KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:57:14 2014 Check: 00 .. Name: BACU003135/1-189 Len: 308 Check: 6234 Weight: 1.00 Name: bmy_05145T0/1-285 Len: 308 Check: 8162 Weight: 1.00 Name: ENSBTAP00000045829/1-210 Len: 308 Check: 9693 Weight: 1.00 Name: ENSP00000363135/1-298 Len: 308 Check: 3655 Weight: 1.00 Name: ENSTTRP00000007388/1-206 Len: 308 Check: 2031 Weight: 1.00 // 1 50 BACU003135/1-189 ---------- ---------- ---------- ---------- -------LPM bmy_05145T0/1-285 MEGVDVNLDP ELMQKFSCLG TTDKDVLISE CQQLLGFQLN PAVCALFLDM ENSBTAP00000045829/1-210 MEGMDVDLDP ELMQKFSCLG TTDKDVLISE FQRLLGFQLN PAGCAFFLDM ENSP00000363135/1-298 MEGMDVDLDP ELMQKFSCLG TTDKDVLISE FQRLLGFQLN PAGCAFFLDM ENSTTRP00000007388/1-206 ---------- ---------- ---------- ----LGFQLN PAGCAFFLDM 51 100 BACU003135/1-189 TSWNLQAAIG DCYDFERPNI SVPSMSFVED VTIGEGEPIP PDTQFMKTWR bmy_05145T0/1-285 TNWNLQAAIG AYYDFESPNI SVPSMSFVED VTIGEGESIP PDTQFIKTWR ENSBTAP00000045829/1-210 TNWNLQAAIG AYYDFESPNI SVPSMSFVED VTIGEGESIP PDTQFIKTWR ENSP00000363135/1-298 TNWNLQAAIG AYYDFESPNI SVPSMSFVED VTIGEGESIP PDTQFVKTWR ENSTTRP00000007388/1-206 TNWNLQAAIG AYYDFESPNI SVPSMSFVED VTIGEGESIP PDTQFIKTWR 101 150 BACU003135/1-189 MQNSGAEAWP PGVCLKYVRG DQFGLVHVVM VRPLEPQEIA DVSVQVCSPG bmy_05145T0/1-285 IQNSGADAWP PGVCLKYVMG DQFGHVNMVM VRSLEPQETA DVSVQMCSPS ENSBTAP00000045829/1-210 IQNSGAEAWP PGVCLKYVGG DQFGHVNMVM VRSLEPQEIA DVSVQMCSPS ENSP00000363135/1-298 IQNSGAEAWP PGVCLKYVGG DQFGHVNMVM VRSLEPQEIA DVSVQMCSPS ENSTTRP00000007388/1-206 IQNSGAEAWP PGVCLKYVGG DQFGHVNMVM VRSLEPQEIA DVSVQMCSPS 151 200 BACU003135/1-189 RAGGMYQDSG YCPLRISCPR ICAATGLYHG DVVGVLLGVE VGGLLGVTQQ bmy_05145T0/1-285 RA-GMYQGQ- --------WQ MCTATGLYYG DVIWVILSVE VGGLLGVTQQ ENSBTAP00000045829/1-210 RA-GMYQGQ- --------WR MCTATGLYYG DVIWVILSVE VGGLLGVTQQ ENSP00000363135/1-298 RA-GMYQGQ- --------WR MCTATGLYYG DVIWVILSVE VGGLLGVTQQ ENSTTRP00000007388/1-206 RA-GMYQGQ- --------WR MCTATGLYYG DVIWVILSVE VGGLLGVTQQ 201 250 BACU003135/1-189 LSSFETEWDT QPHRKAEGNF NPFASPQKNR QSGETI---- ---------- bmy_05145T0/1-285 LSSFETEFNT QPHRKVEGNF NPFASPQKNQ RSDENNLKDP GGSRFDSISK ENSBTAP00000045829/1-210 LSSFETEFNT QPHRKES--- -----PVP-- ---------- ---------- ENSP00000363135/1-298 LSSFETEFNT QPHRKVEGNF NPFASPQKNR QSDENNLKDP GGSEFDSISK ENSTTRP00000007388/1-206 LSSFETEFNT QPHRKVEGNF NPFASPQKNR QSDENNLKDP GGSEFDSISK 251 300 BACU003135/1-189 ---------- ---------- ---------- ---------- ---------- bmy_05145T0/1-285 N-------TW SPTPDQTEQD ENRLLQKSVN LSPSSHSNNL SVVTYSKESP ENSBTAP00000045829/1-210 ---------- ---------- ---------- ---------- ---------- ENSP00000363135/1-298 NTWAPAPDTW APAPDQTEQD QNRLSQNSVN LSPSSHANNL SVVTYSKGLH ENSTTRP00000007388/1-206 ---------- ---------- ---------- ---------- ---------- 301 350 BACU003135/1-189 -------- bmy_05145T0/1-285 LP------ ENSBTAP00000045829/1-210 -------- ENSP00000363135/1-298 GPYPFGQS ENSTTRP00000007388/1-206 --------