KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:07 2014 Check: 00 .. Name: ENSP00000256861/1-956 Len: 959 Check: 8913 Weight: 1.00 Name: ENSTTRP00000004756/1-918 Len: 959 Check: 6013 Weight: 1.00 Name: ENSBTAP00000045691/1-940 Len: 959 Check: 4186 Weight: 1.00 Name: bmy_00655T0/1-641 Len: 959 Check: 7451 Weight: 1.00 Name: BACU001766/1-877 Len: 959 Check: 3644 Weight: 1.00 // 1 50 ENSP00000256861/1-956 MLLLLGLCLG LSLCVGSQEE AQSWGHSSEQ DGLRVPRQVR LLQRLKTKPL ENSTTRP00000004756/1-918 ---------- ---------- ---------- VALRVPRQVR LLQRLKTKPL ENSBTAP00000045691/1-940 MLPLLGLCFA LPLCAGLLEE ARSWEDTSDQ VGLRIPRQVR LLQRLKTKPL bmy_00655T0/1-641 ---------- ---------- ---------- ---------- ---------- BACU001766/1-877 MLPLLGLCLA LPFCAGSLEE AQSWGDTSEQ VKRNKVTCLR ---------- 51 100 ENSP00000256861/1-956 MTEFSVKSTI ISRYAFTTVS CRMLNRASED QDIEFQMQIP AAAFITNFTM ENSTTRP00000004756/1-918 MTEFSVKSTI ISRYAFTTVA CRLLNRASED QEITFQMQIP AAAFITNFTM ENSBTAP00000045691/1-940 MTEFSVKSTI ISRYAFTTVA CRMLNRGSED QEVTFQMQIP AAAFITNFTA bmy_00655T0/1-641 ---------- ---------- ---------- ---------- ---------- BACU001766/1-877 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000256861/1-956 LIGDKVYQGE ITEREKKSGD RVKEKRNKTT EENGEKGTEI FRASAVIPSK ENSTTRP00000004756/1-918 LIGDKVYQGE ITEKEKKNGD KVKEKRNKTT EDSGEKGTET FRASVVLPSK ENSBTAP00000045691/1-940 LIGDKVYQGE ITEREKRNGD KVKEKRNKTI EDNGEKGTET FRASAVLPSK bmy_00655T0/1-641 ---------- ---------- ---------- ---------M YQDSAVWP-- BACU001766/1-877 LIGDKVYQGE ITEKEKKNGD KVKEKRNKTT EDSGEKGTET FRASVVLPSK 151 200 ENSP00000256861/1-956 DKAAFFLSYE ELLQRRLGKY EHSISVRPQQ LSGRLSVDVN ILESAGIASL ENSTTRP00000004756/1-918 DKAAFLLSYE ELLQRRLGKY EHVVSVRPQQ LVGRLTVEVT ILERSGIAAL ENSBTAP00000045691/1-940 DKAAFLLSYE ELLQRRLGKY EHVVSVRPQQ LVGRLTVEVT VLERPGIAEL bmy_00655T0/1-641 ---------- ---------- ---------- ---------- ---------- BACU001766/1-877 DKAAFLLSYE ELLQRRLGKY EHVVSVRPQQ LAGRLTVEVT VLERSGIAAL 201 250 ENSP00000256861/1-956 EVLPLHNSRQ RGSGRGEDDS GPPPSTVINQ NETFANIIFK PTVVQQARIA ENSTTRP00000004756/1-918 EVLGLQNSRR QGSGRGQDDS GPPPSTVINQ NETFAKVVFK PTVVQQAKIA ENSBTAP00000045691/1-940 EVLGLQNSRQ RGSGRGPDDS GPPPSTVINQ NETFAKVVFK PSVVQQAKIA bmy_00655T0/1-641 ---------- ---------- ---------- ---------- ---------- BACU001766/1-877 EVLGLQNSRR QGSGRGQDDS GPPPSTVINQ NETFAKVVFK PTVVQQAKIA 251 300 ENSP00000256861/1-956 QNGILGDFII RYDVNREQSI GDIQVLNGYF VHYFAPKDLP PLPKNVVFVL ENSTTRP00000004756/1-918 QNGILGDFII RYDVNREQSI GDIQVLNGYF VHYFAPKDLP PLPKNVVFVL ENSBTAP00000045691/1-940 QNGILGDFIV RYDVNREQSI GDIQVLDGYF VHYFAPKDLP PLPKNVVFVL bmy_00655T0/1-641 ---------- ---------- ----VAAGY- ---------- ---------- BACU001766/1-877 