KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:08 2014 Check: 00 .. Name: ENSP00000389326/1-805 Len: 805 Check: 3883 Weight: 1.00 Name: ENSBTAP00000045721/1-804 Len: 805 Check: 3769 Weight: 1.00 Name: ENSTTRP00000003366/1-804 Len: 805 Check: 6653 Weight: 1.00 Name: bmy_01272T0/1-620 Len: 805 Check: 3930 Weight: 1.00 Name: BACU005292/1-804 Len: 805 Check: 7012 Weight: 1.00 // 1 50 ENSP00000389326/1-805 MSSSSWLLLS LVAVTAAQST IEEQAKTFLD KFNHEAEDLF YQSSLASWNY ENSBTAP00000045721/1-804 MTGSFWLLLS LVAVTAAQST TEEQAKTFLE KFNHEAEDLS YQSSLASWNY ENSTTRP00000003366/1-804 MSGSFWLLLS LVAVTAAQSA TEERAKTFLQ KFDREAEDLS YQSSLASWNY bmy_01272T0/1-620 MSGSFWLLLS LVAVTAAQST TEEQAKTFLQ EFDREAENLS YQSSLASWNY BACU005292/1-804 MSGSFWLLLS LVAVTAAQST TEEQAKTFLQ KFDHEAEDLS YRSSLASWNY 51 100 ENSP00000389326/1-805 NTNITEENVQ NMNNAGDKWS AFLKEQSTLA QMYPLQEIQN LTVKLQLQAL ENSBTAP00000045721/1-804 NTNITDENVQ KMNEARAKWS AFYEEQSRMA KTYSLEEIQN LTLKRQLKAL ENSTTRP00000003366/1-804 NTNITDENVQ KMNAAGAKWS AFYEEQSRIA KTYPLEEIRN LTLKRQLQVL bmy_01272T0/1-620 NTNITDENVQ KMNAARAEWS AFYEERSRTA KTYPLEEIQN LTLKRQLQAL BACU005292/1-804 NTNITDENVQ KMNAARAKWS AFYEEQSRIA KTYPLEEIQN LTLKRQLQAL 101 150 ENSP00000389326/1-805 QQNGSSVLSE DKSKRLNTIL NTMSTIYSTG KVCNPDNPQE CLLLEPGLNE ENSBTAP00000045721/1-804 QHSGTSALSA EKSKRLNTIL NKMSTIYSTG KVLDP-NTQE CLALEPGLDD ENSTTRP00000003366/1-804 QQSGTSVLSA DKSKRLNAIL STMSTIYSSG KVLDP-NTQE SLVLEPGLDD bmy_01272T0/1-620 QQSGTSVLSA DKSKRLNTIL NTMSTIYSSG KVLDP-NTQE RLVLEPGLDD BACU005292/1-804 QQSGTSVLSA DKSKRLNTIL NTMSTIYSSG KVLDP-NTQE YLVLEPGLDD 151 200 ENSP00000389326/1-805 IMANSLDYNE RLWAWESWRS EVGKQLRPLY EEYVVLKNEM ARANHYEDYG ENSBTAP00000045721/1-804 IMENSRDYNR RLWAWEGWRA EVGKQLRPLY EEYVVLENEM ARANNYEDYG ENSTTRP00000003366/1-804 IMENSKDYNR RLWAWEGWRA EVGKQLRPLY EEYVVLENEM ARANXXXXXX bmy_01272T0/1-620 IMENSKDYNR RLWAWEGWRA EVGKQLRPLY EEYVVLENEM ARANNYEDYG BACU005292/1-804 IMENSEDYNR RLWAWEGWRA EVGKQLRPFY EEYVVLENEM ARANNYEDYG 201 250 ENSP00000389326/1-805 DYWRGDYEVN GVDGYDYSRG QLIEDVEHTF EEIKPLYEHL HAYVRAKLMN ENSBTAP00000045721/1-804 DYWRGDYEVT GAGDYDYSRD QLMKDVERTF AEIKPLYEQL HAYVRAKLMH ENSTTRP00000003366/1-804 XXXXXXXEVT GAGDYDYSRD QLIRDVERTF AEIKPLYEQL HAYVRAKLMD bmy_01272T0/1-620 DYWRGDYEVT GAGGYDYSRD QLIADVERTF AEIKPLYEQL