KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:09 2014 Check: 00 .. Name: ENSP00000258168/1-547 Len: 602 Check: 6020 Weight: 1.00 Name: ENSBTAP00000045735/1-494 Len: 602 Check: 177 Weight: 1.00 Name: bmy_11100T0/1-540 Len: 602 Check: 3595 Weight: 1.00 Name: BACU009725/1-566 Len: 602 Check: 7497 Weight: 1.00 Name: ENSTTRP00000006415/1-544 Len: 602 Check: 3437 Weight: 1.00 // 1 50 ENSP00000258168/1-547 -------MDI IFGRNR---- -KEQLEPVRA KVTG------ ---------- ENSBTAP00000045735/1-494 -------MEI IFGRNK---- -KEQLEPVRA RVTG------ ---------- bmy_11100T0/1-540 AASCRRVHEE IPGPRRAESK WRKEWHQKGR RCKGSCRRAG REDKEGPGAV BACU009725/1-566 -------MDT IFGRNK---- -KEQLEPLRA RVTG------ ---------- ENSTTRP00000006415/1-544 -------MDI IFGRNK---- -KEQLEPLRA RVTG------ ---------- 51 100 ENSP00000258168/1-547 -------KIP AWLQGTLLRN GPGMHTVGES RYNHWFDGLA LLHSFTIRDG ENSBTAP00000045735/1-494 -------KIP AWLQGILLRN GPGMHTVGET RYNHWFDGLA LLHSFTIRDG bmy_11100T0/1-540 ALNTEERRIP AWLQGTLLRN GPGMHTV--- ---------- ---------G BACU009725/1-566 -------RIP AWLQGTLLRN GPGMHTVGET RYNHWFDGLA LLHSFTIGDG ENSTTRP00000006415/1-544 -------RIP AWLQGTLLRN GPGMHTAGET RYNHWFDGLA LLHSFTIRDG 101 150 ENSP00000258168/1-547 EVYYRSKYLR SDTYNTNIEA NRIVVSEFGT MAYPDPCKNI FSKAFSYLSH ENSBTAP00000045735/1-494 EVYYRSKYLR SDTYTANIEA NRIVVSEFGT MAYPDPCKNI FSKAFSYLSH bmy_11100T0/1-540 EVYYRSKYLR SDTYTANIEA NRIVVSEFGT MAYPDPCKNI FSKAFSYLSH BACU009725/1-566 EVYYRSKYLR SDTYNANIEA NRIVVSEFGT MAYPDPCKNI FSKAFSYLSH ENSTTRP00000006415/1-544 EVYYRSKYLR SDTYNANIEA NRIVVSEFGT MAYPDPCKNI FSKAFSYLSH 151 200 ENSP00000258168/1-547 TIPDFTDNCL INIMKCGEDF YATSETNYIR KINPQTLETL EKVDYRKYVA ENSBTAP00000045735/1-494 TIPDFTDNCL INIMRCGEDF YATTETSYIR RINPQTLETL EKVDFRKYVA bmy_11100T0/1-540 TIPDFTDNCL INIMKCGEDF YATTETNYIR KINPQTLETL EKVDYRKHVA BACU009725/1-566 TIPDFTDNCL INIMKCGEDF YATMETNYIR KINPQTLETL EKVDYRKHVA ENSTTRP00000006415/1-544 TIPDFTDNCL INIMKCGEDF YATTETNYIR KINPQTLETL EKVDYRKHVA 201 250 ENSP00000258168/1-547 VNLATSHPHY DEAGNVLNMG TSIVEKGKTK YVIFKIPATV PEGKKQGKSP ENSBTAP00000045735/1-494 VNLATSHPHY DAAGNVLNVG TSIVDKGKTK YVIFKIPAPV PGGRKEGRSP bmy_11100T0/1-540 VNLATSHPHY DDAGNVLNIG TSIVDKGKTK YVIFKIPATV SEGGKKGLSP BACU009725/1-566 VNLATSHPHY DDAGNVLNIG TSIVDKGKTK YVIFKIPATV SEGGKKGLSP ENSTTRP00000006415/1-544 VNLATSHPHY DDAGNVLNIG TSIVDKGKTK YVIFKIPATV SGGRKKGLSP 251 300 ENSP00000258168/1-547 WKHTEVFCSI PSRSLLSPSY YHSFGVTENY VIFLEQPFRL DILKMATAYI ENSBTAP00000045735/1-494 LKDTEVFCSI AAHSLLSPSY YHSFGVSENY IIFLEQPFKL DILKMATAYI bmy_11100T0/1-540 LKHMEVFCSI ASRALLSPSY YHSFGVTESY IVFLEQPFKM DILKMATAYI BACU009725/1-566 LKHMEVFCSI