRA LLRFLFRQLL BACU009704/1-630 AKEIYQLVAL GTGGGSCARW LDFSGRQLHD CHGLVVPRRA LLRFLFRQLL 401 450 ENSP00000268624/1-665 LATQGGPKGK EQSVLAPQPG PGPPFTLKPR VFLHLYISNT PKGAARDIYL ENSBTAP00000045577/1-587 LATQGGPTGK EKSVLAPKPG PGPPFALKPR IFLHLYVSNT PKGAAYDIYL ENSTTRP00000012172/1-643 TATQGGPKGK EQSVVVPQPG SGPPFALKPR VFMHLYVSNT PKGAAHDIYL bmy_21380T0/1-523 LATQGGPKGK ERSVVVAQPG SGPPFALKPR IFLHLYVSNT PKGAAHDICL BACU009704/1-630 LATQGGPKGK ERSVVVAQPG SGPPFALKPR IFLHLYVSNT PKGAAHDICL 451 500 ENSP00000268624/1-665 PPTSEGGLPH SPPMRLQAHV LGQLKPVCYV APSLCDTHVG CLSASDKLAR ENSBTAP00000045577/1-587 PPSLEGSLLH GPPLRLQAHI QGELKPVCYV APALRDTHVG CLSASDKLAR ENSTTRP00000012172/1-643 -------LPH SCHLRLQAHI QGRLMPVCYV APALRDTHVG CLSASDKLAR bmy_21380T0/1-523 PPASEGGLPH SRLLRLQAHI QGRLKPVCYV APALRDTHVG CLSASDKLAR BACU009704/1-630 PPASEGGLPH SPLLCLQAHI QGRLKPVCYV APALRDTHVA CLSASDKLAR 501 550 ENSP00000268624/1-665 WAVLGLGGAL LAHLVSPLYS TSLILADSCH DPPTLSRAIH TRPCLDSVLG ENSBTAP00000045577/1-587 WAVLGLGGAL LAHFLPPLYT TSLVLADTCH DPPTLSRAIH TRPSLDRLVG ENSTTRP00000012172/1-643 WAVLGLGGAL LAHFLPPVYA SSLVLADPCQ NTPALGRAIH ARPDLDGALG bmy_21380T0/1-523 WAVLGLGGAL LAHFLPPVYA SSLVLADPCQ NTPALGRVIH ARPGLDRALG BACU009704/1-630 WAVLGLGGGL LAHFLPPVYA SSLVVADPCQ NTPALDRVIH ARPGLDRALG 551 600 ENSP00000268624/1-665 PCLPPPYVRT ALHLFAGPPV APSEPTPDTC RGLSLNWSLG DPGIEVVDVA ENSBTAP00000045577/1-587 PGLPAPYTRT TLHLFAGPSV APSNLTPNTC QGLSLNWSLG DPDIEVVDVA ENSTTRP00000012172/1-643 PCLPPPYTRT MLHLFAGPSV APSDLPSNTC QGLSLNWSLG DPDVEVVDVA bmy_21380T0/1-523 PCLPPPYTRT TLHLFEGPSV APSDPPSNTC QGLSLNWSLG DPDVEVVDVA BACU009704/1-630 PCLPPPYTRT TLHLFEGPSV APSDPPSNTC QGLSLNWSLG DPDVEVVDVA 601 650 ENSP00000268624/1-665 TGRVKANAAL GPPSRLCKAS FLRAFHQAAR AVGKPYLLAL KTYEAAKAGP ENSBTAP00000045577/1-587 TGRVKADTAP GPPSRLCKAA FLRAFRQAAH ALGKSHLLAL QTYEAAKAGP ENSTTRP00000012172/1-643 TGRVKADAAL GPPSRLCKAA FLWAFRQAAR ALGKSHLLAL KTYEAAKAGP bmy_21380T0/1-523 TGRVKAE--- ---------- ---------- ---------- ---------- BACU009704/1-630 TGRVKADAAL GPPSRLCKAA FLWAFRQTAR ALGKSHLLAL KTYEAAKAGP 651 700 ENSP00000268624/1-665 YQEARRQLSL LLDQQGLGAW PSKPLV---- ---------- ---------- ENSBTAP00000045577/1-587 YQEARQQLSV LLDQQGLGAW PSKPLV---- ---------- ---------- ENSTTRP00000012172/1-643 YQEARQQLSL LLDQQGLGAW PSKPLV---- ---------- ---------- bmy_21380T0/1-523 ---------- ---------- ---------- ---------- ---------- BACU009704/1-630 YQEARQQLSV LLDQQGLGAW PSKPLLQAPG VCPGPLHCAA PPRVWSSPLS 701 750 ENSP00000268624/1-665 -----GKFRN ---------- ---------- ---------- ---------- ENSBTAP00000045577/1-587 -----GKFKN ---------- ---------- ---------- ---------- ENSTTRP00000012172/1-643 -----GKFRN ---------- ---------- ---------- ---------- bmy_21380T0/1-523 ---------- ---------- ---------- ---------- ---------- BACU009704/1-630 TDDWYGKQRK TERPGWEPVT GWAEPEWGVI ASGTQHRKVS NQKKKDRYGA