QNGILGDFII RYDVNREQSI GDIQVLNGYF VHYFAPKDLP PLPKNVVFVL 301 350 ENSP00000256861/1-956 DSSASMVGTK LRQTKDALFT ILHDLRPQDR FSIIGFSNRI KVWKDHLISV ENSTTRP00000004756/1-918 DSSASMVGTK LRQTKDALFT ILHDLRPQDR FNIIGFSNRV KVWKDHLVSV ENSBTAP00000045691/1-940 DSSASMVGTK LRQTKDALFT ILHDLRPQDH FNIVGFSNRI KVWKDHLVSV bmy_00655T0/1-641 DTG------- ---TKDALFT ILHDLRPQDR FNIIGFSNRV KVWKDHLVSV BACU001766/1-877 DSSASMVGTK LRQTKDALFT ILHDLRPQDR FNIIGFSNRV KVWKDHLVSV 351 400 ENSP00000256861/1-956 TPDSIRDGKV YIHHMSPTGG TDINGALQRA IRLLNKYVAH SGIGDRSVSL ENSTTRP00000004756/1-918 TPNNIRDGKV YIHHMSPTGG TDINGALQRG IRLLNDFVAH NDIEDRSVSL ENSBTAP00000045691/1-940 TPNSIRDGKV YIHHMSPSGG TDINGALQRG IQLLNDYVAH NDIEDRSVSL bmy_00655T0/1-641 TPNNIRDGKV YIHHMSPTGG TDINGALQRG IRLLNDFVAH NDIEDRSVSL BACU001766/1-877 TPNNIRDGKV YIHHMSPTGG TDINGALQRG IRLLSDFVAH NDIEDRSVSL 401 450 ENSP00000256861/1-956 IVFLTDGKPT VGETHTLKIL NNTREAARGQ VCIFTIGIGN DVDFRLLEKL ENSTTRP00000004756/1-918 VIFLTDGKPT AGETHTPKIL NNTREAARGR VCIFTVGIGA DVDFKLLEML ENSBTAP00000045691/1-940 VVFLTDGKPT VGETHTLKIL NNTREAARGR VCIFTVGIGA DVDFKLLEKL bmy_00655T0/1-641 LVFLTDGKPT AGETHTLKIL NNTREAARGR VCIFTVGIGA DVDFRLLEKL BACU001766/1-877 LIFLTDGKPT AGETHTLKIL NNTREAARGR VCIFTVGIGA DVDFRLLEKL 451 500 ENSP00000256861/1-956 SLENCGLTRR VHEEEDAGSQ LIGFYDEIRT PLLSDIRIDY PPSSVVQATK ENSTTRP00000004756/1-918 SLENCGLTRH VHEDHDARAQ LIGFYDEIRT PLLSDIRVDY PVGLVEHATR ENSBTAP00000045691/1-940 SLENCGLTRR VHEDHDARAQ LIGFYDEIRT PLLSDIRVDY PPSLVERATR bmy_00655T0/1-641 SLENCGLTRH VHEDHDARAQ LIGFYDEIRT PLLSDIRVDY PPGLVEHATR BACU001766/1-877 SLENCGLTRH VHEDHDARAQ LIGFYDEIRT PLLSDIRVDY PPGLVEHATR 501 550 ENSP00000256861/1-956 TLFPNYFNGS EIIIAGKLVD RKLDHLHVEV TASNSKKFII LKTDVPVRPQ ENSTTRP00000004756/1-918 TLFPNYFNGS EIIIAGKLVD KEMDRLHVEV TASNSKKFVV LKKDVPVEPR ENSBTAP00000045691/1-940 TLFPNYFNGS EIVIAGKLVD RAMDRLHVEV TASNSKKFVV LKKDVPVEPR bmy_00655T0/1-641 TLFPNYFNGS EIIIAGKLVD REMDRLHVEV TASNSKKFVV LKKDVPVEPW BACU001766/1-877 TLFPNYFNGS EIIIAGKLVD REMDRLHVEV TASNSKKFVV LKKDVPLEPR 551 600 ENSP00000256861/1-956 KAGKDVTGSP RPGGDGEGDT NHIERLWSYL TTKELLSSWL QSDDEPEKER ENSTTRP00000004756/1-918 RMGNDVPGSP RPKGGGQEDP NHLERLWSYL TLKELLSSWL QSDEQPERER ENSBTAP00000045691/1-940 KVGIDVSQSP RPRGRGQEEP NHLERLWSYL TLKELLSAWL QSIEEPERER bmy_00655T0/1-641 RMGNDVPGSP RPKAGGQEDP NHLERLWSYL TLKELLSSWL QSVEEPEREQ BACU001766/1-877 RMGNDVPGIP RPKGGGQEDP NHLERLWSYL TLKELLSSWL QSVEEPEREQ 601 650 ENSP00000256861/1-956 LRQRAQALAV SYRFLTPFTS MKLRGPVPRM DGLEEAHGMS A---AMGPEP ENSTTRP00000004756/1-918 LRQEVQALAL NHRFLAPFTS MTLK-SAPRT ETPEDAYGTS A---ATGPET ENSBTAP00000045691/1-940 LRQEAQALAV NHHFLIPFTS MTLK-SAPRT EAPEAAYGMS STSMATGPET