KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:11 2014 Check: 00 .. Name: ENSP00000265175/1-1268 Len: 1271 Check: 2322 Weight: 1.00 Name: ENSBTAP00000045766/1-1247 Len: 1271 Check: 4936 Weight: 1.00 Name: ENSTTRP00000015459/1-1253 Len: 1271 Check: 9264 Weight: 1.00 Name: bmy_07166T0/1-821 Len: 1271 Check: 2172 Weight: 1.00 Name: BACU014403/1-1151 Len: 1271 Check: 2306 Weight: 1.00 // 1 50 ENSP00000265175/1-1268 MSAPAGSSHP AASARIPPKF GGAAVSGAAA PAGPGAGPAP HQQNGPAQNQ ENSBTAP00000045766/1-1247 MSAPAGSPHP AASARIPPKL GGAAASGAAA PAGP--GPGP HQQNGPAQNQ ENSTTRP00000015459/1-1253 MSAPAGSPHP AASSRIPPKL GGAAASGAAA PAGP--GPGP HQQNGPAQNQ bmy_07166T0/1-821 ---------- ---------- ---------- ---------- ---------- BACU014403/1-1151 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000265175/1-1268 MQVPSGYGLH HQNYIAPSGH YSQGPGKMTS LPLDTQCGDY YSALYTVPTQ ENSBTAP00000045766/1-1247 MQVPSEYGLP PQNYIVPSGH YSQGPGKMTS LPLQSQSGDY YSGLYTVPTQ ENSTTRP00000015459/1-1253 MQVPSGYGLH PQSYTAPSGH YSQGPGKMTS LPLDSQCDDY YSGLYRVPTQ bmy_07166T0/1-821 ---------- ---------- ---------- ---------- ---------- BACU014403/1-1151 MQVPSGYGLH PQSYIAPSGH YSQGPGKMTS LPLDSQCDDY YSGLYRVPTQ 101 150 ENSP00000265175/1-1268 NV-TPNTVNQ QPGAQQLYSR GPPAPHIVGS TLGSFQGAAS SASHLHTSAS ENSBTAP00000045766/1-1247 NVATPNTASQ QAGAQQMYGR APPAPHAVGS TPGSFQGASS SASHLHTSAS ENSTTRP00000015459/1-1253 NVVTPNAASP QPGAQQMYGS VPPAPHVVGS TLGSFQGAGS SASHLHTSAS bmy_07166T0/1-821 ---------- ---------- ---------- ---------- ---------- BACU014403/1-1151 NVVTPNTASQ QPGAQQMYGS VPPAPHVVGS TLGSFQGAGS SASHLHTSAS 151 200 ENSP00000265175/1-1268 QPYSSFVNHY NSPAMYSASS SVASQGFPST CGHYAMSTVS NAAYPSVSYP ENSBTAP00000045766/1-1247 QPYSSFVNHY NSPATYSASS SVASQGFPST CGHYALSTVS NAAYPSISYP ENSTTRP00000015459/1-1253 QPYSSFVNHY NSPAMYSDNS SVAAQGFPST CGHYALSTVS NAAYPSVSYP bmy_07166T0/1-821 ---------- ---------- ---------- ---------- ---------- BACU014403/1-1151 QPYSSFVNRY NSPAMYSANS SVAAQGFPST CGHYALSTVS NAAYPSVSYP 201 250 ENSP00000265175/1-1268 SLPAGDTYG- QMFTSQNAPT VRPVKDNSFS GQNTAISHPS PLPPLPSQQH ENSBTAP00000045766/1-1247 SLPAGDPYGQ QMFTSQNAPA VRPIRDNSFS