ASRALLSPSY YHSFGVTESY IVFLEQPFRM DILKMATAYI ENSTTRP00000006415/1-544 --HMEV-CSI ASLSLLSPSY YHSFGVTESY IVFLEQPFKM DILKMATAYL 301 350 ENSP00000258168/1-547 RRMSWASCLA FHREEKTYIH IIDQRTRQPV QTKFYTDAMV VFHHVNAYEE ENSBTAP00000045735/1-494 RGVSWASCLA FHGEDKTHIH IIDRRTRKPV PTKYHTDPMV VFHHVNAYEE bmy_11100T0/1-540 RGVSWASCLA FHREDKTYIH IIDQRTRKPV LTKFYTDPMV VFHHVNAYEE BACU009725/1-566 RGVSWASCLA FHREDKTYIH IIDQRTRKPV LTKFYTDPMV VFHHVNAYEE ENSTTRP00000006415/1-544 RGASWASCLA FHREDKTYIH IIDQRTRKPV LTKFYTDPMV VFHHVNAYEE 351 400 ENSP00000258168/1-547 DGCIVFDVIA YEDNSLYQLF YLANLNQDFK ENSRLTSVPT LRRFAVPLHV ENSBTAP00000045735/1-494 DGCLLFDVIT YEDGSLYQLF YLANLNEDFK ENSRLTSMPT LKRFVLPLHV bmy_11100T0/1-540 DGCLLFDVIA YEDSSLYQLF YLANLNKDFE ENSRLTSVPA LKRFAVPLHV BACU009725/1-566 DGCLLFDVIA YEDSSLYQLF YLANLNKDFE ENSRLTSVPA LKRFAVPLRV ENSTTRP00000006415/1-544 DGCLLFDVIA YEDSSLYQLF YLANLNKNFE ENSRLTSVPA LKRFAVPLHM 401 450 ENSP00000258168/1-547 DKNAEVGTNL IKVASTTATA LKEEDGQVYC QPEFLYEGLE LPRVNYAHNG ENSBTAP00000045735/1-494 DKNAEVGSNL IKLSSTTARA LKEKDDQVYC QPELLCEGLE LPHINYAHNG bmy_11100T0/1-540 D--------- ---------- -KEKEDQVYC QPELLYEGLE LPRINYAHNG BACU009725/1-566 DKNAEVGSNL IKLSSTTARA LKEKEDQVYC QPELLYEGLE LPRINYAHNG ENSTTRP00000006415/1-544 DKNAEAGSNL IKLSSTTARA LKEKEDQVYC QPELLYEGLE LPRINYAHNG 451 500 ENSP00000258168/1-547 KQYRYVFATG VQWSPIPTK- ---------- --------II KYDILTK-SS ENSBTAP00000045735/1-494 QPYRYIFAAG VQWSPIPK-- ---------- --------LF YSSIVAQWSS bmy_11100T0/1-540 KRYRYVFAAE VQWSPIPTK- ---------- --------II KYDILTK-SS BACU009725/1-566 KRYRYVFAAE VQWSPIPTKG IRMLSNRSFP CFSPSDAQII KYDILTK-SS ENSTTRP00000006415/1-544 KRYRYVFAAE VQWSPIPTK- ---------- --------II KYDILTK-SS 501 550 ENSP00000258168/1-547 LKWREDDCWP AEPLFVPAPG AKDEDDGVIL SAIVSTDPQK LPFLLILDAK ENSBTAP00000045735/1-494 LTWREEHCWP AEPLFVPTPG AKDEDDGIIL SAIVSTDPQK SPFLLVLDA- bmy_11100T0/1-540 LKWGEAHCWP AEPVFVPTPG AEDEDHGIIL SAIVSTDPQK LPFLLVLDAK BACU009725/1-566 LKWGKAHCWP AEPVFVPTPG AEDEDHGIIL SAIVSTDPQK LPFLLVLDAK ENSTTRP00000006415/1-544 LKWGEVHCWP AEPVFVPTPG AEDEDHGIIL SAIVSTDPQK LPFLLVLDAK 551 600 ENSP00000258168/1-547 SFTELARASV DVDMHMDLHG LFITDMDWDT KKQAASEEQR DRASDCHGAP ENSBTAP00000045735/1-494 ---------- ---------- ---------- ---------- ---------- bmy_11100T0/1-540 TFTELARASV DVDMHLDLHG LFIPGANWDA GKQAPSWEEQ DRAAERRVAP BACU009725/1-566 TFTELARASV DVEMHLDLHG LFIPGANWDA GKQAPSREEQ DRAAERRVAP ENSTTRP00000006415/1-544 TFTELARASV DVEMHLDLHG LFIPGADWDA GKQAPSREER DRAAERRVAP 601 650 ENSP00000258168/1-547 LT ENSBTAP00000045735/1-494 -- bmy_11100T0/1-540 RT BACU009725/1-566 RT ENSTTRP00000006415/1-544 RT