KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:04 2014 Check: 00 .. Name: ENSP00000203629/1-525 Len: 621 Check: 7739 Weight: 1.00 Name: ENSBTAP00000045595/1-516 Len: 621 Check: 7000 Weight: 1.00 Name: ENSTTRP00000009600/1-458 Len: 621 Check: 1939 Weight: 1.00 Name: bmy_11488T0/1-551 Len: 621 Check: 6440 Weight: 1.00 Name: BACU003075/1-369 Len: 621 Check: 4248 Weight: 1.00 // 1 50 ENSP00000203629/1-525 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000045595/1-516 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009600/1-458 ---------- ---------- ---------- ---------- ---------- bmy_11488T0/1-551 MGKWVVQGRE GQKFLGKENS QEGGGGVERV AGTPRTEEIN KGSATTGVEI BACU003075/1-369 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000203629/1-525 ---------- ---------- ---------- ------MWEA QFLGLLFLQP ENSBTAP00000045595/1-516 ---------- ---------- ---------- -----MLWEA WFQVWLFLQL ENSTTRP00000009600/1-458 ---------- ---------- ---------- ------TWEA RFPVWLLSEL bmy_11488T0/1-551 LSLQHPLCRT SLLNISPSPL SDLFPLEGCV AQASEEMREA RFPAWLLLQL BACU003075/1-369 ---------- ---------- ---------- ------MREA RFPAWLLLQL 101 150 ENSP00000203629/1-525 LWVAPVKPLQ PGAEVPVVWA QEGAPAQLPC SPTIPLQDLS LLRRAGVTWQ ENSBTAP00000045595/1-516 LWAAAVEAPE PGAEVPVVWA QEGAPAQLPC SPTIPLQDLS LPRTRQVTWQ ENSTTRP00000009600/1-458 LWAA-VEAPD PGAEVPVVWA QEGAPAQLPC SPTIPLQDLS LLRTRQVTWQ bmy_11488T0/1-551 LWAAAVEAPD PGAEVPVVWA QEGAPAQLPC SPTIPLQDLS LLRTRQVTWQ BACU003075/1-369 LWAAAVEAPD PGAEVPVVWA QEGAPAQLPC SPTIPLQDLS LLRTRQVTWQ 151 200 ENSP00000203629/1-525 HQPDSGPPAA APGHPLAPGP HPAAPSSWGP RPRRYTVLSV GPGGLRSGRL ENSBTAP00000045595/1-516 HVPESG---- ---------- -SAAPTPRGP GPRRYTVLRL APGGLRIGKL ENSTTRP00000009600/1-458 HLPDSE---- ---------- -PAALSPRGP GPRRYTVLRL APGGLRVGRP bmy_11488T0/1-551 HLPDSE---- ---------- -PAALSPRGP GPRRYTVLRL APGGLRVGRP BACU003075/1-369 HLPDSA---- ---------- ---------- -PRRYTVLRL APGGLRVGRP 201 250 ENSP00000203629/1-525 PLQPRVQLDE RGRQRGDFSL WLRPARRADA GEYRAAVHLR DRALSCRLRL ENSBTAP00000045595/1-516 PLQPRVQLEE MGLQRGDFSL WLRPARRADA GEYHAAVRFG NRALACRLRL ENSTTRP00000009600/1-458 PLQPRVQLDE RGLQRGDFSL WLRPARRADA GEYHAAVRLG DRALACRLRL bmy_11488T0/1-551 PLQPRVQLDE RGLQRGDFSL WLRPARRADA GEYHAAVRLG DRALACRLHL BACU003075/1-369 PLQPRVQLDE RGLQRGDFSL WLRPARRADA GEYHAAVRLG DRALACRLRL 251 300 ENSP00000203629/1-525 RLGQASMTAS PPGSLRASDW VILNCSFSRP DRPASVHWFR NRGQGRVPVR ENSBTAP00000045595/1-516 RVGQAAVTAS PPGPLWTSSW VVLNCSFSRP DLPASVHWF- -RGPGRVPVQ ENSTTRP00000009600/1-458 RVGQAAVTAS PLGSLWTSSS VILNCSFSRP DLPASVHWF- -RDPGRVPVQ bmy_11488T0/1-551 RVGQAAVTAS PLGSLWTSSS VILNCSFSRP DLPASVHWF- -RGPGRVPVQ BACU003075/1-369 