GQNTAVSHPS PLPPPPSRQY ENSTTRP00000015459/1-1253 SLPAGDPYGQ QMFTSQNAPT VRPIRDNSFS GQNTAISHPS PLPPPPSQQY bmy_07166T0/1-821 ---------- ---------- ---------- ---------- ---------- BACU014403/1-1151 SLPAGDPYGQ QMFTSQNAPT VRPVRDNSFS GPSTAISHPS PLPPPPSQQY 251 300 ENSP00000265175/1-1268 HQQQSLSGYS TLTWSSPGLP STQDNLIRNH TGSLAVANNN PTITVADSLS ENSBTAP00000045766/1-1247 HQQQSLSGYS TFSWSAPGLP STQDNLIRNH T-SLATA-SN PTNT------ ENSTTRP00000015459/1-1253 HQQQSLSGYN TFAWSASGLP STQDNLIQNH T-SLATA-NN PTNPVADTLS bmy_07166T0/1-821 ---------- ---------- ---------- ---------- ---------- BACU014403/1-1151 HQQQSLSGYS TFAWSASGLP STQDNLIQNH T-SLATA-NN PTNP------ 301 350 ENSP00000265175/1-1268 CPVMQNVQPP KSSPVVSTVL SGSSGSSSTR TPPTANHPVE PVTSVTQPSE ENSBTAP00000045766/1-1247 --VMQNVQPP KSSPVVSTVV ---SGASSTR MPPAANRPVE PVASVTQPSE ENSTTRP00000015459/1-1253 CSVMQNVQPP KSSPVVSAVL ---SGASSTR TPPAASRPVE PLASVARPSE bmy_07166T0/1-821 ---------- ---------- ---------- ---------- ---------- BACU014403/1-1151 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000265175/1-1268 LLQQKGVQYG EYVNNQASSA PTPLSSTSDD EEEEEEDEEA GVDSSSTTSS ENSBTAP00000045766/1-1247 LLQQKGMQYG EYVNNQASSA PTPLSSTSDD EEEEEEDEEA GVDSSSTTSS ENSTTRP00000015459/1-1253 LLQQKGMQYG EYVNNQASSA PTPLSSTSDD EEEEEEDEEA GVDSSSTTSS bmy_07166T0/1-821 ---------- ---------- ---------- ---------- ---------- BACU014403/1-1151 -----GMQYG EYVNNQASSA PTPLSSTSDD EEEEEEDEEA GVDSSSTTSS 401 450 ENSP00000265175/1-1268 ASPMPNSYDA LEGGSYPDML SSSASSPAPD PAPEPDPASA PAPASAPAPV ENSBTAP00000045766/1-1247 ASPMPNSYDA LEGGSYPDVL SSSASSPAPD PAP--DPAPA PAPAA----- ENSTTRP00000015459/1-1253 ASPMPNSYDA LEGGSYPDML SSSASSPAPD PAP----APA PAPAA----- bmy_07166T0/1-821 ---MPNSYDA LEGGSYPDML SSSASSPAPD PAPEPDAAPA PAPAT----- BACU014403/1-1151 ASPMPNSYDA LEGGSYPDML SSSASSPAPD PAPEPDPAPA PAPAA----- 451 500 ENSP00000265175/1-1268 VPQPSKMAKP FGYGYPTLQP GYQNATAPLI SGVQPSNPVY SGFQQYPQQY ENSBTAP00000045766/1-1247 -PQPSKMPKP FGYGYPTLQP GYQNATAPLN SGGPPSSPVY SGFQQYA-QY ENSTTRP00000015459/1-1253 -PQPSKVAKP FGYGYPALQP GYQNAAAPLN SGVPPGSPAY SGFQQYAQQY bmy_07166T0/1-821 -PQPSNMAKP