KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:10 2014 Check: 00 .. Name: ENSBTAP00000045752/1-379 Len: 684 Check: 9170 Weight: 1.00 Name: ENSTTRP00000011255/1-467 Len: 684 Check: 7889 Weight: 1.00 Name: ENSP00000369579/1-522 Len: 684 Check: 7972 Weight: 1.00 Name: bmy_15377T0/1-517 Len: 684 Check: 5214 Weight: 1.00 Name: BACU001059/1-477 Len: 684 Check: 8228 Weight: 1.00 // 1 50 ENSBTAP00000045752/1-379 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011255/1-467 ---------- ---------- ---MEEELAW ETQCL----- ---------- ENSP00000369579/1-522 ---------- ---------- ---MQEELAW ETDGL----- ---------- bmy_15377T0/1-517 ---------- ---------- ---MEEELAW ETQGL----- ---------- BACU001059/1-477 MSCVGRRSSL SGEVSNIKRE ERHPPTTLSW KTPCLGDIWA REGLFPDPPY 51 100 ENSBTAP00000045752/1-379 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011255/1-467 ---------- --------LP LERQLHEAAH RNHVGRMKEP IGRRVHNIRA ENSP00000369579/1-522 ---------- --------LP LERQLHEAAR QNNVGRMQEL IGRRVN-TRA bmy_15377T0/1-517 --SGVLRPHP APHFVPTVLP LERQLHEAAR RNHVGRMKEL IGRRVH-IRA BACU001059/1-477 RVSGVLRPHP APLFVPTVLP LERQLHEAAR RNHAGRMKEL IGRRVH-IRA 101 150 ENSBTAP00000045752/1-379 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011255/1-467 RNHVGRLALH RAAGAGHEQA VRLLLVCXXX XXXXXXXXXX XXXXXXXXXX ENSP00000369579/1-522 RNHVGRVALH WAAGAGHEQA VRLLLEHEAA VDEEDAVGAL TEARLC---- bmy_15377T0/1-517 RNHVGRVALQ RAAGAGHEQA VRLLLEHEAA VDDEDAVRVP SRRHVCVCMS BACU001059/1-477 RNHVGRAAQH RAAGAGHEQA VRLLLEHEAA VDDEDA---- ---------- 151 200 ENSBTAP00000045752/1-379 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011255/1-467 XXXXXXXXXX ---------- ---------- ---------- ---------- ENSP00000369579/1-522 ---------- ---------- ---------- ---------- ------FGMN bmy_15377T0/1-517 VFLSVLWWGR GIRAHSGSMS QLSVPRSSLI HRRAVSSLPP PCPLPEFGMN BACU001059/1-477 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000045752/1-379 ---------- ---------- ---------- ---------- ---------G ENSTTRP00000011255/1-467 ---------- ---------- ---------- ---------- --------DS ENSP00000369579/1-522 ALLLSAWFGH LRILQILVNS GAKIHCESK- ---------- --------DG bmy_15377T0/1-517 ALLLSAWFSH LRILQILVNS GAKIHCKNKR VSRASLCRLQ GQPWACFQDD BACU001059/1-477 ---------- ---------- ---------- ---------- --------DG 251 300 ENSBTAP00000045752/1-379 LTLLQFEAAK GHVLALPFIM EDPESWHLTV RQARKSCVSL GCNAEHRQLD ENSTTRP00000011255/1-467 LTLLHCAAQK GHVPVLAFIT EDLEDVALD- HADKXXXXXX XXXXXXXXXX ENSP00000369579/1-522 LTLLHCAAQK GHVPVLAFIM EDLEDVALD- HVDKLGRTAF HRAAEHGQLD bmy_15377T0/1-517 LTLLHCAAQK GHVPVLAFIT EDLEDVALD- HA-------- ---------- BACU001059/1-477 LTLLHCAAQK GHVPVLAFIT EDLEDVALD- HADKLGRTAF HRAAEHGQLG 301 350 ENSBTAP00000045752/1-379 ALDLSVGSGC GHSVKDKEGN TALHLAA--- HLAVLQ---- --LDLKEQNA ENSTTRP00000011255/1-467 XXXXXXXXXX XXXXXXXEGN TALHPAARWG HLAVLQRLMD VRLDLEERNA ENSP00000369579/1-522 