RVGQAA---- ---------- ---------- ---------- ---------- 301 350 ENSP00000203629/1-525 ESPHHHLAES FLFLPQVSPM DSGPWGCILT YRDGFNVSIM YNLTVLGLEP ENSBTAP00000045595/1-516 ESPHHHLVGN FLFLPQVSSL DSGTWGCSLT YRDGFNVSIT YNLAVLGLEP ENSTTRP00000009600/1-458 ESPHHLLAGN FLFLPHVSPL DSGTWGCILT YRDGFNVSTT YSLTVLGLEP bmy_11488T0/1-551 ESPHHLLAGN FLFLPHVSPL DSGTWGCTLT YRDGFNVSTT YSLTVLGLEP BACU003075/1-369 -------AGN FLFLPHVSPL DSGTWGCTLT YRDGFNVSTT YSLTVLGLEP 351 400 ENSP00000203629/1-525 PTPLTVYAGA GSRVGLPCRL PAGVGTRSFL TAKWTPPGGG PDLLVTGDNG ENSBTAP00000045595/1-516 RATLTVYAGA GSKVELPCRL PPGVGIQSSL TAMWTPPGEG PDLLVAGDRN ENSTTRP00000009600/1-458 PVPLTVYAGA GSRVELPCHL PLGVETQSSL TATWTPPGGG PDLLVAGDHG bmy_11488T0/1-551 PVPLTVYAGA GSRVELPCRL PPGVETQSSL TATWAPPGGG PDLLVAGDHG BACU003075/1-369 PVPLTVYAGA GSRVELPCRL PPGVETQSSL TATWAPPGGG PDLLVAGDHG 401 450 ENSP00000203629/1-525 DFTLRLEDVS QAQAGTYTCH IHLQEQQLNA TVTLAIITVT PKSFGSPGSL ENSBTAP00000045595/1-516 NFTLRLEAVG QAQAGTYTCR VHLQGRQLSA TVTLAVITVT PKPYGSSGSL ENSTTRP00000009600/1-458 NFTLLLEAVG QAQAGTYTCG VHLQGQQLTA TVTLAVITVT PKSHGSPGNL bmy_11488T0/1-551 NFTLLLEAVG QAQAGTYTCR VHLQGQQLSA TVTLAVITVT PKSHGLPGSL BACU003075/1-369 NFTLLLEAVG QAQAGTYTCR VHLQGQQLSA TVTLAVITGA QRSGRAPGAR 451 500 ENSP00000203629/1-525 GKLLCEVTPV SGQERFVWSS LDTPSQRSFS GPWLEAQEAQ LLSQPWQCQL ENSBTAP00000045595/1-516 RKPFCEVTPA SGQERFVWSP LDKRSQRRSP GPWLLTPDAR PLSQPWQCHL ENSTTRP00000009600/1-458 RKLLCEVTPA SGREHFVWSP LDERSRRTSA GPWLLMPEAR LLSQPWQCRL bmy_11488T0/1-551 RKLLCEVTPA SGQEHFLWSP LDERSHRTSP GPWLLMPEAR LLSQPWQCRL BACU003075/1-369 K--------- TGHLPLLILG I--------- -LFLLV---- LVTGAF---- 501 550 ENSP00000203629/1-525 YQGERLLGAA VYFTELSSPG AQRSGRAPGA LPAGHLLLFL ILGVLSLLLL ENSBTAP00000045595/1-516 YQGERLLGTA VYLTELSHPG AQRSGRALGA GRTAHLPL-L ILGLLFLLLL ENSTTRP00000009600/1-458 YQGQRLLGTA VYLAELSRPG AQRSGGAPGA WETGHL---- ---------- bmy_11488T0/1-551 YQGQRLLGTA ---------- ---------- ---------- ---------- BACU003075/1-369 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000203629/1-525 VTGAFGFHLW RRQWRPRRFS ALEQGIHPPQ AQSKIEELEQ EPEPEPEP-- ENSBTAP00000045595/1-516 VTGASSFHLW RRQWRPRRFS ALEHGTHPSQ ASSKTGELEP ELEPEPDP-- ENSTTRP00000009600/1-458 ---------- ---------- ---------- ---------- -----PLLIL bmy_11488T0/1-551 ---------- ---WRPRRFS ALEHGTHPPQ AQSKIEDPEP DPEPDPDPEP BACU003075/1-369 -----SFHLW RRRWRPRRFS ALEHGTHPPQ AQSKIEDPEP EPEPEPEP-- 601 650 ENSP00000203629/1-525 ------EPEP EPEPEPE--Q L ENSBTAP00000045595/1-516 EVEPEPEPEP ESQPQLQPEQ P ENSTTRP00000009600/1-458 GILFLLVLVT GAFSFHLRRR R bmy_11488T0/1-551 EQEPEQEPEP EPEPQPQLKQ P BACU003075/1-369 ------EPEP EPEPQPQLKQ P