FGYGYPTLQP GYQNATAPLN SGVPPSSPMY SGFQQYAQQY BACU014403/1-1151 -PQPSKMAKP FGYGYPTLQP GYQNATAPLN SGVPPSSPMY SGFQQYAQQY 501 550 ENSP00000265175/1-1268 PGVNQLSSSI GGLSLQSSPQ PESLRPVNLT QERNILPMTP VWAPVPNLNA ENSBTAP00000045766/1-1247 PGMNQLSSSL GGLNLQSSSQ PESLRPVNLT QERNILPMTP VWAPVPNLNL ENSTTRP00000015459/1-1253 PGMNQLSSSL GGLSLQSSSQ PESLRPVNLT QERNILPMTP VWAPVPNLNL bmy_07166T0/1-821 PGMNQLSSSL GGLNLQSSSQ PESLRPVNLT QERNILPMTP VWAPVPNLNL BACU014403/1-1151 PGMNQLSSSL GGLNLQSSSQ PESLRPVNLT QERNILPMTP VWAPVPNLNL 551 600 ENSP00000265175/1-1268 DLKKLNCSPD SFRCTLTNIP QTQALLNKAK LPLGLLLHPF RDLTQLPVIT ENSBTAP00000045766/1-1247 DLKKLNCSPD SFRCTLTNIP QTQALLNKAK LPLGLLLHPF RDLTQLPVIT ENSTTRP00000015459/1-1253 DLKKLNCSPD SFRCTLTNIP QTQALLNKAK LPLGLLLHPF RDLTQLPVIT bmy_07166T0/1-821 DLKKLNCSPD SFRCTLTNIP QTQALLNKAK LPLGLLLHPF RDLTQLPVIT BACU014403/1-1151 DLKKLNCSPD SFRCTLTNIP QTQALLNKAK LPLGLLLHPF RDLTQLPVIT 601 650 ENSP00000265175/1-1268 SNTIVRCRSC RTYINPFVSF IDQRRWKCNL CYRVNDVPEE FMYNPLTRSY ENSBTAP00000045766/1-1247 SNTIVRCRSC RTYINPFVSF IDQRRWKCNL CYRVNDVPEE FMYNPLTRSY ENSTTRP00000015459/1-1253 SNTIVRCRSC RTYINPFVSF IDQRRWKCNL CYRVNDVPEE FMYNPLTRSY bmy_07166T0/1-821 SNTIVRCRSC RTYINPFVSF IDQRRWKCNL CYRVNDVPEE FMYNPLTRSY BACU014403/1-1151 SNTIVRCRSC RTYINPFVSF IDQRRWKCNL CYRVNDVPEE FMYNPLTRSY 651 700 ENSP00000265175/1-1268 GEPHKRPEVQ NSTVEFIASS DYMLRPPQPA VYLFVLDVSH NAVEAGYLTI ENSBTAP00000045766/1-1247 GEPHKRPEVQ NSTVEFIASS DYMLRPPQPA VYLFVLDVSH NAVEAGYLTI ENSTTRP00000015459/1-1253 GEPHKRPEVQ NSTVEFIASS DYMLRPPQPA VYLFVLDVSH NAVEAGYLTI bmy_07166T0/1-821 GEPHKRPEVQ NSTVEFIASS DYMLRPPQPA VYLFVLDVSH NAVEAGYLTI BACU014403/1-1151 GEPHKRPEVQ NPTVEFIASS DYMLRPPQPA VYLFVLDVSH NAVEAGYLTI 701 750 ENSP00000265175/1-1268 LCQSLLENLD KLPGDSRTRI GFMTFDSTIH FYNLQEGLSQ PQMLIVSDID ENSBTAP00000045766/1-1247 LCQSLLENLD KLPGDSRTRI GFVTFDSTIH FYNLQEGLSQ PQMLIVSDID ENSTTRP00000015459/1-1253 LCQSLLENLD KLPGDSRTRI GFMTFDSTIH FYNLQEGLSQ PQMLIVSDID bmy_07166T0/1-821 LCQSLLENLD KLPGDSRTRI GFMTFDSTIH FYNLQEGLSQ PQMLIVSDID BACU014403/1-1151 LCQSLLENLD KLPGDSRTRI GFMTFDSTIH FYNLQEGLSQ PQMLIVSDID 751 800 