KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:57:13 2014  Check: 00 ..

 Name: ENSBTAP00000045818/1-268  Len:    307  Check:  2427  Weight:  1.00
 Name: ENSP00000428338/1-263     Len:    307  Check:  8153  Weight:  1.00
 Name: bmy_11481T0/1-299         Len:    307  Check:  7946  Weight:  1.00
 Name: ENSTTRP00000004472/1-264  Len:    307  Check:  409  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000045818/1-268  ---------- ---------- ---------- -----MGQTA LAG-GSSDPS 
ENSP00000428338/1-263     ---------- ---------- ---------- -----MGQTA LAG-GSSSTP 
bmy_11481T0/1-299         MLYLIDGVDP DRELNFQKRD APASLFRGVL QLLTSMGQTA SAGGGSSSTH 
ENSTTRP00000004472/1-264  ---------- ---------- ---------- -----MGQTA SAGGGGSNTH 


                          51                                                 100
ENSBTAP00000045818/1-268  TPQALYPDRS RPEGLEELLS APPPDLGAQR RHGWNPKDCS ENIEVKEGGL 
ENSP00000428338/1-263     TPQALYPDLS CPEGLEELLS APPPDLGAQR RHGWNPKDCS ENIEVKEGGL 
bmy_11481T0/1-299         TPQALYPDLS CPEGLEELLS APPPDLGAQR RHGWNPKDCS ENIEVKEGGL 
ENSTTRP00000004472/1-264  TPQALYPDLS CPEGLEELLS APPPDLGAQR RHGWNPKDCS ENIEVTEGGL 


                          101                                                150
ENSBTAP00000045818/1-268  CFERRPVAQS TDGARGKRGY SRGLHAWEIS WPREQRGTHA VVGVATARAP 
ENSP00000428338/1-263     YFERRPVAQS TDGARGKRGY SRGLHAWEIS WPLEQRGTHA VVGVATALAP 
bmy_11481T0/1-299         CFERRPVAQS TDGARGKRGY SRGLHAWEIS WPREQRGTHA VVGVATALAP 
ENSTTRP00000004472/1-264  CFERRPVAQS TDGARGKRGY SRGLHAWEIS WPREQRGTHA VVGVATALAP 


                          151                                                200
ENSBTAP00000045818/1-268  LQADHYAALL GSNSESWGWD IGRGKLYHQS KGPGAPQYPP GPQGEPLEVP 
ENSP00000428338/1-263     LQTDHYAALL GSNSESWGWD IGRGKLYHQS KGPGAPQYPA GTQGEQLEVP 
bmy_11481T0/1-299         LQADHYAALL GSNSESWGWD LGRGKLYHQS KGPEAPRYPA GPQGEQLEVP 
ENSTTRP00000004472/1-264  LQADHYAALL GSNSESWGWD LGRGKLYHQS KGPEAPRYPA GRQGEQLEVP 


                          201                                                250
ENSBTAP00000045818/1-268  ERLLVVLDME EGTLGYAVGG TYLGPAFRGL KGRTLYPAVS AVWGQCQVRI 
ENSP00000428338/1-263     ERLLVVLDME EGTLGYAIGG TYLGPAFRGL KGRTLYPAVS AVWGQCQVRI 
bmy_11481T0/1-299         ERLLVVLDME EGTLGYAIGG TYLGPAFRGL KGRTLYPAVS AVWGQCQVRI 
ENSTTRP00000004472/1-264  ERLLVVLDME EGTLGYAIGG TYLGPAFRGL KGRTLYPAVS AVWGQCQVRI 


                          251                                                300
ENSBTAP00000045818/1-268  NYLGERRGEA WDGCGASVRS LVAVVWDGCS APYNHRGNGP SSDWSATQFS 
ENSP00000428338/1-263     RYLGERRAEP --------HS LLHLSRLCVR HNLGDTRLGQ VSALPLPPAM 
bmy_11481T0/1-299         SYLGERRAEP --------HS LLHLSRLCVR RALGDTRLGH VSALPLPPAM 
ENSTTRP00000004472/1-264  SYLGERRAEP --------HS LLHLSRLCVR HALGDTRLGH VSALPLPPAM 


                          301                                                350
ENSBTAP00000045818/1-268  ARIG--- 
ENSP00000428338/1-263     KRYLLYQ 
bmy_11481T0/1-299         KRYLLYR 
ENSTTRP00000004472/1-264  KRYLLYR