HAYVRAKLMD BACU005292/1-804 DYWRGDYEVT GADGYDYSRN QLIADVERTF AEIKPLYEQL HAYVRAKLMD 251 300 ENSP00000389326/1-805 AYPSYISPIG CLPAHLLGDM WGRFWTNLYS LTVPFGQKPN IDVTDAMVDQ ENSBTAP00000045721/1-804 TYPSYISPTG CLPAHLLGDM WGRFWTNLYS LTVPFEHKPS IDVTEKMENQ ENSTTRP00000003366/1-804 AYPSRISPTG CLPAHLLGDM WGRFWTNLYP LTVPFGERPS IDVTKEMQNQ bmy_01272T0/1-620 AYPSRISPTG CLPAHLLGDM WGRFWTNLYP LTVPFGEKPS IDVTKEMQNQ BACU005292/1-804 AYPSRISPTG CLPAHLLGDM WGRFWTNLYP LTVPFGEKPS IDVTKEMQNQ 301 350 ENSP00000389326/1-805 AWDAQRIFKE AEKFFVSVGL PNMTQGFWEN SMLTDPGNVQ KAVCHPTAWD ENSBTAP00000045721/1-804 SWDAERIFKE AEKFFVSISL PYMTQGFWDN SMLTEPGDGR KVVCHPTAWD ENSTTRP00000003366/1-804 SWDAKRIFKE AEKFFVSIGL PNMTQGFWDN SMLTEPGDGR KVVCHPTAWD bmy_01272T0/1-620 SWDAKRIFKE AEKFFVSIGL PHMTQGFWVN SMLTEPGDGR KVVCHPTAWD BACU005292/1-804 SWDAKRIFKE AEKFFVSIGL PNMTQEFWVN SMLTEPGDGR KVVCHPTAWD 351 400 ENSP00000389326/1-805 LGKGDFRILM CTKVTMDDFL TAHHEMGHIQ YDMAYAAQPF LLRNGANEGF ENSBTAP00000045721/1-804 LGKGDFRIKM CTKVTMDDFL TAHHEMGHIQ YDMAYAAQPY LLRNGANEGF ENSTTRP00000003366/1-804 LGKGDFRIKM CTKVTMDDFL TAHHEMGHIQ YDMAYATQPY LFRNGANEGF bmy_01272T0/1-620 LGKGDFRIKM CTKVTMDDFL TAHHEMGHIQ YDMAYATQPY LLRNGANEGF BACU005292/1-804 LGKGDFRIKM CTKVTMDDFL TAHHEMGHIQ YDMAYATQPF LLRNGANEGF 401 450 ENSP00000389326/1-805 HEAVGEIMSL SAATPKHLKS IGLLSPDFQE DNETEINFLL KQALTIVGTL ENSBTAP00000045721/1-804 HEAVGEIMSL SAATPHYLKA LGLLAPDFHE DNETEINFLL KQALTIVGTL ENSTTRP00000003366/1-804 HEAVGEIMSL SAATPHYLKA LGLLPPDFYE DSATEINFLL KQALTIVGTL bmy_01272T0/1-620 HEAVGEIMSL SAATPHYLKA LGLLPPDFHE DNGTEINFLL KQALNIVGTL BACU005292/1-804 HEAVGEIMSL SAATPHYLKA LGLLPPDFYE DNVTEINFLL KQALQIVGTL 451 500 ENSP00000389326/1-805 PFTYMLEKWR WMVFKGEIPK DQWMKKWWEM KREIVGVVEP VPHDETYCDP ENSBTAP00000045721/1-804 PFTYMLEKWR WMVFKGEIPK QQWMEKWWEM KREIVGVVEP LPHDETYCDP ENSTTRP00000003366/1-804 PFTYMLEKWR WMVFKGEIPK EQWMQKWWEM KREIVGVVEP LPHDETYCDP bmy_01272T0/1-620 PFTYMLEKWR WMVFKGEIPK EQWMQKWWEM KREIVGVVEP LPHDETYCDP BACU005292/1-804 PFTYMLEKWR WMVFKGEIPK EQWMQKWWEM KREIVGVVEP LPHDETYCDP 501 550 ENSP00000389326/1-805 ASLFHVSNDY SFIRYYTRTL YQFQFQEALC QAAKHEGPLH KCDISNSTEA ENSBTAP00000045721/1-804 ACLFHVAEDY SFIRYYTRTI YQFQFHEALC KTAKHEGALF KCDISNSTEA ENSTTRP00000003366/1-804 ACLIHVAEDY SFIRYYTRTI YQFQFHEALC