ENSP00000265175/1-1268 DVFLPTPDSL LVNLYESKEL IKDLLNALPN MFTNTRETHS ALGPALQAAF ENSBTAP00000045766/1-1247 DVFLPTPDSL LVNLYESKEL IKDLLNALPN MFTNTRETHS ALGPALQAAF ENSTTRP00000015459/1-1253 DVFLPTPDSL LVNLYESKEL IKDLLNALPN MFTNTRETHS ALGPALQAAF bmy_07166T0/1-821 DVFLPTPDSL LVNLYESKEL IKDLLNALPN MFTNTRETHS ALGPALQAAF BACU014403/1-1151 DVFLPTPDSL LVNLYESKEL IKDLLNALPN MFTNTRETHS ALGPALQAAF 801 850 ENSP00000265175/1-1268 KLMSPTGGRV SVFQTQLPSL GAGLLQSRED PNQRSSTKVV QHLGPATDFY ENSBTAP00000045766/1-1247 KLMSPTGGRV SLFQTQLPSL GAGLLQSRED PNQRSSTKVV QHLGPATDFY ENSTTRP00000015459/1-1253 KLMSPTGGRV SVFQTQLPSL GAGLLQSRED PNQRSSTKVV QHLGPATDFY bmy_07166T0/1-821 KLMSPTGGRV SVFQTQLPSL GAGLLQSRED PNQRSSTKVV QHLGPATDFY BACU014403/1-1151 KLMSPTGGRV SVFQTQLPSL GAGLLQSRED PNQRSSTKVV QHLGPATDFY 851 900 ENSP00000265175/1-1268 KKLALDCSGQ QTAVDLFLLS SQYSDLASLA CMSKYSAGCI YYYPSFHYTH ENSBTAP00000045766/1-1247 KKLALDCSGQ QTAVDLFLLS SQYSDLASLA CMSKYSAGCI YYYPSFHYTH ENSTTRP00000015459/1-1253 KKLALDCSGQ QTAVDLFLLS SQYSDLASLA CMSKYSAGCI YYYPSFHYTH bmy_07166T0/1-821 KKLALDCSGQ QTAVDLFLLS SQYSDLASLA CMSRYSAGCI YYYPSFHYXH BACU014403/1-1151 KKLALDCSGQ QTAVDLFLLS SQYSDLASLA CMSKYSAGCI YYYPSFHYTH 901 950 ENSP00000265175/1-1268 NPSQAEKLQK DLKRYLTRKI GFEAVMRIRC TKGLSMHTFH GNFFVRSTDL ENSBTAP00000045766/1-1247 NPSQAEKLQK DLKRYLTRKI GFEAVMRIRC TKGLSMHTFH GNFFVRSTDL ENSTTRP00000015459/1-1253 NPSQAEKLQK DLKRYLTRKI GFEAVMRIRC TKGLSMHTFH GNFFVRSTDL bmy_07166T0/1-821 NPSQAEKLQK DLKRYLTRKI GFEAVMRIRC TKGLSMHTFH GNFFVRSTDL BACU014403/1-1151 NPSQAEKLQK DLKRYLTRKI GFEAVMRIRC TKGLSMHTFH GNFFVRSTDL 951 1000 ENSP00000265175/1-1268 LSLANINPDA GFAVQLSIEE SLTDTSLVCF QTALLYTSSK GERRIRVHTL ENSBTAP00000045766/1-1247 LSLANINPDA GFAVQLSIEE SLTDTSLVCF QTALLYTSSK GERRIRVHTL ENSTTRP00000015459/1-1253 LSLANINPDA GFAVQLSIEE SLTDTSLVCF QTALLYTSSK GERRIRVHTL bmy_07166T0/1-821 LSLANINPDA GFAVQLSIEE SLTDTSLVCF QTALLYTSSK GERRIRVHTL BACU014403/1-1151 LSLANINPDA GFAVQLSIEE SLTDTSLVCF QTALLYTSSK GERRIRVHTL 1001 1050 ENSP00000265175/1-1268 CLPVVSSLAD VYAGVDVQAA ICLLANMAVD RSVSSSLSDA RDALVNAVVD ENSBTAP00000045766/1-1247 CLPVVSSLAD