ALDFLVGSGC DHNVKDKEGN TALHLAAGRG HMAVLQRLVD IGLDLEEQNA bmy_15377T0/1-517 ---------- -----DKEGN TALHPAARWG HLAVLQQLLD VRLDLEERNA BACU001059/1-477 SLDFLVGSGC DHNVKDKEGN TALHPAARWG HLAVLQRLLD VRLDMEERNA 351 400 ENSBTAP00000045752/1-379 EGLTALNPAA EGIHLPCVQL PLGAGTRLNI ISEKKQSCLH YAALGGSKDM ENSTTRP00000011255/1-467 EGLTALHAAA EGIHPDCVQL LLGAGSSANA LTQXXXXXXX XXXXXXXXXX ENSP00000369579/1-522 EGLTALHSAA GGSHPDCVQL LLRAGSTVNA LTQKNLSCLH YAALSGSEDV bmy_15377T0/1-517 EGLTALHAAA EGIHPDCVQL LLRAGSSARA LSQATHVTRE VRRSKLRSTI BACU001059/1-477 EGLTALHAAA EGIHPRCVQL LLRAGSSASA LSQKKQSCFH YAALGGSEDM 401 450 ENSBTAP00000045752/1-379 ----VIQAGG SSNVADP--- -----QGATP VHLAEARHWP AAGPY--GRH ENSTTRP00000011255/1-467 -XXXXXXXXX XXXXXX---- -----XQASP VHITVRHNFP VLVQLLIDTG ENSP00000369579/1-522 -SRVLIHAGG CANVVDH--- -----QGASP LHLAVRHNFP ALVRLLINSD bmy_15377T0/1-517 YTVSPLHMNQ FRSESTF--- -----HGTSP VHISVRHNFP VLVQLFIDTG BACU001059/1-477 -TWALVHAGG STDMADHIRV GPGWKQGASP AHITVRYNFP VLVQLLIDTG 451 500 ENSBTAP00000045752/1-379 FDLDTVDN-- ---------- ------RKQT PLQL----AW WDIAEMLLIT ENSTTRP00000011255/1-467 SDLDAVDN-- ---------- --------RQ TPHLATEHAW QDIVGILLIA ENSP00000369579/1-522 SDVNAVDN-- ---------- ------RQQT PLHLAAEHAW QDIADMLLIA bmy_15377T0/1-517 SDLDAVDNVS GCRNHLGPTE PLGTLPEAAD TPHLAAEHAW QDIADILLIA BACU001059/1-477 SDLDAVDN-- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000045752/1-379 GVNLNLRDKG NKEKLPSVAA RSNHSSLVDR IIKADHFYRW EKV-----QL ENSTTRP00000011255/1-467 GVNLNLRDKQ GKTTLP-VAT HINHVSLVEM IIKADCFYRW EKDQLSCKDL ENSP00000369579/1-522 GVDLNLRDKQ GKTALA-VAV RSNHVSLVDM IIKADRFYRW EKD-----HP bmy_15377T0/1-517 GVNLNLRDKQ GKTALP-VAA HINHVSLVDM IIKAYSFYRW EKE------- BACU001059/1-477 ---------Q GKTALP-VAA HINHVSLVDM IIKADRFYRW EKDQLSCRDL 551 600 ENSBTAP00000045752/1-379 SEPRGQSLLR KQGHQREMQP LCSVLWQLAS QYLWPHKWKK LACCWEFTKA ENSTTRP00000011255/1-467 CEPSGKSLTF KQDHRQETHQ LRSVLW-LAS RYLQPHEWKK LAYCWEFSEA ENSP00000369579/1-522 SDPSGKSLSF KQDHRQETQQ LRSVLWRLAS RYLQPREWKK LAYSWEFTEA bmy_15377T0/1-517 ---------- ---------- ---------- -------WKK LAYCWEFTEA BACU001059/1-477 CDPSGKSLTF KQDHRQETQQ LRSVLW---- -YLRPHKWKK LAYCWEFTEA 601 650 ENSBTAP00000045752/1-379 HIHAIEQQWT GTRSYGEHEH RMLLIWPHG- ---GENPTRA LFKGLVAIGR ENSTTRP00000011255/1-467 HVHAIEQQWT GTESYREHGH ---------- VTASENPSRV LFKGLVAIGR ENSP00000369579/1-522 HVDAIEQQWT GTRSYQEHGH RMLLIWLHGV ATAGENPSKA LFEGLVAIGR bmy_15377T0/1-517 HVHAIEQQWT GTKSYREHGH -----WSQPV RTPAERYSKA ---------S BACU001059/1-477 HVHAIEQQWT GTKSYRQHGH -----WSQPV RMPAERYSKA ---------S 651 700 ENSBTAP00000045752/1-379 RDLAGNPKV- -TEATISSYP AVYTALIPCP TPPP ENSTTRP00000011255/1-467 RDLA------ ---------- ---------- ---- ENSP00000369579/1-522 RDLAG--WST MARSQLTATS ASRVQMILVP QPPE bmy_15377T0/1-517 SPLAGGTWL- ---------- ---------- ---- BACU001059/1-477 SPLAGGTWLD LQD------- ---------- ----