bmy_00655T0/1-641 LRQEVQALAV NHRFLTPFTS MTLK-SAPRT ETPEDAYGTP A---ATGPET BACU001766/1-877 LRQEVQALAV NHRFLTPFTS MTLK-SAPRT ETPEDAYGTP A---ATGPET 651 700 ENSP00000256861/1-956 VVQSVRGAGT QPGPLLKKPY QPRIKISKTS VDGDPHFVVD FPLSRLTVCF ENSTTRP00000004756/1-918 VMQSLRGAHL QPGPALKKPY NPRIKVSKTS XXXXXXXXXX XXXXXXXXXX ENSBTAP00000045691/1-940 VMQSLRGTHL QPGPAVKKPY NPRIKISKTS ADGDPHFVVD FPLSNLTVCF bmy_00655T0/1-641 VMQSLRGAHL HPGPALKKPY NPRIKVSKTS ADGDPHFVVD FPLSNLTVCF BACU001766/1-877 VMQSLRGAHL QPGPALKEPY NPRIKVSKTS ADGDPHFVVD FPLSNLTVCF 701 750 ENSP00000256861/1-956 NIDGQPGDIL RLVSDHRDSG VTVNGELIGA PAPPNGHKKQ RTYLRTITIL ENSTTRP00000004756/1-918 XXXXXXXXXX XXXXXXXXXX VTVNGELIGA PAPPNGHKKQ RTYFRTITIL ENSBTAP00000045691/1-940 NIDGEPGHIL RLVSDHADSG VTVNGELIGA PAPPNGHKKQ RTYFRTITIL bmy_00655T0/1-641 NIDGQPGHIL RLVSDHADSG VTVNGELIGA PAPPNGHKKQ RTYFRTITIL BACU001766/1-877 NIDGQPGHIL RLVSDHADSG VTVNGELIGA PAPPNGHKKQ RTYFRTITIL 751 800 ENSP00000256861/1-956 INKPERSYLE ITPSRVILDG GDRLVLPCNQ SVVVGSWGLE VSVSANANVT ENSTTRP00000004756/1-918 VNKPERSYLE ITPTRVIVDG GDRLVLPCNQ SAAVGSQGLE VSVSANAKVT ENSBTAP00000045691/1-940 VNKPERSYLE ITPSRVIVDG GDRLVLPCNQ SAVVGRRGLE VSVSANASVT bmy_00655T0/1-641 VNKPERSYLE ITPTRVIVDG GNRLVLPCNQ SAAVGSQGLE VSVSANAKVT BACU001766/1-877 VNKPERSYLE ITPTRVIVDG GNRLVLPCNQ SAAVGSQGLE VSVSANAKVT 801 850 ENSP00000256861/1-956 VTIQGSIAFV ILIHLYKKPA PFQRHHLGFY IANSEGLSSN CHGLLGQFLN ENSTTRP00000004756/1-918 IAIQGNVAFV ILLHLYKKPA PYQRNHLGFY VANGQGLSGN CHGLLGQFLN ENSBTAP00000045691/1-940 VSIQGTVAFV VLLHLYKKPA PYQRNHLGFY IANGQGLSSN CHGLLGQFLN bmy_00655T0/1-641 VAIQGNVAFV ILLHLYKKPA AYQRNHLGFY VANGQGLSGN CHGLLGQFLN BACU001766/1-877 VAIQGNVAFV ILLHLYKKPA AYQRNHLGFY VANGQGLSDN CHGLLGQFLN 851 900 ENSP00000256861/1-956 QDARLTEDPA GPSQNLTHPL LLQVGEGPEA VLTVKGHQVP VVWKQRKIYN ENSTTRP00000004756/1-918 QEARLT---- GLGRSPAHPS VPETGERSEA VLEVKGHQVP VVWKQRKIYN ENSBTAP00000045691/1-940 QEARLI---- GLSKSPAHPP VPEAGERSEA VLEVKGRQVP VVWKQRRIYN bmy_00655T0/1-641 QEARLT---- ELGKNPAHPS VPEAGERSEA VLEVKGHQVP VVWKQRKIYN BACU001766/1-877 QEARLT---- GLSKNPAHPS VPEAGERSEA VLEVKGHQVP VVWKQRKIYN 901 950 ENSP00000256861/1-956 GEEQIDCWFA RNNAAKLIDG EYKDYLAFHP FDTGMDTWPG NVQGALKLAA ENSTTRP00000004756/1-918 GEEQVDCWFA RNNAANLIDG EYKDYLAAHP FDSE-HLWPR HIPGTLTPAA ENSBTAP00000045691/1-940 GEEQVDCWFA RNNAAGLIDG EYKGYLAAHP FDSETAFGPG LSQGL----- bmy_00655T0/1-641 GEEQVDCWFA RNNAANLIDG GYKDYLAAHP FDSETTFGLG TSRGL----- BACU001766/1-877 GEEQVDCWFA RNNAANLIDG GYKDYLAAHP FDSETTFGPG TSRGL----- 951 1000 ENSP00000256861/1-956 LKMQVHEGQ ENSTTRP00000004756/1-918 VR-QERQG- ENSBTAP00000045691/1-940 --------- bmy_00655T0/1-641 --------- BACU001766/1-877 ---------