VYAGVDVQAA ICLLANMAVD RSISSSLSDA RDALVNAVVD ENSTTRP00000015459/1-1253 CLPVVSSLAD VYAGADVQAS ICLLANMAVD RSISSSLSDA RDALVNAVVD bmy_07166T0/1-821 CLPVVSSLAD VYAGADVQAS ICLLANMAVD RSISSSLSDA RDALVNAVVD BACU014403/1-1151 CLPVVSSLAD VYAGADVQAS ICLLANMAVD RSISSSLSDA RDALVNAVVD 1051 1100 ENSP00000265175/1-1268 SLSAYGSTVS NLQHSALMAP SSLKLFPLYV LALLKQKAFR TGTSTRLDDR ENSBTAP00000045766/1-1247 SLSAYGSTVS NVQHSGLIAP SSLKLFPLYV LALLKQKAFR TGTSTRLDDR ENSTTRP00000015459/1-1253 SLSAYGSTVS NLQHSGLIAP SSLKLFPLYV LALLKQKAFR TGTSTRLDDR bmy_07166T0/1-821 SLSAYGSTVS NLQHSGLIAP SSLKLFPLYV LALLKQKAFR TGTSTRLDDR BACU014403/1-1151 SLSAYGSTVS NLQHSGLIAP SSLKLFPLYI LALLKQKAFR TGTSTRLDDR 1101 1150 ENSP00000265175/1-1268 VYAMCQIKSQ PLVHLMKMIH PNLYRIDRLT DEGAVHVNDR IVPQPPLQKL ENSBTAP00000045766/1-1247 VYAMCQIKCQ PLVHLMKMIH PNLYRIDRLT DEGAIHVNDR VVPQPPLQKL ENSTTRP00000015459/1-1253 VYAMCQIKCQ PLVHLMKMIH PNLYRIDRLT DEGAIHVNDR VVPQPPLQKL bmy_07166T0/1-821 VYAMCQIKCQ PLVHLMKMIH PNLYRVDRLT DEGAIHVNDR V--------- BACU014403/1-1151 VYAMCQIKCQ PLVHLMKMIH PNLYRVDRLT DEGAIHVNDR VVPQPPLQKL 1151 1200 ENSP00000265175/1-1268 SAEKLTREG- AFLMDCGSVF YIWVGKGCDN NFIEDVLGYT NFASIPQKMT ENSBTAP00000045766/1-1247 SAEKLTREGP AFMLDDFEVF YIWIGKSCDN NFIEDVLGYP DFASIPQKMT ENSTTRP00000015459/1-1253 SAEKLTRDG- AFLMDCGSVF YIWVGKSCDS NFIEDVLGYP NFASIPQKMT bmy_07166T0/1-821 ---------- --------VF YIWIGKSCDN NFIED----- ---------T BACU014403/1-1151 SAEKLTRDG- AFLMDCGSVF YIWIGKSCDN NFIEDVLGYP NFASIPQKMT 1201 1250 ENSP00000265175/1-1268 HLPELDTLSS ERARSFITWL RDSRPLSPIL HIVKDESPAK AEFFQHLIED ENSBTAP00000045766/1-1247 HLPELDTLSS ERARSFITWL RDSRPLSPVL HVVKDESPAK TEFFQHLIED ENSTTRP00000015459/1-1253 HLPELDTLSS ERARSFITWL RDNRPLNPIL HVVKDESPAK TEFFQHLIED bmy_07166T0/1-821 HLPELDTLSS ERARSFITWL RDNRPLNPIL HVVKDESPAK TEFFQHLIED BACU014403/1-1151 HLPELDTLSS ERARSFITWL RDNRPLNPIL HVVKDESPAK TEFFQHLIED 1251 1300 ENSP00000265175/1-1268 RTEAAFSYYE FLLHVQQQIC K ENSBTAP00000045766/1-1247 RTEAAFSYYE FLLHVQQQIC K ENSTTRP00000015459/1-1253 RTEAAFSYYE FLLHVQQQIC K bmy_07166T0/1-821 RTEAAFSYYE FLLHVQQQIC K BACU014403/1-1151 RTEAAFSYYE FLLHVQQQIC K