QTAKHEGPLY KCDISNSTEA bmy_01272T0/1-620 ACLFHVAEDY SFIRYYTRTI YQFQFHEALC QTAKHEGPLY KCDISNSTEA BACU005292/1-804 ACLFHVAEDY SFIRYYTRTI YQFQFHEALC QTAKHEGPLY KCDISNSTEA 551 600 ENSP00000389326/1-805 GQKLFNMLRL GKSEPWTLAL ENVVGAKNMN VRPLLNYFEP LFTWLKDQNK ENSBTAP00000045721/1-804 GQRLLQMLRL GKSEPWTLAL ENIVGIKTMD VKPLLNYFEP LFTWLKEQNR ENSTTRP00000003366/1-804 GQRLLQMLHL GKSEPWTSAL ERIVGVKTMD VKPLLNYFEP LLTWLKGQNR bmy_01272T0/1-620 GQRLLQMLRL GKSEPWTLAL ESIVGVKTMD VKPLLNYFEP LLTWLKDQNR BACU005292/1-804 GQRLLQMLHL GKSEPWTLAL ENIVGVKTMD VKPLLNYFEP LLTWLKEQNR 601 650 ENSP00000389326/1-805 NSFVGWSTDW SPYADQSIKV RISLKSALGD KAYEWNDNEM YLFRSSVAYA ENSBTAP00000045721/1-804 NSFVGWSTEW TPYSDQSIKV RISLKSALGE NAYEWNDNEM YLFQSSVAYA ENSTTRP00000003366/1-804 NSFVGWRTDW TPYSNQSIKV RISLKSALGE KAYEWNDNEM YLFRSSVAYA bmy_01272T0/1-620 NSSVGWSTDW TPCG------ ---------- ---------- ---------- BACU005292/1-804 NSPVGWSTDW TPYSDQSIKV RISLKSALGE KAYEWNDNEM YLFQSSVAYA 651 700 ENSP00000389326/1-805 MRQYFLKVKN QMILFGEEDV RVANLKPRIS FNFFVTAPKN VSDIIPRTEV ENSBTAP00000045721/1-804 MRKYFSEARN ETVLFGEDNV WVSDKKPRIS FKFFVTSPNN VSDIIPRTEV ENSTTRP00000003366/1-804 MREYFSKVRN KTIPFGXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01272T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU005292/1-804 MREYFSKVRN ETIPFGEKDV WVSDLKPRIS FNFFVTTPKN VSDIIPRTEV 701 750 ENSP00000389326/1-805 EKAIRMSRSR INDAFRLNDN SLEFLGIQPT LGPPNQPPVS IWLIVFGVVM ENSBTAP00000045721/1-804 ENAIRLSRDR INDVFQLDDN SLEFLGIQPT LGPPYEPPVT IWLIIFGVVM ENSTTRP00000003366/1-804 XXXXXMSRGR INDAFRLDDS SLEFLGVQPT LAPPYEPPVT VWLIIFGVVM bmy_01272T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU005292/1-804 EEAIRMSRGR INDAFRLDDN SLEFLGIQPT LGPPYEPPVT IWLIIFGAVM 751 800 ENSP00000389326/1-805 GVIVVGIVIL IFTGIRDRKK KNKARSGENP YASIDISKGE NNPGFQNTDD ENSBTAP00000045721/1-804 GVVVIGIVVL IFTGIRNRRK KNQASSEENP YGSVDLNKGE NNSGFQNIDD ENSTTRP00000003366/1-804 GVVVIGIVVL IFTGIRDRRM KNQASSEENP YGSVGLSKGE NNPGFQNSDD bmy_01272T0/1-620 ---------- ---------- ---------- YIEL------ ---------- BACU005292/1-804 GVVVIGIAVL IFTGIRDRRE KSQASSEENP YISMDLSKGE NNSGFQNSGD 801 850 ENSP00000389326/1-805 VQTSF ENSBTAP00000045721/1-804 VQTSL ENSTTRP00000003366/1-804 VQTSF bmy_01272T0/1-620 --THF BACU005292/1-804 VHTSF